G387900 (LOC108260367,LOC108427482)


Basic Information

Item Value
gene id G387900
gene name LOC108260367,LOC108427482
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16080215 ~ 16082763 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU459779
GtcaaattaaaataatcctgattatgttttaaaacaattatatataaCAAACTTGGTATGTAAGGTAATGCATACTTAAATAAAAGCTAATGAGTATAACTTCAGCATAGTGTACtttaaagatataaaacatgGGGTTAACAAACAGAATAACCCATAAACTACAATAACAGAGATTCCAAGAGTACATAACATTTGCTCAGTGTGCAAATTAACTCCTATGAAATACCCTATCAGTATTAAACTATTTCCCTGGGTCATCATCTGGAAATTCTGTTATCATTGGGAATCATTCCACTGGGATGATCACcttgtaaatttaaataataatcaccACTTGTGTGATGCAGTGTAAATTTATTATCAATTACAAACCTTTGCTGTCTTTCCTGGTATTTTGGTGGACTCTAAGTTCCTCTGACTTGAAAAAGTCAATGCTGGCATATGTGTTGATGCTGGAGTTGCTGCTTCCCCCAGGTGCTGTTACACCTAATCCCACTGTTAACCCTTCTCCCAGGACAGTGAAGTGTGGCCCACAAGATCCATCCAGGCTCATTTGAGGGCTGTCCTTTCCAGCCAAGTCAAGGTCAATGTAGTTTAGATCTTGCTCCAGTGACAAAGGTGAAGCCTGGGCTGTAGTTAGAGCTGCCAGCCCAGGACCAGTGCACTGTGCAGCAGATGGCTGCCCAGTAGCCCAAAGGGAACTCTCTAGCCCATGGCATTGAGGTGTGGTGGCCTGGGGAGCTTCCGCAAAAatagaggaggaggaagagggagaaAGTGAGAGTCCTGATGATGCCTTGAAGGTCTCAGAGCGATGCCTCCGTCTTGCTGATGATTCTGCTCTGACTAGTCTGGCACCTTGGTCTAACTTGTGGAAAGCCTTGGGTGAGTGGAAATCCATGTTAACATACTCTGAGGACACAGAGATGGAAGTGGAGAGGGGTGCTGAGAAACTACGGGGCAGATTGGTACCACCAACTTGGCATGAAGATGGTTGGTATAAGGCTCTTGAATGCCCTTGAACCACAGTGCTCCCCTGATCTACACCTGTTACCCCTCTGTTGCACACTCCCTTATCACCCTGATAAACAATACTAACATATTCACCAGAGCTTTGGGGTACTAATGGCTGTATAGTCTCTTTGACTCTAGGTAGGGTGTTGGCTTTGGACATGTCCACAAAGAGACTAAAGGGTCTGCCTTTTCGTTGCTGTGGATGACCCTGTTTCTGGACACCTTGCCCTCGTCTCTGCTGGTGAAAATGGTGGGCTGAATCTTTGGGGTGAACACCCCCTACCCTGTGTCCTGTGCTTGACCTGGTGGCCTTCCCAATTCCACCAGCAGGCAGGGATAGAGGTTTGTCCTCCAAGCTCTCAGTGCTTGCCGAACTGGAAGAGAATGATGAGGAGGACAGAGAAAGGTTTCCACCTCCATTGGGGCTGACAGAAGAGTCAGCTCTATTGGGATAACCACCACGTCCAGTCCTCCTTCCAGAACCACCTTCACCCCTAGAAATCACCTCTGGCTTTCTTCCATCTCCCAAATTATCCTCAAAGCGAGTAGAGAGGGTGGTATGTTTGTAAGACCGTGGAAGGGAAAAGTAGGAATATACTGTTTTGGGCTGCAGTGGATGTTGTTCTGGGTGTGAAGGGGGTGTGCTACAAGCTGATCTGGCACTAATGGGTGACATGTTCATGTAGTCACTACCTGCTCGACTCTCCATGCTGCTCCTGCTACCCCACAAGCACCCACTCATGCCATGTAGATCTGGTGAACAGCTGCTGTGGGGGGACATCATCATGTAGCCCTCAGAGACAGGAAGCCGGATGTTCTGTGGGGGCGAAACACTGCTGTTAGGGGTCATAGTCATGTACTCATCCCCTCCCTTTGGTTCTGTTTCAGACACTGAAAGAGACAGACTTGCAGGAGCTGTAACACCTGGCAGCATAGACATATAGCCACTGTCAATCGATGTGTTCTCCAGACCCTCTTTTGTATTGACACCTTTATTTGCAGAAGTTTCCACCTGCCCACTTGGAGTCGCTGAGCTTTCTGAGCCTCGACGAGAGGTGAATGATTCTCTGCTGGTGCTGCGAGACATCACTGCGTagtcttcatcttcttcatcttcttcttccctGCAGTGAGGCACTATGCGCTCCTGAGCAGTGGAAGGTGGAAGAGAAGTACGCTTGCTAAGTAACCTACGGTCAGCTTCATACTCTCTGCTAGAGGAGCGTCGAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU459779 True 2249 lncRNA 0.47 2 16080215 16082763

Neighbor

gene id symbol gene type direction distance location
si:ch211-284e13.5 LOC108260368 coding downstream 4923 16069205 ~ 16075292 (-)
hsd20b2 LOC108259770 coding downstream 47700 16021513 ~ 16032515 (-)
gnb2 gnb2,LOC108428986,LOC107663406,LOC107661206,LOC107746402 coding downstream 80580 15987177 ~ 15999635 (-)
LOC117596229 NA coding downstream 162276 15915101 ~ 15917939 (-)
mogat3b mogat3,LOC108259936 coding downstream 266685 15803020 ~ 15813530 (-)
si:dkey-17o15.2 LOC108260112 coding upstream 50340 16133103 ~ 16140365 (-)
LOC113531237 LOC108260022,LOC108260023,LOC108259952 coding upstream 131425 16214188 ~ 16215318 (-)
armh3 c28h10orf76,cunh10orf76,zgc:63733,cssa12h10orf76,LOC107551381 coding upstream 135998 16218761 ~ 16220851 (-)
wdr44 wdr44,LOC107548463,LOC107700250 coding upstream 157400 16240163 ~ 16255105 (-)
trnam-cau_50 NA coding upstream 348629 16431392 ~ 16431464 (-)
G387897 si:ch211-284e13.4,LOC108260367,LOC107663370,LOC107599204,LOC107746440,LOC105906577,LOC107661201,LOC108427482 non-coding downstream 2204 16077186 ~ 16078011 (-)
LOC117596269 NA non-coding downstream 32044 16043897 ~ 16048171 (-)
G387861 LOC108260025 non-coding downstream 73145 16005463 ~ 16007070 (-)
G387809 NA non-coding downstream 139513 15877892 ~ 15940702 (-)
G387806 NA non-coding downstream 216668 15862239 ~ 15863547 (-)
G387911 NA non-coding upstream 12185 16094948 ~ 16095158 (-)
G387921 NA non-coding upstream 33858 16116621 ~ 16118056 (-)
G388004 NA non-coding upstream 59163 16141926 ~ 16142320 (-)
G388038 NA non-coding upstream 134255 16217018 ~ 16217648 (-)
G388039 NA non-coding upstream 134960 16217723 ~ 16218160 (-)
gltpd2 LOC108260402 other downstream 192156 15882338 ~ 15888059 (-)
nrgna NA other downstream 1053346 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 1156825 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 2399690 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 3188920 12807201 ~ 12891295 (-)
LOC113531235 NA other upstream 280731 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 675477 16758240 ~ 16763476 (-)
crx crx other upstream 883203 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 1207581 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 1452664 17535427 ~ 17544583 (-)

Expression


Co-expression Network