lcmt2 (lcmt2)


Basic Information

Item Value
gene id lcmt2
gene name lcmt2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 30028665 ~ 30045755 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817176.1
AATCTTCAGTTTCGACTACATTTACTAATGTGGACCTTTATAACCCTTTTGTTTTTAGCCGAAGACAAAGATTTccatttacaacaacaacaattgtAAAAATCAAGGTCCAACCAAGCATATTACCAGCGCATTTACAAATATTACCCTTAATGTGTAAATAATCTGAATGGACTTTTGAACGGCATTCACTAACCGAGTTTTACGAGTGGCCTCCAGGCCGCATGGGTGCGCTAGAACACAAACAGGGAGTCACTCGGAAGTCTTTACCACACGAAGGATGTTTGAATTATTTTTGATTCTGCGGACTCCTCTCAATACTGAAaactttcatatttattttgtgcACTGTACAGCGTGTGCCTGAGTTTACCTTCGAAGTGCTCACTGACATTATGCCAACGACAAACAGAAAGAAGCAGGGGAGGGACACCGCGGTACAGGGGACCAACGACAGCAGTGTGGTGAGCAAGGTGTCTGCTGCAGCGCAGGGCTACTTCCAGGATGTCTTCCTCCAACACTTTGTGTGCAAAGCGGCCAGAAGAGCCCCGCTCATCAACAGGGGCTACTATGTGCGCTGGAGAGCCGTGGACCACTGTGTGAGGAGGTTCCTTCACGTTACTGACAACTGCCCAAAGAGACAGATTCTGTCTTTGGGCGCAGGGTTCGACTCTGCGTATTTTCGCCTCCGCGCAGATGAAGCGCTGGACAGGGCCGTTGTGTTTGAGGTCGACTTTCCTGACGTCACTCGCCGCAAGGCTGCCCTGATCAATTCTGATAACACGCTGAGGGGGATGTTGGACCCCCCCGTGACTTCTTGTACAGGGCCTGAATGTGTGTCCAGCGGTCGGTACCGTCTGCTAGGGGTGGATGTTAGAGAGGAGTCCCAGGTGGAAGAGGCTCTGAGTGCAGCGGGGCTGGACTGGGCTGCCCCCACCCTAATTCTCTCTGAAGTGGTGCTTACCTACATGGAAACAAAGTGGTCGGATGCTGTCATTAGTTGGACAGCGAAGCTCCTGCCACAGTCCCTCTTCGTTATGTACGAGCAGATACATCCACTTGATCCCTTCGGTCGGATCATGCAAGATCATTTCCTGAAACTAAATTCGACTCTACACGCCCTTCTCCAATACCCGGACACTGCTGCACAGAGGCACCGGTTCCTGGACAAGGGCtgggagcagtgtgtgtgtctggataTGAATGACTTCTACTTCAGGCTGGTccctgaggaggagagaggcagagtGGAGAGCCTGGAGCCTTTCGATGAATATGAGGAGTGGCACCAGAAATGTTCCCACTACTTCATCCTTACTGCATCTCGAGGCGCTTTGATGACACAGGCTTTACTGTCACAAGCTCCAGTGCCATCCATTTGCCCGTCTTGGAGCCCCACAGCCCTGAGCGTGCAGACCGTACCCGTTAGTATGGAGGGTCTGGGGATGGCTTCCACGTCGGTGAGCCCGGGGCAGGTCCTGCTGACAGGAGGCTCTAGCAGAGGAGGCAGGGGGCCAGCGACTAGGACCCTCCTCTGGGGCCAGAAAGGCTGGAGATCTGTCAGTGTAGAACCATCAGTAGATTTGGGGGTTCGCCTCTACCACAGCGCTACCTCTCTTCCTGGAGGAGGTGTGGTGGTATACGGGGGCCGCTCATCTCCGCTCAACCCAATCGGAGGCCTTTTCAGAGTAACCCTGGACACCGGCGGCCCCCCTGTTGCACTCGACTCAGAGGACCGAGACACTGCGAAACTTTGTGTGGAGCAGATGGTCTGTACGGGGGAACCACCAGCGCCACGATGGAGGCACACTGCTACTGCTGTCAGTCACAAAGGTAAAGACTTTCTGATTGTGTTTGGTGGAAAGAATGAATCTGAGGCAGCTCTGGGTGACTGCTACTTCCTGTGTCCAGACCAGCAGCACTGGACTGAGATCCCGGTAGAGGGCTCAGCACCGGAGGCCCGCCATACCCACTCGGCATGTTCATATCAGGGAGGTGTGGTGGTGTTTGGAGGACTGGACCGAAGGGGATTACCACTGGGGGACACAGCCCTGTTAAGGCCAACGGACAGAGGCTTCTCCTGGGAAAGAATAGAGGTGCAGCCCTCTCCTGTTCCCAGGTACTCTCATTCTGCCCATTTGATTGGTGAAAAGCTGCTTGTGGTTGGTGGAGTTTGGCTGCATTCGGATGGTGTACCAGGTGTCGCCATGATCAACCTCACCACGCGCAGCAGTGTGGAGTTCAGCCTGGACACGACGTCGGTGCCCTGGCCTCTGATGCTCCACTCGTTCTGCTCCGAGCTGACCGACTCCGAGGAACCAGAGCTGCTCCTGATAGGCGGGGGAGGAAACTGTTTCTCTTTTGGGACTCACTTCAACCTTCAGCCTGTCACTGTGGACCTCAGACCTGCGCTGGGATGAAGTAAAGTGTTTCTATGAAACGGTTAAGCCGCTCAAATCAATGACTTAAAAACGGTGGCGGTCCGAACTCCAACCATCAGTCATCTCAGACAGGACGAAATGGATAAACTTGAACTATTTGGAACAGTTTGAATAGAGCTTACTTCTCCAGACACGTCTTATTGTTAACTGTCCCCTGGCGTGTGTTATGTCTAagtaaagcgtgatttatgcttctgcgttaaatcgacGCAGTGggtacgtacgtaggtacgtggagaaacggaccctacgccgtagcctgacgtgcaacTCTTGAAAGATTTTACTAAACAGAAATCACAGAGGAGACTGCTATTCTCttagagatcgacgcacacaccaacgcacaggTATAAACTTTAGGCCACTtgcgtaggctacggcgaaagctctgcgtggagcctccgcagagccataaatcacgctttagaAGTATACAAGGGCACAAAAGGTTCGAAAGACATTAAACAACTCATGTTTGGGAAATCCAAAGAAATGTCTTCAGTCCGCTTTTACTGGGCAGGTTGTTTTATTCGTGAGACCACAGTTCAAAATCACAAAATAGTCAAATAAAAATCATAAGTCAAATATCGA

Function

symbol description
lcmt2 Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation and wybutosine biosynthetic process. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to human LCMT2 (leucine carboxyl methyltransferase 2).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: tRNA wybutosine-synthesizing protein 4

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K15451 PPM2, LCMT2, TYW4; tRNA wybutosine-synthesizing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817176.1 True 3035 mRNA 0.52 14 30028665 30045755

Neighbor

gene id symbol gene type direction distance location
dnajb11 dnajb11 coding downstream 22727 29995027 ~ 30005938 (-)
satb2 satb2,LOC103367524 coding downstream 64345 29900255 ~ 29964320 (-)
rftn2 rftn2 coding downstream 350499 29643664 ~ 29678166 (-)
hspd1 hspd1 coding downstream 402594 29615962 ~ 29626071 (-)
sf3b1 sf3b1,LOC100380860 coding downstream 425928 29584942 ~ 29602737 (-)
dbr1 LOC107551939,LOC101160048 coding upstream 13412 30059167 ~ 30070582 (-)
tnfsf11 LOC104934832 coding upstream 328446 30374201 ~ 30387537 (-)
akap11 akap11 coding upstream 379885 30425640 ~ 30452231 (-)
dgkh dgkh,LOC102792327 coding upstream 412313 30458068 ~ 30543839 (-)
rgcc rgcc,LOC103363473,LOC104939188 coding upstream 664946 30710701 ~ 30719451 (-)
G128032 NA non-coding downstream 171339 29857069 ~ 29857326 (-)
G128031 NA non-coding downstream 207869 29808246 ~ 29820796 (-)
G128030 NA non-coding downstream 213900 29812489 ~ 29814765 (-)
G128028 NA non-coding downstream 231144 29797099 ~ 29797521 (-)
G128027 plcl1,LOC107374039 non-coding downstream 233355 29792610 ~ 29795310 (-)
G128103 NA non-coding upstream 3737 30049492 ~ 30050853 (-)
G128134 NA non-coding upstream 53942 30099697 ~ 30100361 (-)
G128139 NA non-coding upstream 223181 30268936 ~ 30302930 (-)
G128145 NA non-coding upstream 258359 30304114 ~ 30306353 (-)
G128147 NA non-coding upstream 283917 30329672 ~ 30331533 (-)
G128026 LOC103372056,LOC102784025 other downstream 245460 29781954 ~ 29783205 (-)
G128025 plcl1 other downstream 251232 29777040 ~ 29777433 (-)
G127923 LOC103391627,LOC101464856 other downstream 635522 29387976 ~ 29393143 (-)
G127924 LOC103391627,LOC101464856 other downstream 640093 29388070 ~ 29388572 (-)
G127903 LOC101464856 other downstream 681776 29346079 ~ 29346889 (-)
kcnh3 LOC102215587,LOC101479217,LOC102787819,LOC100702937,LOC102305604 other upstream 54751 30100506 ~ 30279530 (-)
G128435 NA other upstream 1443267 31489022 ~ 31491705 (-)
LOC120569384 rps24,LOC102780737 other upstream 1836974 31882729 ~ 31936558 (-)
rubcnl NA other upstream 2834511 32880266 ~ 32929852 (-)
G128629 lrch1 other upstream 2896056 32941811 ~ 32942383 (-)

Expression


Co-expression Network