cbx6a


Basic Information

Item Value
gene id cbx6a
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 13044252 ~ 13068047 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814014.1
ttctgctgctgggGCTGtagtggtgtgtttgtgtgtgtgtttgcatgtgtgccTGCTGCCTCTCACACACAGTTTTGCTTTGGTCGGCCTGAGGAGACAGCAGAGCTTGCCGTCTGGAGAGAGGAAAACACAGACAGGTAGCTTAGTTCGGGCATGAAAGAAAAGATGGAGCTCTCGGCGACGGGAGATCGCGTTTTCGCCGCGGAAGCCATACTGAAACGCCGCGTCCGTAAGGGAAGACTTGAATACTTGGTAAAATGGAAAGGATGGGCAATGAAGCACAGCACTTGGGAGCCAGAGGAGAATATTCTGGATGACAGGCTGATACTGGGCTTTGAGCGAAAGGAACGGGAAAGAGAAATGCACGGACCAAAGAAACGGGGACCAAAACCCAAAAACTTTGTCATGAAGGCTCATGCTCAGAAAGGAGGGACCAGCAGCCGAGCCTCAAACGCCCGCCAGACTACATCGCGCTCCTCTTCGTCCACTTCCAGTCGAGCTACTCCTTCCTCCTCCGCCTCACCTCATTTAGCATCttcgtcctcctcttcctcaactGTGGCACCCTCTCCCAAACTCAATTCCCTCGCAGCCACGCACAAGCTGAAGAAAGACATTCACCGCTGCCACCGGATGTCCAGGCGCCCGCTGCCCCGCTCAGACCCCATGGCGTCCTCCTTCTCCAACCCCGGTGGCTTCCCCTCCCGCCTGCACGTCTCGCCCTTCTCCGAGACCGTCCGCATCCTCAACCGTAGAGTTAAACCACGGGAGATCAAGAGAGGTCGGATCATTCTCAACCTGAAAGTCATTAACAAGCCAGGTAGGGGTGGCGCAGCTGCAGGCGGCAGGAATCTTACAGAAGGACGCCAGAACATCCCTTCCCGCAATCGCATTATCGGGAAGAAGGGAGACGCACCCTATAGACCTTTCCAGCCCCCTCTGAAGATGCTGGGGTTTCCGATGTACGGGAAGCCGTTTGGGCTGCAGTGTGGTGGCCCTTTGTCCTTCCACTCCCACCCAGGCTCCAGCACAGGGGCCAGGAACACCCACCCTACTTCCTCCAAGCACCAGTCGCCTTCTTCTCCTTCCAGCTCCGCCTCAGCTGCTCAGTCTCAGCCTGCCACAGGAGGCTCACCTTCCAGCGAGGGCGCCAAGTCCAGTAAACCTCACACAGAGACCCAGAAGGGCCAGAGTGCCAAGCAAGCTGCTACCGCCCCGTCCTCCGACGCGAACCCCTTGGCGTCGGCGTCTTCTTTCCTCCCCTCCTCACCGTCCTCTTCCTTGGAAGACGTGGAGGATGAGGACGATGCCCCGGACCGTTCAGCGGCCCCAGAGGGAGGCAGGAAAAGCACTCGCCAACGCGGGGCCAAACGCCAGCCGCCCGCCGCCTCTGGCACCCCCGGGAACCAGATCTCTGCCCCCGCCGAACCCCAAAGGGTGCCTGCCGAAGGAGACCCCGACTGGCACCCCGAAATGGCACCGAGCTGCAAGGATGTGGTGGTCACTGACGTCACCACCAACCTCGTCACGGTCACCATAAAAGAGTTCCCCTCCCCTGCCTCGCCCTCCGCTAGCCCTGAAAgcgcctcctctcctcccccaaGCACCACCTCTGATGACGTCTCTCCACCCAAGCCATTGATAATGAAGTTCGTGGTGGTGCTTGTGGCAGCGGGCACCCTGGCCTTCCTCGGCGCGGTCATCTGCATTATCGCCAGCGTTTATCCCCGGAAACGCGACGCGCCACTCGGCGACAACGGCACCCTGACATCGGAGAATCCGTTCGAGCCCCTGGAGCCCGGATCGGTGGCACACGCCGGACCGCTGGGCGCTCTGCACGGCGCCGAGTCCTACGATGGAGAGAAGGGGCTCGGCGGCATCGGCCTGGAGGTCCCCACTCTGAACGAGCTCAACCTCGGGGAGGAGACCGGCGCTGGGTCCCCGAAGCAGTTCAGCTTCAGCCGGTTGATCTGCACGCCTGTACCGGTCGGGGAATGCAAGACCAAAGATCTGAGGCAGCGGCGGGGGGGacagcatcatcatcagcagcagcagcagcagcagcagcagcaggcggaCGACCCGCTGTACGGCGCCGGGGATGAAGACTGGACTTATCTGCGGACCACAGCGGAGGACCTCCGTCAGATGGTCCTGCAGCAGAACGACCAGATCCTCATGGACCAGAGGACCATCCGGGAGCTCACCGGGAAGCTGAGCGAGTGTGAGAGCGGCCTGGAGGACGAGAGGAACATCCCAGAGCGGAGCATCGGGGTCTGGAGCGGCAACCGCCGCGTCATGGCCGGGGATGACGTGAGCTCCTCCGCCGCGGCGCAGCTGCAGACGGCGCGGGCTGTGGAGGAGCTGGCCAGGGCCATCATGGACCTGAAGGACCGCATTGAGAAACTCGagGCGGAGATAGGCCCTGCTGCCTTGAACCTCACCGACACATCTGTAGGCACAAGCAGCGGCAGCGGTGGCAGTAGCAGCCCGGCTGGTAACACCGGCAAGGCTCCCGCTCCGCCTGCCGGGAGTGCTTCCTCCCCACCTGTGGCGGCTCCCCCAGGGGGTCGCCGTCCTGCCTCCCCCGCTGCGCCTGTCCCCAAGCCCCCATCTAAGGGCTCCCCAGTGCGTGGAAAGGGCACCTGGAGGGTGGAGGACCTGGAGGGGGAGCTCGAGAGGAAGATAAAGATGTTGGAGAAGGAGCGTCAGGCCATGAGGAAGGAGACGCAGGGCCAACACGAGAAGATCAACCAGGGCCTCGACACCGTCAACCACCGCGTCACTGAGCTGGAACACACGCTGACAGAGCCACCGTTCCCTGATGGCTTCATCCTCTCCTTCCCCATGCGAACCAACTACATGTACGGCCTGGTGAGAAAAGAGATCACAGAGATGTATGCCTTTACTGCCTGTGTGTGGCTGAAGGTCAAAGAAGGAGGCATCGGCACCCCCTTCTCCTACTCAGTCCCGGGGCAGCCCAACGAGCTGGTGCTGCTACAGGGAGTCCACAACCCTGTGGAGCTGCTCATCAATGACAAGGTGGCGCAGCTGCCTCTGTCTCTACCACAGGACGAGTGGCAGCACATCTGTGTCAGCTGGACCCTGAGGGATGGGGTGTGGAAAGCTTACCAGGGGGGGAAGATGAAGGGGAAGGGAGAGGGACTGGCTGCCTGGCATCCCATCAAACCAGGAGGAGTCCTCATACTGGGACAGGAACAGGATACATTGGGCGGGCATTTCGATGCCTCCCAGGCACTGGTCGGGGAGCTTTCCCAGTTCAACCTGTGGGATCGGGTGTTAAAGCCAGCAGAGGTTGGCGCCCTGGCCGAGTGCAGCTCCTCAGCACTGGGCAACATCGCCCCCTGGACCGACCAAGACGTAGACGTGTACGGCGGTGCCACCAAGGAGTCCCTGGACCCGTGCCACGCTGCCCAGAGATCCAACCCCTCCAGCCCCAAACAGTGAGGGTTGACTGGGAGAGATCAGCCAATGGTGGCTGTGTTAGCTTGGTCGATTTAGGAGACAATGATATATAACAATGTATCACATTGGGGTTTACAGTATATTTGTTGGGGATGGGAAGCTTGCTGGTGGACTGAAATATGTGATGGTGCGATTAAGCCGTTAAGAGCGgtgtaattttttgtttttaagcgtTGGTGTCCACGCTCATGTGTTTACCTCTGCACTGAGATACGCTGAGTTTAGTCACAGAATCACCTTAGTGAAGGCTGCATGGGTGGATCACCTTCTGGCATGAACAGGACTCTTATGGAAGGATTTAGATGAATTATTGGCTGTGGTTAAATGTACCACCCTCAGTTTTAGGTAATAATCTGTTGGGCCAGTTAGCCTTACATTGTTATTCAGGCAGAGGGCTTTTTATTGGGTTTGAATCCAGTTATGGAATTAACCTTTAAAAATGTCCATATCTAAGGGTTTCTTATTTTACAACAAAGTGACACAACGTTCTCATCTTGTGTCCAGTTGgttgtgtttaatgctcaaacaTTCTGAGAATTCTGAGATGCTATCGTGCTTATATTGATTTCAACGCTCAATGGGAAACAAAATGagttttgttcatttttaactGTATATGATCCTGTTGAGTAATGTCTCTGTACTGTTAGCTTTTTACACTGCATACCATGATCGTGTAAAACAGTGGTCTTATTAATGTATATTGTGTAACGTATCtctgctaatgttgctctgtgccAGTCTGCTCCCCTTGCTGTAGCCTCTCATACACCTCGCACTCCTGCAAAGTTAAGTTGCAGCATTTTTGTTTGTGACTTAGCACAGCAGTGCTCTCAATCGACCTCTGGAAGAAACACTCGATGTCTATCTAAGCACCAATCAGACACTGACATTGTAACAAACCTGAGTGagtttggtaaaactgtgttgTATCCTTGAATGTAAACCGGATTGAATGTAAGTGTATTTGCATGAGCAAAGTCACATTTCCTGTCACTAAAGAAACAAACGCAAAATGTGTAAATTACAGCGTTGGTGTCCCCAAACTGCCCACACTCTGAAGCACACAGATGTCTATTTGGTAAATCAAATCCTCACAGAATGACAATGACGGAGGTGTATTAAGTGGGTtgattatgtatgtatatatgtacttAACAGCTGACTCTGTCTAGAGGTTTCAGTAGGAAAAACTAGTTTTACTTTCATTGTCTAAGAAAACGGAAGAACAAACAAAATAGTATGAGCAAAACTCGGGATGCATTTATTTGTCTCAAAACTTTTTTCTCATTCCCTGTTATATAAACGTATGTGGCCAAAACTGCCACTTATAACTTCAAAAAACTACAAAAGACCTAAAgctttgtttacatttgaagATAGTATAAAAGAAATATTTCCTTGGTTGGCACTTGCAAGCTTTTTTATCAAAAAGGAGTGTAATTTCACACTCTGAATGAAGGTAGAATTGGTAATGTGGTGGTAAAATATTGAGCATGATCGATACAGCATTAAATTAAGATTATTGGCAGTTACCTTCAATGATAGACTTTCTGTGATGCAAGCCATCCAAGGTACCTTGATTTTCAGGCGCAAATTATTTACAGCAAAGCCGGTTATATTGGACCTTTCAACTCTTTTCTAGTCATAGTTGCTAGAGTTAACTGTACTAATGTAAATCATAGTAAAGGATGGTTAAATCAAAGACAACAATTACAGCAAGTGCTGTTTGGTTCTTCCTTTTTACATAAAAGAAAGTTTGGATGTGCTTAATCTCTTGATTCAAGTTCAATGCAAGTTCAAAATGGACACCATTGGAATAATGTTTAGAGAAGATGGAACATTGTCAGGGGCgagggtttgattcccactttGGCCAACTACACCAAACATGTATCCACTCAACACTGTGCAGTAAAGTAAACTGTAGTTCAAATACAGATTCACTTATTCCCTTAAGACATCAGCCCCACATGTGATTTGTCACCCAGTTGTAAAGTGCCTGCCTGCCTGGGCTCTCATGCCCCGAAATAATagtgaaatgtttttatgtcttcttcttcttctttgtctctttcttctccttctctatatgactgactctctctctctctctctctctctctctctctctctctctttctctctctctgtctgtctctgtcttgctTTTGGTTGTTGAAGGCTGTGAGTGTTGCGCTTGTCCTTATTTGGATGATATTGTGAAATAGGTGgatacaaaaattaaaaaataaaatggttaTGACAACATTCCTGGACTCATAGCAaacaaaaaatgacatcaaacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagcccagCTTATTGTGACAGATCTCTTTACACCTATCAGCTCATCTGGATTACACCTCAACTAAGCACCTGTAGGCATGCTGtaaacctaacacacacacacacacacacacacacacacacacatacacacacacaaacacacgcatacaAGTTTGTAGCCTAATCTCATTTAGTTCTAGTCAGATTAGATTGGCTGCATCTTTTCTGTCAGAGGAATTTGCCtttgacttgtgtgtgtgtgtgtgtgtgtgttaatacgCAGATGGAGAGGTTAAGTGTTCTTCAGCAGACACCACAGAAAGTCTGCTTCTTGATGTAGACATAATAGATTACTCAGAGTCAGTCGTGACAGCTGATCTGCCCACCCACCccccaaaaatacacacacacgtttttggCTTTCGGCTCAGCTGAACTGTGATGTCATGTGTATCTTCAGACTGCTGACATTTCACGATATTATGTGTCTCACTTGTGCTTGATTTCCTGTTTTGTTTCCCCTCTGTTTTATGACTAAAGAA

Function

NR:

description
chromobox protein homolog 6

GO: NA

KEGG:

id description
K11455 CBX8, PC3; chromobox protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814014.1 True 6408 mRNA 0.51 10 13044252 13068047

Neighbor

gene id symbol gene type direction distance location
LOC120560412 NA coding downstream 24689 12992189 ~ 13019563 (-)
baiap2l2b baiap2l2,LOC102782181,LOC102312770 coding downstream 55011 12977551 ~ 12989241 (-)
ncf4 ncf4 coding downstream 81530 12930132 ~ 12962722 (-)
LOC120565993 LOC103371372,LOC104925466 coding downstream 241426 12799408 ~ 12802826 (-)
LOC120565245 mpst,LOC102779789 coding downstream 289116 12752362 ~ 12755136 (-)
LOC120564587 NA coding upstream 30852 13098899 ~ 13115142 (-)
LOC120564607 LOC103367033 coding upstream 35762 13103809 ~ 13106950 (-)
LOC120567925 NA coding upstream 72234 13140281 ~ 13165526 (-)
LOC120567325 LOC104941710 coding upstream 254618 13322665 ~ 13357702 (-)
LOC120564530 NA coding upstream 316764 13384811 ~ 13392035 (-)
G3940 NA non-coding downstream 245021 12798811 ~ 12799231 (-)
G3935 NA non-coding downstream 259351 12783201 ~ 12784901 (-)
LOC120555888 NA non-coding downstream 277149 12763447 ~ 12767103 (-)
G3929 rps19bp1,LOC102787703 non-coding downstream 285163 12756475 ~ 12759089 (-)
G3926 NA non-coding downstream 292276 12751755 ~ 12751976 (-)
G4032 NA non-coding upstream 21145 13089192 ~ 13157217 (-)
LOC120567932 NA non-coding upstream 70011 13138058 ~ 13151623 (-)
LOC120567935 NA non-coding upstream 83673 13151720 ~ 13152846 (-)
G4066 NA non-coding upstream 126999 13195046 ~ 13272174 (-)
G4115 LOC101079010,LOC105939483,LOC106946826,LOC103153258,LOC106910155 non-coding upstream 419873 13487920 ~ 13491997 (-)
LOC120560438 dnal4,LOC108261343,LOC106591471,LOC108436609,LOC108412416 other downstream 3972 13037270 ~ 13040280 (-)
LOC120560419 LOC103368013,LOC106919771,LOC106522471 other downstream 15859 12990564 ~ 13028393 (-)
trnac-gca_3 NA other downstream 178213 12865968 ~ 12866039 (-)
trnac-gca_2 NA other downstream 181651 12862530 ~ 12862601 (-)
trnac-gca_1 NA other downstream 182487 12861694 ~ 12861765 (-)
G4168 NA other upstream 463706 13531753 ~ 13567266 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other upstream 950855 14018902 ~ 14042510 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other upstream 1644097 14712144 ~ 14719102 (-)
ubl5 ubl5 other upstream 1833099 14901146 ~ 14904229 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other upstream 2358497 15426544 ~ 15685639 (-)

Expression


Co-expression Network