LOC120571183 (LOC103370324,LOC102309436,LOC102214173)


Basic Information

Item Value
gene id LOC120571183
gene name LOC103370324,LOC102309436,LOC102214173
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 29818666 ~ 29832361 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819940.1
GTTGGATACCCTCTGGGTTCTGATGGGTGGTTAGAAGCCGAAGTTAAAGGGATTACTCTTGGCTGTCGAACGCAGGAGGTTCTTGGAGTCAAGAGGGAGCACCTGACCAGCGGTGGCCTAACATCTCTTCCCAGAGACAGCAGGTTCTATCAAGATACATCAGCCCAGCTTAACTCGCCATGGAGCCAATGGCACTGTTGTATTGAAGCAACAAACAGCTGAAGACTTCAGCAGCACCCTTTGTGTGCTTCGGGAATACCGCCTTGGATTTTGTACTGCTTGTCGTTCAAAAGGACTTTTTGTGGTCTGGGAGGAGTTTCCAGCTGCAATTTTATGGTTGACATGCGTTACCCCACCACCTTTCAATCCGGCACTTATAACCTCTATTCATGGTGTTCGTCGAAACAAAGCTAAGGCCTAGGAGGACTGTCATTTGTCGAGGAATAACTTGGACTCAGGCCAAACATGGCCAGAGACGTCAGTCCTCTGAGCCTCATGCCTCTGTCTGCAAAACACCACCAATGGGTTGGAGCCTCTCTGGGGTCTATCCTCCCCTTCTCCCCCTTACGTTCTCTAATTTTTTACTACTTCCtgtcatgtgcagcagcagcaggaagttTGCCTGGCATAGAATATGACTATGGCATTAGCCCTAAATTTGTTTGCACCccaattcccccagaagcagaccCCAGCTGCTATTCGCCACCCAGTGTGCCCCACGGACCGAGCAGTAACGGTCACACAAATGGTCACAACGGCAGTAGCCGGCGAGGCATGATGTCCGAAGAGGCCAAAGCCACCATCTTGCACCTGCGCGAGAGCCTTGTGAGGCAAAAGGAGACCATCCTGGACCAGCGGGAGACCATCAGGGAGCTGACCGCCAAGCTCACCTTGTGCGAGGGCTTCGGTGGCGGTCACCACGGCACCAACCACCACGACAACCACCACGACAACCATCACGATACCCATCACGATACCCATCACGACAATCATCACGACGGCCACCGCGACGACCACCACGGGCCGCACAGCAGCCACCACACGCCCGCGTCGTCGCACCACGGTTCTTCGCCGTATCACAGCAGCGATCACCACTACTCCCACGGCGGCCACAGGTCCGACCCCCACCACAGGAAGCCCTCGACATACGGAAAGCACAGCTCCTTCTCCCCTGAACAGACGGGCAAAACACTGCAGACACTGAAGGAGAGGCTCGAGAACTTGCAGGCCAGGAACTCCTCCAGCTCGTACTCCAGCTCGCTGAGAGAACTCCTCCAGCGGAAGATCACCGCCCTGGAGGAGCAGCTGCACAGCTACTACAGAGATACCCGTGACTACGGTCACCGGGACGACCACCATGACGATCACCACAACGTTCACCCCGACGACCACCACGGCAGCAGCCACCCTGACGACCATCACGACGACCACCACGACGACCACCGTGGTACCGGTCACCGGGACGACCACCACGACAGCCATCACGGCAGCCACCACGGCAGCAGCCACAGGAACAACCACCGCGGCGGTTACCATAATCGCCACCACGACCACCACTACGACTGGCACAACAGCCGGCAACGTGGTCACTATGGCAACCATCACAGCACCCACCATTACGATGACCACCACCACGACGATCACCACGACTATCACCCTGAGGATCACCACGACGATCACCACGACTATCACCACGGGCCTGGACACCACGATGACCACCATGAGGATCACCATGACAATCACCACGGCAACGACCACCATGAAAGCCGCCACGGGATCGATCACAGCCCACGGCGGGTGCTTTCCAGCGGCAAAGAGACGAATCTGCGCGGCGTGGGGCACGGCAAGCTGGAAACAGTGCTCAGCCAGCTGCACCATGGCAACACTGACTCTGGAGTCCACAAGAAGTTGAAGAGTCCCAACGCTTTCCTGCTCGACTTCCCCATGAAGACCAATTACATGTACGCCAGGATGAAGCGGTCAGTGGTCAACGAAATCTTCGCAATGACCATCTGCCTGCGGCTGAAGGCCGGAGCAGGTCCTGGCCTCGGTACTCCCTTCTCCTACGCTGTACCTGGACAAGCCAATGAGCTGGTGCTCATCGAATGGGGCAGCAACCCAATGGAGCTGCTAATCAACGACAAGGCGGTGGCAATGCCAATAACCATGACAGATGGGAAGTGGCATCATGTGTGTATGACGTGGACGACACGAGACGGTGTCTGGGAGGCCTACCAGGACGGGGTGAAGAAAGGCTCGGGACAAAACCTGTCAGCCTGGCACCCCATTAAACCAGGAGGGACCTTCATCCTGGGCCAGGAGCAGGACACAGTGGGAGGCCGCTTCGACGTCACTCAGTCCTTCATGGGAGAGTTGTCTGATCTCCAGTTCTGGTCCAGAGTCCTGACGCCCAACGAGATCTACAGCCAGGCCACCTGCGGAGGCCACCTCATTGGTGATGTCATGTCCTGGTTGGAGGAATCAGTGGAGCTCCACGGAGGGCTCACCGAGGTGCCCTTTGACCCCTGCCACTAAGGACTGACACTGGACCCCAACACCGAGAGCCGTAGCATCATCATCCCAACATATTTCAATTACATGCCCCCCCCGTCAAAAATAGTTGGAGAGTGGGAAAATGCTATTTTGTCACGGATCAAAGATGGGGGAATGATTAATTTCATTGCTTGCTCAGGTTGCAAGCTCAGCCATGGGCAACAGGCAGAGCAGGAGGAGTTCTTTTgctttttctatatatttttgcCATTCCTGTCTGATCTTTCTGCCTTCTCCACCTACACGCTCACTTCTTCGCTCTGACGCTCTCAGCAGGATGACTTTGAAGGCTCCAAAGAGCGCAGGGCTTTGGATTTACTGGCTGTGTGGTCATGACTATGGCTGAATCTCAGGGATCCAACACACATAATAGGATTTCATTCCATCGGAACAGGTCCAAAGGTTGCTTGTTGCCATTAGCTCCCCATGCACTAGCTTGTTTTGTTTGGTATGTGAGCAACATGAGGTGAAAGAGTGGTGAAAAGCCCCAGAATACAAATGAAGCCGCACTGAGACCTGAACCGTGATGATTCATCCATGTTGCTAGAGTACAGACAATCGAATATCTGCTCATTGTTTTGTCGAGACAAAGGAATAATGTTGTTTCGGGGTGTTTTTTACAATGTTGGTCAAATTTGGCACAAGCTACTGTTGTTGATTTTGCACGTTGAGATTGTTGACTGTTTTGTACTAGTATTTCATATTGAAAACTCTACTTTTTTTGTAGACAGAAAACTGCTTTCGTGGCATTCAGAAAAACAAACTGTATCCATGTATGATGTGTTCTTTATAACCGTGAGATTACATTTTGTCGATTCAGGAATGAGAATGacgttttgtttctttgttcaaAAGTCGGCCGTTGCATAAGAGCACCGCGGGCGGCTCAATGTCAGACATGACAGGCCACCTGGCTCCACGGTCGCGGTGTTAACCGTCCCTCAACATGTCACCGCGGTAATGCTTATGTCTCCTCGGCAACCGGTGGCTTACAGCTGGATTTACCTATGGACAACTGATCTGATCCTGCCTATTTCGGACCAGCTCAAAACCCATGGCAGAgtcagacacactcacacacactctgcataCACTTAGAGAAGATAAAGAGGTGAAAGGAGACTTTGTTGATCTCTGTTTGTAGCGGCACCTTTACGTTTTTTTAAGAAGAGGCTTTTTGTACATGTAAATTACATCAGATAGTCTGTTTTTAATTACTAAAAACATGTATTGTGGCATTTCTCACAttgtaaataagtaaataagtacATAGCACTTTCTCAACCCAATGTTAACCCTGAGGTTGTTTAAGAGCAACTTTTTGGAAGTAAACTGTTTATTATTCGTTTATCATAACCCTATCCCCTCTGAGTTAAACTCAAAGGGGTTGAACTCTTTTTATTGATAGTCAAAACAAAATGGGGTATTttgttgttgccatggtaataGAATCTCTCagcatcaggaccacatcatcgcACTACAGCTGTGAATATCTACAAAATGTTTCTTCGACTGTAACGCCAAGACGAGCAGCATTTTTAAAACATGCTCCTGTTTTCCTCTCATGGTAGTGGGCCAAATGCATGTGACATTTGTTTCATATGTTGCTTCTTCTGTCTAATGTTCTATAGACATCAGTTTAAACACCCCCTCCTTCGACCGAACTGTGTAGTGTTAggctgaatgaaaaaataacttGCTTATTCTCGCCTTTGGTGTACACTTTAATgtttattagttgttttttttatgtttattcttGTCTCTTTGGCTGTAAATATTCAAAGTATTGCAGTGTGTTCAGGCAACAGTCCCTCCCTCATGTGTAAGCCAAAACTATAAACTGAATTGTAAAActtgaaagaggaagaaaatccACTGTAAATGCTGTCAAATATTTGTAAAGATGTGAGGATTTTGattaaaactatttaaaatatgttATGAATTCAAA

Function

NR:

description
PREDICTED: neuronal pentraxin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819940.1 True 4513 mRNA 0.50 5 29818666 29832361

Neighbor

gene id symbol gene type direction distance location
LOC120570814 cacng8,LOC108242680,LOC106519608,LOC104958027,LOC101473306,LOC100708375 coding upstream 62759 29732913 ~ 29755907 (+)
cacng7a LOC100708651,LOC101075242,LOC101474381,LOC101173155,LOC103370323 coding upstream 99331 29670607 ~ 29719335 (+)
grin2da LOC108242688,LOC102307452,LOC101474831,LOC102206987,LOC103360328 coding upstream 207170 29434728 ~ 29611496 (+)
LOC120571539 LOC103366048 coding upstream 664957 29140196 ~ 29153709 (+)
shisa7b LOC103366046 coding upstream 683888 29083468 ~ 29134778 (+)
LOC120570845 NA coding downstream 56512 29888873 ~ 29912482 (+)
LOC120570844 LOC102290737,LOC100707037,LOC101469711,LOC103146442 coding downstream 101054 29933415 ~ 29982780 (+)
LOC120571887 NA coding downstream 234834 30067195 ~ 30069038 (+)
LOC120571888 LOC107086110,LOC104936375,LOC103356842,LOC104962367 coding downstream 245214 30077575 ~ 30089918 (+)
iffo1a NA coding downstream 259413 30091774 ~ 30129944 (+)
G137485 NA non-coding upstream 22174 29795932 ~ 29796492 (+)
LOC120572018 NA non-coding upstream 476336 29340018 ~ 29342330 (+)
LOC120572017 NA non-coding upstream 480037 29334778 ~ 29338629 (+)
G137391 NA non-coding upstream 537948 29279889 ~ 29280718 (+)
G137389 NA non-coding upstream 546882 29271575 ~ 29271784 (+)
LOC120570849 NA non-coding downstream 81634 29913995 ~ 29928513 (+)
G137526 NA non-coding downstream 84356 29916717 ~ 29916921 (+)
G137527 NA non-coding downstream 89207 29921568 ~ 29922337 (+)
LOC120570850 NA non-coding downstream 162827 29995188 ~ 30039612 (+)
G137547 NA non-coding downstream 300594 30132955 ~ 30190325 (+)
LOC120570925 LOC102307141,LOC101475123,LOC103366049,LOC102237376,LOC103146430,LOC107394395,LOC108242668,LOC102779594 other upstream 617641 29163007 ~ 29201025 (+)
LOC120571364 LOC100710000,LOC101476588,LOC102306017,LOC102215018,LOC103366045 other upstream 757305 29020235 ~ 29061361 (+)
G137239 NA other upstream 951990 28864142 ~ 28866676 (+)
LOC120570924 NA other upstream 965138 28846607 ~ 28853528 (+)
LOC120571342 LOC102209207,LOC103366041,LOC100710525,LOC101479869,LOC102301554 other upstream 1030105 28775212 ~ 28788561 (+)
LOC120571184 LOC104962268 other downstream 1082 29833443 ~ 29848210 (+)
LOC120571185 LOC105025867,LOC101068015,LOC100697091,LOC104962269 other downstream 17442 29849803 ~ 29855470 (+)
LOC120571186 LOC104962270,LOC108242670,LOC106519599,LOC101074355,LOC102221922 other downstream 25280 29857641 ~ 29887146 (+)
G137551 NA other downstream 319258 30151619 ~ 30155115 (+)
LOC120570927 NA other downstream 684197 30516558 ~ 30517890 (+)

Expression


Co-expression Network