G386849


Basic Information

Item Value
gene id G386849
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13853837 ~ 13854055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU458541
GGTAACTGTTGAGTGTAGCGTAGCAGCACTACTCAACAGTAACACTGCTTTAGTAGGACAGCTTCAGTAGGTTGAATGGTAAGTACAGAGAATGTGAAATtagttcaagtcaagtcaagtggctttattgtcatttcaaccatatacagctagttagtacacagtgaaacacaacaacattcctccaggaccatggtgctacacaaaacaacacagaac

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU458541 True 219 lncRNA 0.41 1 13853837 13854055

Neighbor

gene id symbol gene type direction distance location
lrwd1 lrwd1 coding downstream 1554 13843178 ~ 13852283 (-)
bckdk bckdk,LOC107685622,LOC107681895,LOC106603456 coding downstream 12503 13823386 ~ 13841334 (-)
orai2 LOC108259892,LOC108428392,LOC103026696,LOC107685638,LOC107595471,LOC107710735 coding downstream 33006 13813104 ~ 13820831 (-)
ap2b1 ap2b1,LOC107681897,LOC101171688 coding downstream 40254 13778536 ~ 13813583 (-)
LOC113531678 NA coding downstream 40508 13813233 ~ 13813329 (-)
alkbh4 alkbh4 coding upstream 1164 13855219 ~ 13858118 (-)
polr2j polr2j,LOC107587688,LOC107595521 coding upstream 5084 13859139 ~ 13862155 (-)
castor2 gatsl2,LOC107685562,LOC107595468,LOC107587690,LOC107681899 coding upstream 38157 13892212 ~ 13908457 (-)
LOC113531503 doc2b,LOC107685552,LOC107681901,LOC106603746 coding upstream 67685 13921740 ~ 13989353 (-)
LOC113531468 LOC108260357,LOC108428416,LOC107714896,LOC107691814,LOC107572424 coding upstream 203350 14057405 ~ 14070855 (-)
G386845 pex12,LOC107587685,LOC107681885,LOC107710733 non-coding downstream 25983 13809601 ~ 13827854 (-)
G386814 NA non-coding downstream 181697 13671223 ~ 13672140 (-)
G386763 NA non-coding downstream 330515 13523086 ~ 13523322 (-)
G386730 NA non-coding downstream 504634 13327325 ~ 13349203 (-)
G386705 NA non-coding downstream 530845 13293523 ~ 13322992 (-)
LOC117596230 NA non-coding upstream 21962 13876017 ~ 13876806 (-)
G386868 NA non-coding upstream 57207 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding upstream 61309 13915364 ~ 13915497 (-)
G386873 NA non-coding upstream 76432 13930487 ~ 13930698 (-)
G387048 NA non-coding upstream 485261 14339316 ~ 14340196 (-)
selenow1 LOC103044489 other downstream 173312 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 962542 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 2155293 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 2226151 11546309 ~ 11627686 (-)
G384960 NA other downstream 2769896 11078712 ~ 11083941 (-)
ccdc84 ccdc84 other upstream 1062607 14916662 ~ 14923390 (-)
nrgna NA other upstream 1164838 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 2028283 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 2509439 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 2904185 16758240 ~ 16763476 (-)

Expression


Co-expression Network