ubash3ba (ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361)


Basic Information

Item Value
gene id ubash3ba
gene name ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9020715 ~ 9070259 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU455042
CACGGAGGCTAGAAGTGGCTTTGGAAATGATCGCGTCTGTATTTTCTCCTGCCGCGTTGGGCTGCTGGGGGCTGAGACAGATCCACAGCAGCAAAATCGCCTGTATCATATAACTGGCGCAAAAGTCACTTCCaagcctttgtgtgtgtgtgtgtgtgttgtgtatgtgtgtttatttatttattattattattttttttgcaatgatGATGGCTTGAGCTCTCCATCATCAGGAAGCTGTAGAGAATAATACATCGTGTCTCCAGAACGCGCAGTTTCCTAATGCGCGCTTGGCTCGAGCTGCGGTTCGTGTTGTGATCCAGATCTGAATGTCCACCGCATCCGGAGCCATGGCAGGGAAAGAGGAGCAGCTTTACGCCAAAGTGACTCCCCGCAGGCAGCGCCAGAGCCGCGCAGGGACCCTGAAGCACGGCTCGTGCCTGGACGTGCTGCTCAGCATGGGCTTCCCCAAGACCCGAGCGCTGAAAGCATTGGTTTCGACCGGTGGCAGAAATGTACAGGCGGCCTGTGACTGGTTATTCTCTCATGTGGACGACCCGTTTCTTGACGACCCCTTGCCAAGGGAGTTCGTGTTGTACCTACGCCCGAGCGGGCCGCTGCTCCATCAGCTTTCTCAGTTCTGGCAGCAGAGTCGCGTCATGTGTGGCAAGAACAAAGCTCATAACATCTTCCCCCACATCACGCTCTGCCAATTCTTCA
>XM_034300907.1
GGCGAGCAGCACGGAGGCTAGAAGTGGCTTTGGAAATGATCGCGTCTGTATTTTCTCCTGCCGCGTTGGGCTGCTGGGGGCTGAGACAGATCCACAGCAGCAAAATCGCCTGTATCATATAACTGGCGCAAAAGTCACTTCCaagcctttgtgtgtgtgtgtgtgtgttgtgtatgtgtgtttatttatttattattattattttttttgcaatgatGATGGCTTGAGCTCTCCATCATCAGGAAGCTGTAGAGAATAATACATCGTGTCTCCAGAACGCGCAGTTTCCTAATGCGCGCTTGGCTCGAGCTGCGGTTCGTGTTGTGATCCAGATCTGAATGTCCACCGCATCCGGAGCCATGGCAGGGAAAGAGGAGCAGCTTTACGCCAAAGTGACTCCCCGCAGGCAGCGCCAGAGCCGCGCAGGGACCCTGAAGCACGGCTCGTGCCTGGACGTGCTGCTCAGCATGGGCTTCCCCAAGACCCGAGCGCTGAAAGCATTGGTTTCGACCGGTGGCAGAAATGTACAGGCGGCCTGTGACTGGTTATTCTCTCATGTGGACGACCCGTTTCTTGACGACCCCTTGCCAAGGGAGTTCGTGTTGTACCTACGCCCGAGCGGGCCGCTGCTCCATCAGCTTTCTCAGTTCTGGCAGCAGAGTCGCGTCATGTGTGGCAAGAACAAAGCTCATAACATCTTCCCCCACATCACGCTCTGCCAATTCTTCATGGCTGTCGAGGCACAGTGTGTGAGGTTCCCTCCCCTTCCACTGGAGCTCTACATCTCCTCCAACTTCATTGGCCTCTTTGTCGAGGGACAGATGGCTGAGGTGCTGGCGAGCCtttttatgcctttttttttctctctttaccACACAGACGTCCATGTGGAGCCACATAAGAAGCAGCTTCACGTAACTCTGGCCTACCATTTCCCAACCAATCACCTCACCTCATTGGAAAAGCTGGCTAGGGGAGTGGACGTGTCTCTGGGCTGCGATTGGCTCGCCGTTCTGTTCTCACGGGACATCCGATTCGCCAATCACGAGACATTGCGGGTGATGTATCCGTACACTCCCCAGAATGAGGACGAACTAGAGCTAGTGCCAGGAGACTTCATCTTCATGTCTCCAGTGGAGCAGGGTAGTGCCAGTGAGGGCTGGGTTTATGGCACATCAATGGGCACGGGGCTTTCTGGCCTGCTGCCTGAGAACTACGTCAGCCGAGCAGACGAGTGTGACACATGGGTGCTTCATGGGTCCCATTCTTTCCTCAACTGTACCTCCCCAACTGTAGGATTTGGTGCAGTAGGCGGGTCTGTTTTTGATGGACAGCTGGATGGACGTCTCCTTGATGACCACAGCTCAGTGGAACAACACCCTCTGAGTGTCGTATGTCAACCGATGCAGGTGCTACGCACCAATAGCCAGTCTCGACTGCCCAAGAGAACCCTGTTTGTGTGTCGTCATGGTGAGAGGATGGATGTGGTGTTTGGAAAACACTGGATCACCCAGTGCTTTGATGCCAAAGGTCGTTATGTCCGATCCAACCTCAATATGCCGAGTAGTCTTCCAGTGCGGAGTGGAGGGTACAGGGAGTATGATAAGGACTGTCCTATCACTGTGTTTGGAGCCACACAGGCTCGATTAGTGGGAGAGGCCCTGTTTGAGAGTCACACAGTTATTGACTTTGTGTACTGCTCGCCCTCCCTGCGATGTGTGCAGACAGCCCATAATATCCTCCGAGggCTTCAGCAGGATGGGAAGACTAAAATACGAGTCGAACCTGGACTCTTTGAGTGGACCAAATGGGTATCGGGGTCATCCTTACCCACCTGGATTCCACCTACTGAACTGGCAGCTGCTAACTTTAGTGTGGACACAACCTACAGACCTCATATTCCCATCAGCAAGCTGACTGTGTCAGAGTCGTACGACACTTACATCACCCGCAGTTTCCAAGTGACGCGGGAAATCCTAGCCGAGTGTAAAGCCCTGGGAAACACAGTGCTGATAGTGGCCCACGCTTCGTCTTTAGAGGCCTGTACACGCCAGATGCAGGGCCTCAGCCCACAGAACTCCAAAGACTTTGTGCAAGTGGTCCGGAAGATCCCGTACTTGGGTTTCTGTGCCTGTGAAGAGATGGGCGAGACGGGGGTGTGGCAACTCGTGGACCCACCCATCCTCCCCCTGACCCATGGGCCCAATCATAGCTTCAACTGGAGGGAAACTCTGCTGCAGGACTGACAGGCTCTGCCTTCTTTCGGTTGGCCCGCCTTTTAGCTCTTCTCACCAAGGGCAGCTGAGAATCACGCTGTCATTCACTCTCTTCTTCCACTCTGTGGCGCTCCTGCACCATTAGATCTTACACAGAGCAAACACAGGCTTCCATACAGCAGCCTCTCTGCTGCACGATTCCATTCTGATTCTGTACGTCTCTGTGTGTTGCAGCAATGCTGTCTGTGTCCATAACTACGCTCATACATTTATGTCATGCCCTTATTACAGGGCATGTTTACTGCTTGACTGTCATGGATTAGTGTGAAAGTTCAAGGCTGCTATGTGCAGTAGCTAAAGTAGCCGATGACTTCCACGGGTTTCCCATCTCAGCAAGAGTTTCACGCTAGCTACATCAAAAGTACATCAACCGACGcttccaagatggccgccatcCTAAGCAGCCTTGCTCACCCTCGTAAAACTGATGCCGCAAAGGGAACATGGCCGCCGCCAGACACACTGTGAGAAAAGCAGACATGTTCAGCGTTTTGCACCAAGCTTCCAGGCTACTTTTCAAATATCTTGTCAACCGAAATCAAGCACAAGAGACGAAACTCAAGCATGACAATCAGAAAGGAGCAGAGCGGTTGGGAAGAAGCTGACATGTCGTCTCAGACAATGAGTTCGCCTCAGGATGAAGTTGGTATAGGGCTTATTTTAGCAGTTCATCAATGTTGcatgcaaaatattaataaaccaGGGCTTCTCAAACTTTTGACAGCTGGGGTCccctttaactataaaataaattccatgccTCCTCTTAGtttaatccaactattcaaataaggttaattatttaaaaatatgcataatattttgcctatttattgCAGCCTTGGTTTATAGGCcagcttgtttttgagttactgatgTTTGGACTAAACCCATTCAATACAAATGACATGTCAAACAGGTCAATAGTTACGAGAActcaataatacatataataactttaataataattggTTGTGACTTATATCACTGTAacgaagtaaaaaaaaaataaaagaaaaacatagacCCCGGGAGCCATTTTGAGAACCAGTTGTTCAAACAGTCGGGTCAAAAAGTCTGAGTCGACCATCAAGCACTGTTTTGAGTTCATCAGCAGTTCTATTGAAACTGTTTGGGAATTCATCATACACCATTTACTTCAGTAAATATAGtgatatacactacatggccatgAGAATGtggatcatcacacccatatgtggttcttccctaaactgttgccgcAAAGCTGGacgcacacaattgtgtagaatgtctttgtgtgctgtagcattaagaataTTCCCCATTACTGAAACTAACGGGCCCAaaaatgttccagcatgacagcgCCACTGTGTGCAAAGCAAGGGCCATGAAGCCATGGTtgcagtggaagaacttgagtggcctgatgctaatgctcttttggctgaatgagcaaatccctacagccacgctccaaaatcaggtggaaagccttcccagaagagtggcggttattataacagcaaaggacaAAAATCTGCAaagggatgttcagcaagcacatatgggtgtgatggtcaggtgttcacatacttttggccatatagtgtatatgataCATTCAAATAGTCACATATATACATCCAGAACACAGAATTAACCCATGATCTTAACTCAATTACTGTTCTATATGCGTTATACGTTATCACACTTACAGCGGTCAATAAGAACGTTTTTATAAGTTATATAACACATAATAATGTAATCTTGTCagcaaaatataatttctaTTAAAATGCTGAAAGCAGTTCTTGGTAACAGACTCAGACTTTTTTTAACCCCACTATATCATGGTATGTAAATGCTTGATAAGCTCTTTATGAGCAACAGGTCAATCAGGAAGCCTTACTTTTTGGATAGGAACTTGGAAAGTAGTCCACAAACAAGTACACTTCTGTACATAGTAGCACACATCAAACTATTTCATGCTTTTCGTTCTCAAATGACAAGCAtataattgcatttatttatctattcatAGCATAACTGCTAAGAATTTTTTCTGGTGCTTCATATAAAgtatttttgcttttctctctgttttgcaAGCAGAGGAATCAAACTGTagcaaaatttaaaacatgcaGTCTCCTCCCCcttatttttgctatacacaTCAGCCTTCGCAAGTTACACTCTTTCCTGATCCGTTTGTGTAGTTTCGGGTCTTATGCTAGTTTAGGTGTGAACATGAGGTTGAACAACATGCCAAGTCTATATGTTCTGTAtcacattttatgatttttaacatGAATTTTGTGAATCTGTTTGATGTTGATGTACCAAGTATGGTTTCAGTTTACTGGATGGTTATGCATAATTTGTCAAACTAATTTTTATAATCAGAGGCATGCATTTTTATCTTTGTGTTATTAACTGTCCCTCAGTTGTGATGTGAGCCtcaaactaatttttttttgtcttctaaaTAATGTTATGTCTTCTAAATGATGTTCATTTCTTCCCAGTTATACAGCGAGGAATTGATTACCTTCACACTTATTTAAAGTTCTTAAAACTTGCTTACAGTCGTGGTGACTTGAAATGTGTCTTAGCTCATTGGAAAAAATTGCTTCCTGTGAAGCTGTATATGTGGGtttaatgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagattactcTACCTGAGATGAAAATGCCACTTGATGAACATAAAATGCCAAATTATATAGCGATCGTTCTTCCAAAATGGCTGCATTCACACATCATTCACATATCGCTGTAGGTTAAAAAGAGCTGGAGGAAATGCTAATGGCTCCTTAATGCTAATAAGTCAACCATGCACTTGATCGTGAGAGAGGATGTCTCAGAGCTTGCTAAGATTCTGAATAGTAGCCCCGGGTTTCACTGCTGTTTTAACACACGCTTGTCAGCTTCTCGTCGCAATCACCCACATCTCACGGGTGGCAGCTCACGCACTCAATTTTTCCATGAACTTCTTAGCAGCAAGAGCAATCATGTACTTGGACGCATTTCCTTCCCAGTTTGTACAGGCTGTTTCATTTATATTGCGTACAGCATTCGGGTTGCTAACTAGCCTGCTTGCAATTAGCCGACAGTATAAAGTAATGAAGTTGTCAGCTATGAGGTACAAAAGAAAACGTTTGCCTTATAAATTCCAATCTGAAAGCAACAATTCAATGTTACAttgacaaaaaatattatatagcaggggtattcaactaaaatttgtaagttccttgcttacaaagatAACTAACGTGACAAAATGGTGAAGACGTATACCATTTAATGCttatgtattaataattattaatgatttttgCCTATGAATAAGAGGAattgaagtggttatgttttgtatgttttagcACCACTCTCTTTTTGTCATGGATTTAAttttaaacaagccatgtttacagttatctaatcagacCAAAGAtggtaaattaaaattaaacctgTATGAAAGTCTGTAAAAAACGCTCCCCTTTTCTGACCTAATGTCTACAGCCCAGTATCTAGTCTCTAGACCGATGAGGTACCTTCAGCTAAATAGTTTACGTAATTGTATGTGATTGGCTGCAACATAGGATCTCTTACAGAAACCATGCTGTTCCATGTTTCGAAAATTAAAGTCAGTGAACTATGGCCATGTTTATCGcttctgctacagtatttttcaaaTACTCAGTTTGGTGTGCTGAAATACTTTACTGGATGTATGTCTGGACCATGATCCTCTAGCTGATGATCCCTGCTCTATATTCTTGTGAACAATTATAAACAGCTTTATTCACGTTTTTTGTTAACTTGTTAACGTGAATCAAGCGTTTTTCCAAGTGGTCACACTTGGAAAAACCCTTGGCTTAAGTTCATAAACATTCCTAAAAGTAGCAAAGAGGATTCAAccaagagaaagcagaaaaagcCGACAAGTGTGGGTTCAAAACAGGAGGAACCTGGTCTTAAATAAAGCTTCACCTGTTTGGtctatttagtatttaaatgaaagaaatttcATTACGACAAGGTTTAGAACAGTGCTGAATTACAAACTATAGAAGCAAGAAGACAAACTGAAGCAAACTTTATTCAATGTTTTATCTGGGAAGTGCAAAAAATGAGGCTGTTGAACTAAAACATACAACCGCAGATAGGAAGCCTAAGTATATGAGTAATAATAAGCATATAAGTAATAAGTTAGTACACAAATGATGGCAGGAATGGCAGATGGATGATGGTGTCATCAATAACCTTGTGAGCTCAGTTCAGCTATTGTGTGTAAgccatatattcatattcaatgACATGCTGTTTAAGCTGATATTGTTACTCACGGTCATTAAAGTGCAGCTTCTGACCTTGGGTCATGTAGCTCTTATCCACATGCCAGCTCATGCATGCGTGAAGCCACACAATTCACTCCTTACAGGTAACTTCTTTACTTGAAACAAGTACACACAAGTATACTGCAAGTTGTGTTctgtgtaattaaattattactttGATTCTTATGCATTCCAAGGATGTGTTCCAGAAGATTGTTATATTTTGCTGCAAAGGATTATCTCTGTAAATTGTTTCAGATTATTTTGCGACTTATCTGCTTAAAAGATATTAACaatgtttgaaaataaatgttttatcacCATGA

Function

symbol description
ubash3ba Orthologous to several human genes including UBASH3B (ubiquitin associated and SH3 domain containing B).
ubash3b Enables identical protein binding activity. Predicted to be involved in several processes, including collagen-activated tyrosine kinase receptor signaling pathway; negative regulation of bone resorption; and platelet aggregation. Predicted to act upstream of or within several processes, including negative regulation of osteoclast differentiation; negative regulation of platelet aggregation; and platelet activation. Predicted to be located in nucleus. Predicted to be active in cytoplasm.

NR:

description
ubiquitin-associated and SH3 domain-containing protein B-like

GO: NA

KEGG:

id description
K18993 UBASH3, STS; ubiquitin-associated and SH3 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU455042 False 720 TUCP 0.53 3 9036866 9070250
XM_034300907.1 True 6975 mRNA 0.43 14 9020715 9070259

Neighbor

gene id symbol gene type direction distance location
adamts15a LOC108260351 coding downstream 245473 8755639 ~ 8775242 (-)
c27h11orf53 c28h11orf53,cunh11orf53,LOC107597648 coding downstream 430188 8580097 ~ 8590527 (-)
stk36 LOC108260317,LOC108271363,LOC107722762,LOC107598122 coding downstream 441270 8567285 ~ 8579445 (-)
hmbsa hmbs,hmbsa,LOC107717875,LOC107722788 coding downstream 538262 8467213 ~ 8482453 (-)
dpagt1 dpagt1,LOC107587348,LOC107722798,LOC107717886,LOC107597531 coding downstream 604535 8407590 ~ 8416180 (-)
usf1l LOC108259962,LOC103042741 coding upstream 19468 9089727 ~ 9101289 (-)
thy1 NA coding upstream 35317 9105576 ~ 9108781 (-)
si:ch211-215c18.3 NA coding upstream 43185 9113444 ~ 9123479 (-)
timm22 timm22,LOC107740820,LOC107665041,LOC107731058,LOC107688620,LOC107587673 coding upstream 218752 9289011 ~ 9292581 (-)
ptges ptges,LOC107710751,LOC107693847,LOC107587481,LOC107726289 coding upstream 230915 9301174 ~ 9308503 (-)
LOC117596239 NA non-coding downstream 188436 8814661 ~ 8832279 (-)
G383629 NA non-coding downstream 244142 8776251 ~ 8776573 (-)
G383538 NA non-coding downstream 470181 8549013 ~ 8550534 (-)
G383537 LOC108260305 non-coding downstream 473251 8547182 ~ 8547464 (-)
G383536 NA non-coding downstream 474401 8545431 ~ 8546314 (-)
G383841 NA non-coding upstream 25426 9095685 ~ 9097398 (-)
G383893 NA non-coding upstream 101579 9171838 ~ 9172118 (-)
G384007 NA non-coding upstream 116392 9186651 ~ 9186880 (-)
G384008 LOC108260071 non-coding upstream 118726 9188985 ~ 9189524 (-)
G384011 NA non-coding upstream 121996 9192255 ~ 9192454 (-)
LOC113531288 NA other downstream 12029 8919410 ~ 9008686 (-)
timm8b timm8b,LOC107598437,LOC107717885 other downstream 180951 8837678 ~ 8839764 (-)
G383467 h2afx,LOC106516344,LOC107677420,LOC104950138,LOC100693699,LOC108260105,LOC106527800 other downstream 553703 8466359 ~ 8467012 (-)
hinfp hinfp,LOC107677425,LOC107662995 other downstream 622360 8382695 ~ 8398355 (-)
pdzd3b LOC108260234 other downstream 672446 8338508 ~ 8348269 (-)
f11r.1 f11r other upstream 3493 9073752 ~ 9084084 (-)
LOC113531664 NA other upstream 170457 9240716 ~ 9255445 (-)
G384811 NA other upstream 1535731 10605990 ~ 10606272 (-)
G384960 NA other upstream 2008453 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 2476050 11546309 ~ 11627686 (-)

Expression


Co-expression Network