XLOC_036278 (cabp4)


Basic Information

Item Value
gene id XLOC_036278
gene name cabp4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13794785 ~ 13823098 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070907
ACAGTCAATCTACACCTTCTCTCAGAGGAGCGTCAATTGATTTTAAAACATCGACTCAAGTGGTTTTTGGACGCTTTCATCTCCTCGTTGTGAAGTATGTCTCAGAGGAGTAGAACGTCTTCAAAAGAAAGCAGCTCTGGTCCTTCATCTTCATCAGACACTCCTCCTCCACGCTCCGCGCTCCGCAACTCCTCCAAAGACTCAAAAAACTCTGGCCACAGGGGCTCATCTGACAGCCAAGGACGCCGCGGAAGCAGAACATTCAGCCAGAACTCAGCTATTGCTGCAGCGTATACGCAGTATCTCAATTCTCTATTTGGACAGGACAGAGATTTACTGCCAGAGGAACTGGATGAGCTGCTTGAAGCGTTTAAAGAGTTCGACTATGACCAGGACGGGTATTTGCACTACAAAGATGTGGCAGACTGCATGAGAACTATGGGATACATGCCAACAGAGATGGAACTGATTGAGATCATTCAGCAGATAAAAATGAAATggggAGGTCACGTGGACTTTGATGATTTCTGTGAATTAATGGGGCCCAGAATGCTGGCTGAAACGGCTCATATGGTGGGACTAAGGGAGCTGCACTGCGCTTTCAAACAGTTTGACTGTGACGGTGATGGACGGATCACCTTTGAGGAGCTAAAGGAGTCCACAAAGACGCTGCTCGGGGAAAAGCTGAAAAAAGGAGAGCTGGAAGAAATTCTGACAGACATCGACCTCAACGGAGATGGAAATGTGGACTTCGATGAGTTCGTTATGATGTTGTCTCTCCGATAGCTGGGTGTGTCTCTATTCCTGAGAGCTCAGTGGCGGATCATCATAGGCCTGTCTGTCAGTCAAGATGTTAAGTACGTTGTAAATAAACTTCTGAGATTCATGTAGAAATGTAAAAAGCATATATCTGAATTCAATAAAAGTCTAAAA
>TCONS_00070908
ACTTTCTACAGTCAATCTACACCTTCTCTCAGAGGAGCGTCAATTGATTTTAAAACATCGACTCAAGTGGTTTTTGGACGCTTTCATCTCCTCGTTGTGAAGTATGTCTCAGAGGAGTAGAACGTCTTCAAAAGAAAGCAGCTCTGGTCCTTCATCTTCATCAGACACTCCTCCTCCACGCTCCGCGCTCCGCAACTCCTCCAAAGACTCAAAAAACTCTGGCCACAGGGGCTCATCTGACAGCCAAGGACGCCGCGGAAGCAGAACATTCAGCCAGAACTCAGCTATTGCTGCAGCGTATACGCAGTATCTCAATTCTCTATTTGGACAGGACAGAGATTTACTGCCAGAGGAACTGGATGAGCTGCTTGAAGCGTTTAAAGAGTTCGACTATGACCAGGACGGGTATTTGCACTACAAAGATGTGGCAGACTGCATGAGAACTATGGGATACATGCCAACAGAGATGGAACTGATTGAGATCATTCAGCAGATAAAAATGAAAT

Function

symbol description
cabp4 Predicted to enable calcium ion binding activity. Is expressed in retinal photoreceptor layer. Orthologous to human CABP4 (calcium binding protein 4).

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0007165 signal transduction biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-291 Predicted to enable calcium ion binding activity. Is expressed in retinal photoreceptor layer. Orthologous to human CABP4 (calcium binding protein 4).

Ensembl:

ensembl_id ENSDARG00000008866

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070907 False 933 mRNA 0.46 8 13794785 13823091
TCONS_00070908 True 506 mRNA 0.46 5 13802227 13823098

Neighbor

gene id symbol gene type direction distance location
XLOC_036275 si:dkey-258f14.2 coding downstream 59213 13643799 ~ 13735572 (-)
XLOC_036277 NA coding downstream 78208 13714942 ~ 13716577 (-)
XLOC_036276 si:dkey-258f14.3 coding downstream 116370 13653699 ~ 13678415 (-)
XLOC_036274 b3gnt3.4 coding downstream 153763 13630492 ~ 13641022 (-)
XLOC_036273 b3gnt3.3 coding downstream 194511 13597405 ~ 13600274 (-)
XLOC_036279 CT025854.2 coding upstream 54630 13877728 ~ 13877845 (-)
XLOC_036280 serping1 coding upstream 137557 13960655 ~ 13972626 (-)
XLOC_036281 igf3 coding upstream 155388 13978486 ~ 13985032 (-)
XLOC_036282 si:dkeyp-110g5.4 coding upstream 168199 13991297 ~ 13999293 (-)
XLOC_036283 atp2b3a coding upstream 180134 14003232 ~ 14052349 (-)
XLOC_036263 NA non-coding downstream 488737 13302679 ~ 13306048 (-)
XLOC_036261 BX119975.1 non-coding downstream 555693 13238973 ~ 13239092 (-)
XLOC_036253 NA non-coding downstream 1084561 12686691 ~ 12710224 (-)
XLOC_036251 NA non-coding downstream 1125373 12451451 ~ 12669412 (-)
XLOC_036286 BX248385.1 non-coding upstream 269696 14092794 ~ 14094516 (-)
XLOC_036294 BX294388.2 non-coding upstream 591255 14414353 ~ 14452438 (-)
XLOC_036296 NA non-coding upstream 651671 14474769 ~ 14482457 (-)
XLOC_036297 NA non-coding upstream 668195 14491293 ~ 14495346 (-)

Expression


Co-expression Network