XLOC_033005 (nipa1)


Basic Information

Item Value
gene id XLOC_033005
gene name nipa1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37745719 ~ 37749711 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064128
ACTGTTTAGAATGAACTTCCGGGATGTAGTGTACGATAACTGTGATTTTCTACATGTCTAAACGAATACCAAAGTCCACAAACCTATGAGGTCTTCATCGACAACAATAAAATCAAAGAGTGATCTAAAGACCGTTCATAAACTCGCACATATTTATGGACGAGACCCCTTTCCCAGTCGTTGGTGTTGTGATTGCTGTAGTGTCCAGTTTTATCAATGGATCCACGTTTGTGCTCCAGAAAAAGGGGATACTGCGAGCCCGCAAATCAGGTGGGACTTACCTGGCTGACTGTGTGTGGTGGTGTGGGACACTTGCAATGATTGTGGGACAAATAGGGAATTTTTTGGCCTACAATGTTGCCCCAGCAGTTGTGGTCACACCTCTTGGTGCCCTTGGAGTCTTGTTTGGTGCCGTTCTGGCATCCTGGCTCCTTCAGGAACATCTCGATCTCATAGGGAAACTTGGCTGCATTTTGTGCTGTTGCGGTGCAGTTGTGctcatcattcactcacccaAGTCTGAAAATGTCACATCAAGAGCAGAACTAGAGGAGCGACTGATGGACCCAGtgTTTCAGGTGTACATCTCACTGGTGGTCATATTATTGATCATACTGATCGGCTGGCTGTCTCCAGCTCACGGAAAGTCCAACATTATGGTTTATGTGGGCATCTGTTCTCTCCTTGGGAGTTTCACTGTTCCCAGCAGTAAAGGTTTAGGATTGGCTGCTCAAGAGGCCTTCAGTCAAACACCTTCGAGTGACGGCAGAGCATTTTTCCTCTTCCTGGGGTTGCTGGGAGTTTTAGTAGTCAGTATTCTAATCCAGTTCACCTTTATCAACAAAGCCTTGGAGAACTTCAGCTCTAACATGTTTGAGGCCATTTACTATGTGACTTTTACCTCCTGTGTCATCCTGGCCTCAGCTGTTCTTTTCAGGGAATGGACAGCACTTGGCATTGTGGACTGTTTGGGTATTTTGTGTGGTTTCGTTACAGTATCAGTGGGTGTTGCCTTATTGCGCATTTCTCAAGAAGCTAAACTTACTTGGAGCCAAACCAAAGATAAAGAGAACTAACTaattttgtgtaaatatttttaacagtaaCTGGAAGTGGACTTGATGTGTTAACAGTAACTTCTGTAGATCCTTATGAGGGATATTTTCATCAGTTGATCataccttttgttttttttaaaatgggATTGATATTGATTATAAGGCATTAAATGTAACTCACTAATggataatttatttttaagatatattttctttcataaatatgcttttatttatttttaatcatgattaaatgaaattttaaaactCA
>TCONS_00064129
ACTTCCGGGATGTAGTGTACGATAACTGTGATTTTCTACATGTCTAAACGAATACCAAAGTCCACAAACCTATGAGGTCTTCATCGACAACAATAAAATCAAAGAGTGATCTAAAGACCGTTCATAAACTCGCACATATTTATGGACGAGACCCCTTTCCCAGTCGTTGGTGTTGTGATTGCTGTAGTGTCCAGTTTTATCAATGGATCCACGTTTGTGCTCCAGAAAAAGGGGATACTGCGAGCCCGCAAATCAGGTGGGACTTACCTGGCTGACTGTGTGTGGTGGTGTGGGACACTTGCAATGATTGTGGGACAAATAGGGAATTTTTTGGCCTACAATGTTGCCCCAGCAGTTGTGGTCACACCTCTTGGTGCCCTTGGAGTCTTGTTTGGTGCCGTTCTGGCATCCTGGCTCCTTCAGGAACATCTCGATCTCATAGGGAAACTTGGCTGCATTTTGTGCTGTTGCGGTGCAGTTGTGctcatcattcactcacccaAGTCTGAAAATGTCACATCAAGAGCAGAACTAGAGGAGCGACTGATGGACCCAGGTATGGAAAAACATCACTGATGGAGTCATGTTTCATATATTCTcaatggtggcccagtggttaaagACATAGTCCActcaaaattctgtcatcatcacTTACTCTCATGTAATTCTAAACATGCATGGTCAATTGCTTCAGTCTCATACAGCCAAATCTCAAATGTACTTCATAACTTTAGTGCTGTGTATAGGGCTGCACggttaatcgaaaaaagatcacgatctgaT

Function

symbol description
nipa1 Predicted to enable magnesium ion transmembrane transporter activity. Acts upstream of or within axon guidance. Predicted to be integral component of membrane. Predicted to be active in membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 6. Orthologous to human NIPA1 (NIPA magnesium transporter 1).

GO:

id name namespace
GO:0015693 magnesium ion transport biological_process
GO:0007411 axon guidance biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015095 magnesium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-041010-164 Predicted to enable magnesium ion transmembrane transporter activity. Acts upstream of or within axon guidance. Predicted to be integral component of membrane. Predicted to be active in membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 6. Orthologous to human NIPA1 (NIPA magnesium transporter 1).

Ensembl:

ensembl_id ENSDARG00000055917

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064128 False 1329 mRNA 0.41 5 37745719 37749711
TCONS_00064129 True 786 lncRNA 0.44 4 37748555 37749697

Neighbor

gene id symbol gene type direction distance location
XLOC_033004 nipa2 coding downstream 211 37733608 ~ 37745508 (-)
XLOC_033002 chst7 coding downstream 123143 37603968 ~ 37622576 (-)
XLOC_033003 BX322552.1 coding downstream 130236 37615366 ~ 37615483 (-)
XLOC_033001 rp2 coding downstream 219840 37513911 ~ 37525879 (-)
XLOC_033000 jade3 coding downstream 232586 37478765 ~ 37513133 (-)
XLOC_033006 CR407584.1 coding upstream 382800 38132511 ~ 38358080 (-)
XLOC_033007 gabra5 coding upstream 617225 38366936 ~ 38426942 (-)
XLOC_033008 CR628341.2 coding upstream 847958 38597669 ~ 38597784 (-)
XLOC_033009 NA coding upstream 1009835 38759546 ~ 38764326 (-)
XLOC_033010 cnga3a coding upstream 1042189 38791900 ~ 38818582 (-)
XLOC_032997 BX324166.3 non-coding downstream 298576 37447028 ~ 37447143 (-)
XLOC_032996 BX324166.2 non-coding downstream 306349 37439255 ~ 37439370 (-)
XLOC_032992 NA non-coding downstream 401125 37342328 ~ 37344594 (-)
XLOC_032991 CT033823.2 non-coding downstream 975650 36769939 ~ 36770069 (-)
XLOC_033024 NA non-coding upstream 1742135 39491846 ~ 39521832 (-)
XLOC_033025 CU467856.1 non-coding upstream 1775213 39524924 ~ 39525505 (-)

Expression


Co-expression Network