LOC110508574 (LOC106599880)


Basic Information

Item Value
gene id LOC110508574
gene name LOC106599880
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 12749686 ~ 12756386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589173.2
CTGGAAGTTTGGCTTCCCCTCTTCAGTGACCCACTGTTTCCTACATTTCCAGTCTTCAGTAAATTTCCTCGAGAACATGCATGGGTGGTTAGGAAGTGAGCATCTGAAGCCAAGCCAAAATGACATGCCCAACCCGAGACATCCCCATCCACAGCTGGCCAGGCTCCTACTACATCAACAGTGAGAAGCGCTGGGATGCCGGCACCCTGTCCCTGACCCGCACCATGCTGCGCTTCACCTCAGACCAGAGCAAAGAGAACCTGGTTGGTTTCCGCCTCTCAAGGATCATGGAGATCAAGATGGAGTCGTCCAGCTTCATCTTCAGCACTCTGACTGTGTTGGAGCATGGGAATATCAAGCACTGGTTCGGCTCGCTGAGGCCCAACCGGGTGGTGGTCTACAATGTCCTGGAGCATTTctggagggagaggttgttgtccccaTCTGCAGAGGTTCAGGGGGCTGAGGCACAGCCGACCAAGGGGAGGGAGCTGATTAACCTGGTTGCGGGGGCTCAGAGACGGCTAGAGGACACAGGGAATGTCCTCCACCACCAGGGAGAACAGTTTGATAATGTCATGCATGGCCTAGGCAAGATCGACTCAGATCTGGGCGTGGCAGACAGGCTACTTTCTGAACTGGAGTCTCCCCCTTGgtggccttttggcaaactacccTGGAAGAGTCAGCAGGATGTCAAGGCTGAGCATGCTGCCAGAGAGGCTGCTTGTAAGTTAACAGGAACAGGCAAGCACAGAGTGATCACCAGCGTACCAGCCATCGTCTCCAGAGGTGGAGACTCAGACCTGAAGCCTGGTTGCTTGATGGTGATGGTCTCCTCATTAGAAGTCCGAGACACAAACTATGTGCTGCTCCACCGCTTTCAGAGGGATGAGGTGGATGACATCCGGGTGCACAATCCGTATGAGATCAGTGTGAGGCAGAGGTTCATAGGGAAGCCAGACATATGCTTCCGACTCCTGTCGGCTAAGATGCCGGAGGCCATGTCAGTGctagagatacagtataagaAGAAGGTGGAGTACACAAGTGAGTACTCTGCCTTCCTGACGACCCCAGCTACGACCCCATGTGACCAGGATCAAGGTTCAATATGGAATGCAGCAGGCCTGCTGCAGAACCAGGAGACAGAGGTCCCCATGACAGTCCCAGCAGGAGAGCTGTCCCAGGTGCAGGTGCATGTCCTTAAGCCAGAGGTCACTCAGGCTGAGGCTCAGGAAATCCGACAGATGCTGATGCAGCTGAAAAACCTGGCTCTGGAGGCTGAGACTGAGCTGGAGAGGCAAGACGAGGCCCTGGATATTCTGACCAGCTCTACGGACCGGGCCACTAtgcacatagacaaacacacctGCCGCATGAAGAGGCTGCTGTAGTTCACACACCAGCCAACCGGCTCACCACAGCGCAATCCAGAAATGCGCTTTGCAGGTGTCAGTAAAgccattcccctccctccctgcacaTGGTTTCCCTCCAGCTCCAAGTGTTGCATGTTGCTGCAGAGTAAGTGATGCATCGAGTGGGATCGCTGAATTATAACCCAGTTTGCAGTGGGTCTGAAACGAAGTCCCTTGAAACTGTGTCCCTTGAAATTCACAGAATACTATTCGGTCACCACCTATTCTATAATGTACAGTACAAGAAAAAGCAGACGGCAACTCACAATCTTGCTAACAGTGACACTGGATTTGGGGATATCTGTATAATCATATTTGTATGAATGACTTGCATTGACTTCTATGCTGTACTCTATGTTGTACTGTAATTTATTTATCGTCTATTTATCGTTGATAAACTGATTTAAACCCAAAA
>XM_021589174.2
GTCTGTACTGAGGAAGTGACGTCTCTTCACGTCCAAACAAATCACTCGCTTGGGAACCAATCTGcgaaaatatatttttcttacatattttatttttttgtacaattattaaagtggccccTTAAAATATCTATTAACAGTTTCCACGCAGAGCAGCTGTACTCAAATAATGCACAATCGATACTATTATCGTCTTACGCAACATTACAAAACTGTAGCTTCTGAATTCCTGGAATAGTCATAACCCTGCAGGAGCTCAGGTGAGCATCTGAAGCCAAGCCAAAATGACATGCCCAACCCGAGACATCCCCATCCACAGCTGGCCAGGCTCCTACTACATCAACAGTGAGAAGCGCTGGGATGCCGGCACCCTGTCCCTGACCCGCACCATGCTGCGCTTCACCTCAGACCAGAGCAAAGAGAACCTGGTTGGTTTCCGCCTCTCAAGGATCATGGAGATCAAGATGGAGTCGTCCAGCTTCATCTTCAGCACTCTGACTGTGTTGGAGCATGGGAATATCAAGCACTGGTTCGGCTCGCTGAGGCCCAACCGGGTGGTGGTCTACAATGTCCTGGAGCATTTctggagggagaggttgttgtccccaTCTGCAGAGGTTCAGGGGGCTGAGGCACAGCCGACCAAGGGGAGGGAGCTGATTAACCTGGTTGCGGGGGCTCAGAGACGGCTAGAGGACACAGGGAATGTCCTCCACCACCAGGGAGAACAGTTTGATAATGTCATGCATGGCCTAGGCAAGATCGACTCAGATCTGGGCGTGGCAGACAGGCTACTTTCTGAACTGGAGTCTCCCCCTTGgtggccttttggcaaactacccTGGAAGAGTCAGCAGGATGTCAAGGCTGAGCATGCTGCCAGAGAGGCTGCTTGTAAGTTAACAGGAACAGGCAAGCACAGAGTGATCACCAGCGTACCAGCCATCGTCTCCAGAGGTGGAGACTCAGACCTGAAGCCTGGTTGCTTGATGGTGATGGTCTCCTCATTAGAAGTCCGAGACACAAACTATGTGCTGCTCCACCGCTTTCAGAGGGATGAGGTGGATGACATCCGGGTGCACAATCCGTATGAGATCAGTGTGAGGCAGAGGTTCATAGGGAAGCCAGACATATGCTTCCGACTCCTGTCGGCTAAGATGCCGGAGGCCATGTCAGTGctagagatacagtataagaAGAAGGTGGAGTACACAAGTGAGTACTCTGCCTTCCTGACGACCCCAGCTACGACCCCATGTGACCAGGATCAAGGTTCAATATGGAATGCAGCAGGCCTGCTGCAGAACCAGGAGACAGAGGTCCCCATGACAGTCCCAGCAGGAGAGCTGTCCCAGGTGCAGGTGCATGTCCTTAAGCCAGAGGTCACTCAGGCTGAGGCTCAGGAAATCCGACAGATGCTGATGCAGCTGAAAAACCTGGCTCTGGAGGCTGAGACTGAGCTGGAGAGGCAAGACGAGGCCCTGGATATTCTGACCAGCTCTACGGACCGGGCCACTAtgcacatagacaaacacacctGCCGCATGAAGAGGCTGCTGTAGTTCACACACCAGCCAACCGGCTCACCACAGCGCAATCCAGAAATGCGCTTTGCAGGTGTCAGTAAAgccattcccctccctccctgcacaTGGTTTCCCTCCAGCTCCAAGTGTTGCATGTTGCTGCAGAGTAAGTGATGCATCGAGTGGGATCGCTGAATTATAACCCAGTTTGCAGTGGGTCTGAAACGAAGTCCCTTGAAACTGTGTCCCTTGAAATTCACAGAATACTATTCGGTCACCACCTATTCTATAATGTACAGTACAAGAAAAAGCAGACGGCAACTCACAATCTTGCTAACAGTGACACTGGATTTGGGGATATCTGTATAATCATATTTGTATGAATGACTTGCATTGACTTCTATGCTGTACTCTATGTTGTACTGTAATTTATTTATCGTCTATTTATCGTTGATAAACTGATTTAAACCCAAAA
>XM_021589175.2
TGAGGAAGTGACGTCTCTTCACGTCCAAACAAATCACTCGCTTGGGAACCAATCTGcgaaaatatatttttcttacatattttatttttttgtacaattattaaagtggccccTTAAAATATCTATTAACAGTTTCCACGCAGAGCAGCTGTACTCAAATAATGCACAATCGATACTATTATCGTCTTACGCAACATTACAAAACTGTAGCTTCTGAATTCCTGGAATAGTCATAACCCTGCAGGAGCTCAGGTGCCAGGTTTGTTTAAAAAGTGAGCATCTGAAGCCAAGCCAAAATGACATGCCCAACCCGAGACATCCCCATCCACAGCTGGCCAGGCTCCTACTACATCAACAGTGAGAAGCGCTGGGATGCCGGCACCCTGTCCCTGACCCGCACCATGCTGCGCTTCACCTCAGACCAGAGCAAAGAGAACCTGGTTGGTTTCCGCCTCTCAAGGATCATGGAGATCAAGATGGAGTCGTCCAGCTTCATCTTCAGCACTCTGACTGTGTTGGAGCATGGGAATATCAAGCACTGGTTCGGCTCGCTGAGGCCCAACCGGGTGGTGGTCTACAATGTCCTGGAGCATTTctggagggagaggttgttgtccccaTCTGCAGAGGTTCAGGGGGCTGAGGCACAGCCGACCAAGGGGAGGGAGCTGATTAACCTGGTTGCGGGGGCTCAGAGACGGCTAGAGGACACAGGGAATGTCCTCCACCACCAGGGAGAACAGTTTGATAATGTCATGCATGGCCTAGGCAAGATCGACTCAGATCTGGGCGTGGCAGACAGGCTACTTTCTGAACTGGAGTCTCCCCCTTGgtggccttttggcaaactacccTGGAAGAGTCAGCAGGATGTCAAGGCTGAGCATGCTGCCAGAGAGGCTGCTTGTAAGTTAACAGGAACAGGCAAGCACAGAGTGATCACCAGCGTACCAGCCATCGTCTCCAGAGGTGGAGACTCAGACCTGAAGCCTGGTTGCTTGATGGTGATGGTCTCCTCATTAGAAGTCCGAGACACAAACTATGTGCTGCTCCACCGCTTTCAGAGGGATGAGGTGGATGACATCCGGGTGCACAATCCGTATGAGATCAGTGTGAGGCAGAGGTTCATAGGGAAGCCAGACATATGCTTCCGACTCCTGTCGGCTAAGATGCCGGAGGCCATGTCAGTGctagagatacagtataagaAGAAGGTGGAGTACACAAGTGAGTACTCTGCCTTCCTGACGACCCCAGCTACGACCCCATGTGACCAGGATCAAGGTTCAATATGGAATGCAGGCCTGCTGCAGAACCAGGAGACAGAGGTCCCCATGACAGTCCCAGCAGGAGAGCTGTCCCAGGTGCAGGTGCATGTCCTTAAGCCAGAGGTCACTCAGGCTGAGGCTCAGGAAATCCGACAGATGCTGATGCAGCTGAAAAACCTGGCTCTGGAGGCTGAGACTGAGCTGGAGAGGCAAGACGAGGCCCTGGATATTCTGACCAGCTCTACGGACCGGGCCACTAtgcacatagacaaacacacctGCCGCATGAAGAGGCTGCTGTAGTTCACACACCAGCCAACCGGCTCACCACAGCGCAATCCAGAAATGCGCTTTGCAGGTGTCAGTAAAgccattcccctccctccctgcacaTGGTTTCCCTCCAGCTCCAAGTGTTGCATGTTGCTGCAGAGTAAGTGATGCATCGAGTGGGATCGCTGAATTATAACCCAGTTTGCAGTGGGTCTGAAACGAAGTCCCTTGAAACTGTGTCCCTTGAAATTCACAGAATACTATTCGGTCACCACCTATTCTATAATGTACAGTACAAGAAAAAGCAGACGGCAACTCACAATCTTGCTAACAGTGACACTGGATTTGGGGATATCTGTATAATCATATTTGTATGAATGACTTGCATTGACTTCTATGCTGTACTCTATGTTGTACTGTAATTTATTTATCGTCTATTTATCGTTGATAAACTGATTTAAACCCAAAA
>XM_021589171.2
GGAAGTGACGTCTCTTCACGTCCAAACAAATCACTCGCTTGGGAACCAATCTGcgaaaatatatttttcttacatattttatttttttgtacaattattaaagtggccccTTAAAATATCTATTAACAGTTTCCACGCAGAGCAGCTGTACTCAAATAATGCACAATCGATACTATTATCGTCTTACGCAACATTACAAAACTGTAGCTTCTGAATTCCTGGAATAGTCATAACCCTGCAGGAGCTCAGGTGCCAGGTTTGTTTAAAAAGTGAGCATCTGAAGCCAAGCCAAAATGACATGCCCAACCCGAGACATCCCCATCCACAGCTGGCCAGGCTCCTACTACATCAACAGTGAGAAGCGCTGGGATGCCGGCACCCTGTCCCTGACCCGCACCATGCTGCGCTTCACCTCAGACCAGAGCAAAGAGAACCTGGTTGGTTTCCGCCTCTCAAGGATCATGGAGATCAAGATGGAGTCGTCCAGCTTCATCTTCAGCACTCTGACTGTGTTGGAGCATGGGAATATCAAGCACTGGTTCGGCTCGCTGAGGCCCAACCGGGTGGTGGTCTACAATGTCCTGGAGCATTTctggagggagaggttgttgtccccaTCTGCAGAGGTTCAGGGGGCTGAGGCACAGCCGACCAAGGGGAGGGAGCTGATTAACCTGGTTGCGGGGGCTCAGAGACGGCTAGAGGACACAGGGAATGTCCTCCACCACCAGGGAGAACAGTTTGATAATGTCATGCATGGCCTAGGCAAGATCGACTCAGATCTGGGCGTGGCAGACAGGCTACTTTCTGAACTGGAGTCTCCCCCTTGgtggccttttggcaaactacccTGGAAGAGTCAGCAGGATGTCAAGGCTGAGCATGCTGCCAGAGAGGCTGCTTGTAAGTTAACAGGAACAGGCAAGCACAGAGTGATCACCAGCGTACCAGCCATCGTCTCCAGAGGTGGAGACTCAGACCTGAAGCCTGGTTGCTTGATGGTGATGGTCTCCTCATTAGAAGTCCGAGACACAAACTATGTGCTGCTCCACCGCTTTCAGAGGGATGAGGTGGATGACATCCGGGTGCACAATCCGTATGAGATCAGTGTGAGGCAGAGGTTCATAGGGAAGCCAGACATATGCTTCCGACTCCTGTCGGCTAAGATGCCGGAGGCCATGTCAGTGctagagatacagtataagaAGAAGGTGGAGTACACAAGTGAGTACTCTGCCTTCCTGACGACCCCAGCTACGACCCCATGTGACCAGGATCAAGGTTCAATATGGAATGCAGCAGGCCTGCTGCAGAACCAGGAGACAGAGGTCCCCATGACAGTCCCAGCAGGAGAGCTGTCCCAGGTGCAGGTGCATGTCCTTAAGCCAGAGGTCACTCAGGCTGAGGCTCAGGAAATCCGACAGATGCTGATGCAGCTGAAAAACCTGGCTCTGGAGGCTGAGACTGAGCTGGAGAGGCAAGACGAGGCCCTGGATATTCTGACCAGCTCTACGGACCGGGCCACTAtgcacatagacaaacacacctGCCGCATGAAGAGGCTGCTGTAGTTCACACACCAGCCAACCGGCTCACCACAGCGCAATCCAGAAATGCGCTTTGCAGGTGTCAGTAAAgccattcccctccctccctgcacaTGGTTTCCCTCCAGCTCCAAGTGTTGCATGTTGCTGCAGAGTAAGTGATGCATCGAGTGGGATCGCTGAATTATAACCCAGTTTGCAGTGGGTCTGAAACGAAGTCCCTTGAAACTGTGTCCCTTGAAATTCACAGAATACTATTCGGTCACCACCTATTCTATAATGTACAGTACAAGAAAAAGCAGACGGCAACTCACAATCTTGCTAACAGTGACACTGGATTTGGGGATATCTGTATAATCATATTTGTATGAATGACTTGCATTGACTTCTATGCTGTACTCTATGTTGTACTGTAATTTATTTATCGTCTATTTATCGTTGATAAACTGATTTAAACCCAAAA
>XM_021589172.2
GGAAGTGACGTCTCTTCACGTCCAAACAAATCACTCGCTTGGGAACCAATCTGcgaaaatatatttttcttacatattttatttttttgtacaattattaaagtggccccTTAAAATATCTATTAACAGTTTCCACGCAGAGCAGCTGTACTCAAATAATGCACAATCGATACTATTATCGTCTTACGCAACATTACAAAACTGTAGCTTCTGAATTCCTGGAATAGTCATAACCCTGCAGGAGCTCAGGTGCCAGGTGAGCATCTGAAGCCAAGCCAAAATGACATGCCCAACCCGAGACATCCCCATCCACAGCTGGCCAGGCTCCTACTACATCAACAGTGAGAAGCGCTGGGATGCCGGCACCCTGTCCCTGACCCGCACCATGCTGCGCTTCACCTCAGACCAGAGCAAAGAGAACCTGGTTGGTTTCCGCCTCTCAAGGATCATGGAGATCAAGATGGAGTCGTCCAGCTTCATCTTCAGCACTCTGACTGTGTTGGAGCATGGGAATATCAAGCACTGGTTCGGCTCGCTGAGGCCCAACCGGGTGGTGGTCTACAATGTCCTGGAGCATTTctggagggagaggttgttgtccccaTCTGCAGAGGTTCAGGGGGCTGAGGCACAGCCGACCAAGGGGAGGGAGCTGATTAACCTGGTTGCGGGGGCTCAGAGACGGCTAGAGGACACAGGGAATGTCCTCCACCACCAGGGAGAACAGTTTGATAATGTCATGCATGGCCTAGGCAAGATCGACTCAGATCTGGGCGTGGCAGACAGGCTACTTTCTGAACTGGAGTCTCCCCCTTGgtggccttttggcaaactacccTGGAAGAGTCAGCAGGATGTCAAGGCTGAGCATGCTGCCAGAGAGGCTGCTTGTAAGTTAACAGGAACAGGCAAGCACAGAGTGATCACCAGCGTACCAGCCATCGTCTCCAGAGGTGGAGACTCAGACCTGAAGCCTGGTTGCTTGATGGTGATGGTCTCCTCATTAGAAGTCCGAGACACAAACTATGTGCTGCTCCACCGCTTTCAGAGGGATGAGGTGGATGACATCCGGGTGCACAATCCGTATGAGATCAGTGTGAGGCAGAGGTTCATAGGGAAGCCAGACATATGCTTCCGACTCCTGTCGGCTAAGATGCCGGAGGCCATGTCAGTGctagagatacagtataagaAGAAGGTGGAGTACACAAGTGAGTACTCTGCCTTCCTGACGACCCCAGCTACGACCCCATGTGACCAGGATCAAGGTTCAATATGGAATGCAGCAGGCCTGCTGCAGAACCAGGAGACAGAGGTCCCCATGACAGTCCCAGCAGGAGAGCTGTCCCAGGTGCAGGTGCATGTCCTTAAGCCAGAGGTCACTCAGGCTGAGGCTCAGGAAATCCGACAGATGCTGATGCAGCTGAAAAACCTGGCTCTGGAGGCTGAGACTGAGCTGGAGAGGCAAGACGAGGCCCTGGATATTCTGACCAGCTCTACGGACCGGGCCACTAtgcacatagacaaacacacctGCCGCATGAAGAGGCTGCTGTAGTTCACACACCAGCCAACCGGCTCACCACAGCGCAATCCAGAAATGCGCTTTGCAGGTGTCAGTAAAgccattcccctccctccctgcacaTGGTTTCCCTCCAGCTCCAAGTGTTGCATGTTGCTGCAGAGTAAGTGATGCATCGAGTGGGATCGCTGAATTATAACCCAGTTTGCAGTGGGTCTGAAACGAAGTCCCTTGAAACTGTGTCCCTTGAAATTCACAGAATACTATTCGGTCACCACCTATTCTATAATGTACAGTACAAGAAAAAGCAGACGGCAACTCACAATCTTGCTAACAGTGACACTGGATTTGGGGATATCTGTATAATCATATTTGTATGAATGACTTGCATTGACTTCTATGCTGTACTCTATGTTGTACTGTAATTTATTTATCGTCTATTTATCGTTGATAAACTGATTTAAACCCAAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K18212 SNAP47; synaptosomal-associated protein 47

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589173.2 False 1836 mRNA 0.52 6 12749686 12756386
XM_021589174.2 False 2001 mRNA 0.50 6 12750354 12756386
XM_021589175.2 False 2010 mRNA 0.50 6 12750362 12756386
XM_021589171.2 False 2010 mRNA 0.50 6 12750365 12756386
XM_021589172.2 True 1997 mRNA 0.50 6 12750365 12756386

Neighbor

gene id symbol gene type direction distance location
LOC110508573 LOC106599884 coding upstream 16146 12706958 ~ 12733540 (+)
LOC110508572 LOC106599887 coding upstream 48738 12698971 ~ 12700948 (+)
pth1r LOC106599896 coding upstream 118849 12544539 ~ 12630837 (+)
LOC110508566 LOC106599903 coding upstream 246974 12422287 ~ 12502712 (+)
LOC110508562 LOC106600434 coding upstream 527851 12206077 ~ 12221835 (+)
LOC110508578 LOC106599872 coding downstream 225419 12981805 ~ 13010377 (+)
LOC110508579 arf1 coding downstream 304194 13060580 ~ 13065707 (+)
LOC110508581 kgua coding downstream 324212 13080598 ~ 13102331 (+)
LOC100136204 LOC100136204 coding downstream 461611 13217997 ~ 13219450 (+)
LOC118944853 LOC100136204 coding downstream 469007 13225393 ~ 13226868 (+)
G2105053 NA non-coding upstream 4075 12745401 ~ 12745611 (+)
G2105049 NA non-coding upstream 8963 12740081 ~ 12740723 (+)
G2104921 NA non-coding upstream 13233 12735103 ~ 12736453 (+)
G2105013 NA non-coding upstream 70864 12677860 ~ 12678822 (+)
G2105064 NA non-coding downstream 6932 12763318 ~ 12763555 (+)
G2105074 NA non-coding downstream 19736 12776122 ~ 12776361 (+)
G2105087 NA non-coding downstream 38711 12795097 ~ 12795311 (+)
G2106261 NA non-coding downstream 75908 12832294 ~ 12832589 (+)
G2106280 NA non-coding downstream 88725 12845111 ~ 12845458 (+)
G2104555 NA other upstream 816594 11889116 ~ 11933092 (+)
LOC110508540 LOC106600420 other upstream 1258851 11488248 ~ 11491159 (+)
G2103533 LOC105021892 other upstream 1996726 10713576 ~ 10752960 (+)
G2103519 NA other upstream 2046666 10702728 ~ 10703020 (+)
LOC110508500 LOC106600383 other upstream 2227048 10510527 ~ 10524470 (+)
G2106278 NA other downstream 88001 12844387 ~ 12844904 (+)
G2106543 NA other downstream 370576 13126962 ~ 13127231 (+)
G2106548 NA other downstream 377013 13133399 ~ 13133761 (+)
G2106549 NA other downstream 377508 13133894 ~ 13134485 (+)
G2106557 NA other downstream 386927 13143313 ~ 13143595 (+)

Expression


Co-expression Network