tmem51a (tmem51)


Basic Information

Item Value
gene id tmem51a
gene name tmem51
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10683078 ~ 10696831 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU154034
AGTCTCACTCAGCAGGAGCAGGAAGACAGTTAGGGGCTGAACAACAGGCACGTTTTTCTTTGtgcttcttctttcttctgaaGTTAGGTGTCCTGTCTCGTTTAAATCTTGAATTCAGCTGCACAAGGTATAGTGTGCGAAAGTATTAGTACCTTTTATCCGCTGAGCTCCTGAGGTAGCTGCTTTGCTGAAGCGGAGTGTTACAGTTCCCGGTCCATCGCACCTCATTACATGCCACCGCGGGGAAGCGATACACTGTAGGATACCACTCCAGGAGCTAACGTCTATACGTGATCGAGCGAGAGTTGAAGAACTGGAAGAGGGAGCATCTGAGGGAGCGTCTGA
>TU154035
GCTGCTACAGAGCACCGTGTTGTTAAAGGTCAAGATCACACACAGCTTGAGCATAACAACCAAACTATGACCTGAAATAGTTAAATGGTGAGTTTAGCTAGCACTTTTTGTGGAATGGCGTTGTCACATTTTGTGTTAGCGTTGATGTTCGTCTGTGCTCTGTGTCAGTACCCTTTATTGGCTGTGA
>XM_026934268.2
TATCAGTGGTCTCAGTGGGCGTGTATCTACAGTAAAGCGCATTAACCGAGCAGTCTCACTCAGCAGGAGCAGGAAGACAGTTAGGGGCTGAACAACAGGCACGTTTTTCTTTGtgcttcttctttcttctgaaGTTAGGTGTCCTGTCTCGTTTAAATCTTGAATTCAGCTGCACAAGGTATAGTGTGCGAAAGTATTAGTACCTTTTATCCGCTGAGCTCCTGAGGTAGCTGCTTTGCTGAAGCGGAGTGTTACAGTTCCCGGTCCATCGCACCTCATTACATGCCACCGCGGGGAAGCGATACACTGTAGGATACCACTCCAGGAGCTAACGTCTATACGTGATCGAGCGAGAGTTGAAGAACTGGAAGAGGGAGCATCTGAGGGAGCGTCTGAGGGAGCGGGAGACAGCTCATCGCTGGACATGTCGTACAGCAGCCAGACTCCCCCCGACtccagcagcaacagcagcagctccagCTCGGCGTCTCAGTATGCTACGGCGGCGCTGGGCGTGGGGCTGCTCGTGCTGGGCATCGTGATGATCCTGTGGAGCGTGGTGCCTGTTGGTGCAGCCGTAAACAACTCTCAGTCTATAGACGGCCAAGTTAAGAACACATCATCAGTGGGCTTTGTCCTGCTGGGCACAGGAGTGGCCATGCTGCTGCTCTCCCTTTTCCTCGGCATACAAAACAAATACCGAGCACAGAGACAACCAAACAGCAACACTAACACAGAGCAAGGACAGCAGGGAGACAGGCAACCAGAAGAAGCCGAGCAGTACACTGTACCCAGCTATGAGGAGGTGGTCGGAAGTGCTCAGTACCCCATCAGCCAGTTCTCTCCACGGCAGAACAGCACCACCCATCTGCCAGCCTACGACGAACTGATGGAGACGACGCAGGACGAGGTGGAGGGTGCCGGCCCATGCGCAGACAAGAATGGAGCAGACAACTCGACACACATTCTCCCCCATAGGACCGACCGCCCCGGACTCAAACTGCTTCCACTTAAAACGAGAAGGAAGAGCTCGAGCAGCTCGCCACAGGTCACTGTCTCCAGCATCGAACCCCTCACTCCTCCACCACAGTATGAAGAAAATCCCCCGGAACTCCTGCCAGCAACACAGTGACCACGTCAGCACGTTCTCTTATGACACGAAGTGTGTGCTGTGATTAAACATGCATGATGATTTGTGCACTAATTCATAATGCGCATCACAGCTTCATTCATCACTATGTACAGGAGCTGAATGTGACAATGACACAGTGTGGTCACGACCGAATAATAATGAAAGCTTCTATATCTCATAGCTGAGGAAGAGGGCACACCGTGATGTACTTCCTGTTTATTATATCTGATAAGAGTGTTTCTGAGCTGGAGATTACAGCAGacaaacagattttaaacagaaacatgGGAATAGATTTCTAGAGGAATCTCTAAGGGAAGTGTAATTAACACACTCAGGTAACATGTGCCACTGTGCTCTGCATTAGTCTTCTTAATAAACTGTGTTATTTAAAAGGAATTTTTTCTATAACCAGCTTCTTAGTCTCAGCCTCAAGAAACCGAGTATCAATGCCAGTTTCTGGCTTTATGTTTTATGTCTTTCATATCCATCcaaaaaagaacatttcaaCCTGAACAGTGTTAAATGATGAAACAGGGTATTTCACTtaacaaataatttatataGTATCATATATTATGGTAATGTTCAAATTAAATTGCTGCTACAGAGCACCGTGTTGTTAAAGGTCAAGATCACACACAGCTTGAGCATAACAACCAAACTATGACCTGAAATAGTTAAATGGTGAGTTTAGCTAGCACTTTTTGTGGAATGGCGTTGTCACATTTTGTGTTAGCGTTGATGTTCGTCTGTGCTCTGTGTCAGTACCCTTTATTGGCTGTGAGACTAGCCCTTGTTACCATAGTGACAAGCAGTGAAGTCAtgaatgtgtaagtgtgtttgtgtgtctcctTAGGAGAGGAGACAGGGAATCTCTTTCACCCTGCAGCTGCATGTtatatcacacactctctcgtTTTTGTTCTTTCACTGTTACTAGTGtgtgtacagacacacacacacacacacacacacacacacacacatttgtcttacaaTCTTTTgtaaggaccttccactgacataaatattaatgcagctaattaatgctatgcgtACAtataatcctaatcctaaccttaacccaagtaaccaaaaggaaacatttttaaaaaaataaaataaaagctgcatttaaaaaattaaaaaattcttcATGGAGACAAACCAAATGCCCCTACAGTATAAaacctgtcagatattcctatcctgtTGGGATCATTTGCCTCCCACATACACAACATGCCCATAAACACAGACTCACAGAGCATTTTCCTATTGTTATTCACTATTTATAGATCTTTATCTTACATTCcttcaccccacacacacacacacacacacacacacacacacacatccatttaATTGTATGGTCTCTACATTTTTTATGCATTCCATATTCCACTGTATTTAAGAGGAGGCTGGCTGATAATTCTCTAAGAGGTATTTTGTTCATGACCACTCccattaataaaactgtatcCTGTTCTTAAAAGGTATATACAGGCAATTTCTGAGAAATGTGACCCACTTTTCCTATTTCAAATGTTTACGGTTGAatcttttcagaaaataaatggaGGCTTTTGGAA

Function

symbol description
tmem51 Predicted to be integral component of membrane.

NR:

description
transmembrane protein 51-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154034 False 345 lncRNA 0.49 2 10683129 10693414
TU154035 False 187 lncRNA 0.43 1 10695834 10696020
XM_026934268.2 True 2730 mRNA 0.44 3 10683078 10696831

Neighbor

gene id symbol gene type direction distance location
kazna kazn coding upstream 1809 10631481 ~ 10681269 (+)
slc16a1b slc16a1,slc16a1b,LOC108425094,LOC107669643,LOC107717534,LOC107711946,LOC107591766 coding upstream 141306 10513439 ~ 10541772 (+)
si:ch211-254n4.3 fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776 coding upstream 403144 10168385 ~ 10279934 (+)
mov10b.2 LOC108265909 coding upstream 605557 10056229 ~ 10077521 (+)
wnt2bb wnt2b,LOC108425044,LOC107562779,LOC107669677 coding upstream 651890 10013340 ~ 10031188 (+)
fnbp1l fnbp1l,LOC107757999,LOC107599010 coding downstream 46894 10743725 ~ 10790914 (+)
slc5a9 slc5a9,LOC107757988 coding downstream 178579 10875410 ~ 10883004 (+)
gclm gclm,LOC107699464,LOC107599012,LOC107657862,LOC107757997,LOC107603255 coding downstream 186704 10883535 ~ 10894051 (+)
dnttip2 LOC102796155 coding downstream 198608 10895439 ~ 10902076 (+)
elavl4 elavl4,LOC107707578,LOC107699497,LOC106613894,LOC107548120,LOC103028496 coding downstream 522720 11219551 ~ 11288918 (+)
G130412 NA non-coding upstream 134011 10546979 ~ 10549067 (+)
G130415 NA non-coding upstream 158379 10519440 ~ 10524699 (+)
G130285 NA non-coding upstream 535944 10085561 ~ 10147134 (+)
G130231 NA non-coding upstream 649513 10033350 ~ 10033565 (+)
G130021 NA non-coding upstream 967210 9715656 ~ 9715868 (+)
G130459 NA non-coding downstream 56969 10753800 ~ 10762869 (+)
G130492 NA non-coding downstream 165573 10862404 ~ 10862638 (+)
G130608 NA non-coding downstream 211523 10908354 ~ 10908717 (+)
G130609 spata6 non-coding downstream 213062 10909893 ~ 10910207 (+)
G130611 NA non-coding downstream 214333 10911164 ~ 10911375 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other upstream 119517 10543919 ~ 10563561 (+)
G130390 NA other upstream 324763 10357946 ~ 10358315 (+)
LOC113532719 LOC108265185 other upstream 1017385 9660815 ~ 9665693 (+)
cebpb LOC108265421 other upstream 1211799 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 2370422 8307164 ~ 8312656 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 9888 10706719 ~ 10741425 (+)
mrpl55 mrpl55 other downstream 173288 10870119 ~ 10874126 (+)
LOC113530800 LOC108266038 other downstream 925471 11622302 ~ 11633844 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other downstream 980680 11677511 ~ 11696791 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other downstream 1008716 11705547 ~ 11714032 (+)

Expression


Co-expression Network