aopep (c5h9orf3,cunh9orf3)


Basic Information

Item Value
gene id aopep
gene name c5h9orf3,cunh9orf3
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13949937 ~ 14022687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU156342
CAATGAGGTTCTGCTCCCAGACGTGAACTGCTACTGCTGTCTGGCTTTCACTGGATACCAGCTACCgcacatctgtctctctctgtctctctttctcactttctttttctcactcacttttGCTTCTCACCTATTCTAACCTCCCTGTCTTCATTATCACTATTCCCTGCCTGTCTTTCCCTTCTCCCTTTCCCTCTGTCAATTTCTGGGTTTTTCTCACTCAcccaccgtgtgtgtgtgtgtgtgtgtgcgggagagagagagagagagcgcgcgaGAGAAGAGCAGTGTACTGGCAGAGCAGACTGTAATAAGGTTAAGTGCAGCTTGCGTGAGAGCttgaaggaaggagagagagaatgtaagaGAGAGACCGGACGACTGGAGGAGTGGATCAGAAAGGAATTGACGCCCCATTTCAAGTTAATGAGGgaatttttccttctctctccctctctgcctctctttctttccactcaacattctcctcctctcttcctctcctccagTGGCTTGGTGAAGCCAGCTCGACGTGGTCACACTCTCCGCCAGTCACACAAGTCACAGAGGAGGTTGTAAAATGGGTGCACCTCAGTGGTGGCACTCGAAAGGGCACCAAGCGGAAGAGAGCGGGGCCCAAGGTGAACTTCAAAGAGTTGAATCCGTGGCAGTTGGTCCTGCTGTTGGAATTCCTGCTAGAAGAGACGGAGCTGAGTGCGTCCTGTCTCAGCCTGCTGCAAGCGACGTACAAACTGCGGAACCAGGATgctgagGTGAAACATCGCTGGTGTGAGCTGGTAGTCAAGCATAAATATGCAGCTGCATATAGAGATGTTGAACACTTCCTCATTCATGACCAGGCTATGGGTGTATATCTGTATGGCGAGCTGATGCTGCAGGAAGACGGACGTCAGCAAGCTTTAGCACGACACTGCCTGTCATCCATCAAAGATGATATGGACCAAACAGCACGCAAGATTGTGGAGGAAATGATCCTCTAATTTAGGAAAGGGGCAGGACCCGATGCAGGCTCTCTTCTTCAGGCTCAGGCTTCCGAGTGTGAAATCAGCTCAGgaaccCAAGTGGATCATTGACAATACTAATGTAAGAGTTCTAGagtgaataatatatatttttaaagtcaGTGCTGTATGTTGTTCTGCTCCACTGGAAGAATTTCACTAGACTACAGCACCCGCAGAAGCAAATACATGGTAACAGTTTGTGTTACAAACATGAAAAGATGACTCAAATTTTCATGCAAAACATATAACTAGAATATCAATGCTGAGGTTACGAGTATTTGGAAACACTGAAAGGTCAGTTTCTAGTATTTAATGCTGCTTGGTCACTTGATGCTATAACTACTGAAATGCTACTGCTATACAGCTTTTATTGTGAAGTTATTTAAGCACCTTGTCAACTAGGCAATGCAATAACTCATATTACAATAGTGCTTCTTTCCATTGTGACTGCCAGTTATGTGATTTCATTGTCaattctgttcattttatattatttatgttttttaaggattttggaaataaaatgaaagatgcTCTACATCAATCAATCACTTTATATGATCATAATCTGATCTTATCTGTATAAGGAAGTATACCGGCCATGTGGAGCAGCAGTGTAGTTCTTATTTAGATTTAGCTTTAGTTTTAGTGCCGTAGAAGACTATAGGAGCAGGCTGGATTTGGTATACTTGGTGGTGTTTTTGAGAAAGACTGGAACAGAGTAAAAGAATAGAGGAAGAGGCTGTGCTGAGACACTGAGGCCAGCTGGGAGACTACTGATGATGGAGGCCTTTGGATTTAGCCACATCCTGGTGCTGGgaggaaataaaacATCATTGCTGTCTCATATCTACACATATGTAAAGACACTGATGACTTGTCACA
>XM_026914857.2
TCCTCCAATTAGACACACAGCCTCCAATTAGACACAAATCCTAGCGCAGGAGGCGGGATGTTATTTTCCGGATTGCGATTAGGGAAAATAACGCCGGTTACTGGGTGATACAGATGGAGTCTAATCAGCAAGATGATTTGGAGCCCAGTAAGGATGACCTGCCTTTGAGAGCTAACACAAATCACATCCTGGTCAGACACTATGTCCTGGACCTCAGTGTCGACTTTCAGCGAGAGGTCATTGGAGGCAGTATTGTCCTGTTCCTAGAGCCATGTAGAGGACCCGACAGGACAGGGGTGTTAGACTTGGTATCCCCATCCCGGAAAGGCGATCTAAACTCTCCGTATGTTCATGATGGTGAAAAAGCCAGAGACTTTGCTACAAATGCACCAGAAATCATGGTATCACAAGGAAGCCAAAATGATGCAAGTAACATGTCATGGGATGATGTGAGCAAAGACTTCACCTTGATTTTAGATTGTTGTGACCTGTCGGTGTCCAAGGTGGAAGAAGTGGATGTATGTACTGTTTCTGAACTCAGGAATCTTCTAGAGGTTGAGCAGGTGGCTCTGGACTCCACTCAGGTTTCATCATTTGGTTTAGTTCAGAGGCTCATCTCTATTCCTTCAGCCAGATGGAGACAGCAGCAGGATCTGTATCTCCAGTGCAGCTGTGCCCGTGCTGTCAGTCAAACTGAGCCTTTACTGTTTCACATGGACCAGTGGAGCCTTCAGATCAGGAAGAAGGTTCAATCCCCTCATGCCTTCCCTCGTGCACTCAGGATCTGGTACAAGACAAAGCCCACAGGAGGCTCTGTGAGGTGGACCAAGGACCAGGATGGTGGGTGCTGTGTTTACACCATGGGATCACCAATCAATAACAGGGCTCTCTTCCCCTGCCAAGAGCCACCTGTTGCAATGTCAACGTGGCGAGCCCATGTGAAAGCCCCGTGTGAATATATGGTTCTGATGAGTGGTGAGAATCAGGCTGTTCCTGTACCCGACGAGACAGGTTTTTTACAATGGGATTATTATGTTACTATGCCAATGCCTGCCTCGACTTTTACTATAGCAGTTGGTAAGTGGCAGGAAGCCAGATCATTGCCTCACAACCATGAAGAAGGGCAAAGTGAGGAGCCTTGTGCAAATTCAGACCGCAGAAACTTTGATTATCCAGGAAGTTGGCCTGAGAACCAAAGCAGTAAAAACCAAAGCTCACATTACAAGGAGGAAGATGAGAAGAAGTTTTGCGCCCATGTAGATTATCCATGTCGTTTCATGCACAAAGCATCTGTTGCCCAGGTAGTCATACCCCACCAGGTTTTTGCCCCATCCTGTCACCTGCACAAGGCTGAATCCACACTCCTGCCTCTTTTGCCCTTCTGTTTGGCTGCTGCTCACTCTGTATTAGGCATCCACCCATTCTCACGCCTGGATGTGCTCATTGTTCCTCCAGGGTTCTCCAGTCTGGGCATGGCCAGCCCGCATATCATCTTCCTGTCCCAGAGTGTGTTAGCGGGTAACAAAATCCTGTGTGGGACAAGGTTGTGCCATGAGATTGCTCACTCCTGGTTTGGTTTAGCCATCGGCGCACGGGACTGGACAGAGGAATGGATCAGCGAGGGGTTTGCTACATACCTAGAAGACGTGTTCTGGGCCAAACTCCAGCAGtcACAAATGGGCAGCACTGAGAATGAGCAGCCGAAGCAACTGAAGGCTCTGCTGCGTTGGAGAAGACTGAAGGATGAGTTAGAGAACTCTGAAGAGGAGCTGCAGGTCCTTAGGCCCAATAAGGACACTACAGGAGAGGTCAGCGAGTCTGGAGCCTCCATCGTGAAGCATGCCCTTAACCCAGGAAAACCATTCATGCAAGTGCACTACCTCAAAGGTTACTTTCTCCTGATGTTCCTGGCTAGTAAAGTGGGCGAGGATGAGTTCTTGAGCTTCTTCAGACTTTTCGTGAGAAGATTTCATGGGCAGCTTATTCTGTCTCAGgacttccttcagatgtttCTGGATACATTCCCAGCTTTGAAAAGTCAAGGCCTCACTCTTGAATCTATTTATTCAGACTGGCTGGATACACCTGGAATTCCGAAGTGGCTTGGTGAAGCCAGCTCGACGTGGTCACACTCTCCGCCAGTCACACAAGTCACAGAGGAGGTTGTAAAATGGGTGCACCTCAGTGGTGGCACTCGAAAGGGCACCAAGCGGAAGAGAGCGGGGCCCAAGGTGAACTTCAAAGAGTTGAATCCGTGGCAGTTGGTCCTGCTGTTGGAATTCCTGCTAGAAGAGACGGAGCTGAGTGCGTCCTGTCTCAGCCTGCTGCAAGCGACGTACAAACTGCGGAACCAGGATgctgagGTGAAACATCGCTGGTGTGAGCTGGTAGTCAAGCATAAATATGCAGCTGCATATAGAGATGTTGAACACTTCCTCATTCATGACCAGGCTATGGGTGTATATCTGTATGGCGAGCTGATGCTGCAGGAAGACGGACGTCAGCAAGCTTTAGCACGACACTGCCTGTCATCCATCAAAGATGATATGGACCAAACAGCACGCAAGATTGTGGAGGAAATGATCCTCTAATTTAGGAAAGGGGCAGGACCCGATGCAGGCTCTCTTCTTCAGGCTCAGGCTTCCGAGTGTGAAATCAGCTCAGGCAAATCCACAGCAGCACACAAGCACTTGACATCACAGCTAATCACCACCTTTCTTTTCaaggaggaaaaaatatatacacaggaCAActaagaaattttttttttttttaggaaccCAAGTGGATCATTGACAATACTAATGTAAGAGTTCTAGagtgaataatatatatttttaaagtcaGTGCTGTATGTTGTTCTGCTCCACTGGAAGAATTTCACTAGACTACAGCACCCGCAGAAGCAAATACATGGTAACAGTTTGTGTTACAAACATGAAAAGATGACTCAAATTTTCATGCAAAACATATAACTAGAATATCAATGCTGAGGTTACGAGTATTTGGAAACACTGAAAGGTCAGTTTCTAGTATTTAATGCTGCTTGGTCACTTGATGCTATAACTACTGAAATGCTACTGCTATACAGCTTTTATTGTGAAGTTATTTAAGCACCTTGTCAACTAGGCAATGCAATAACTCATATTACAATAGTGCTTCTTTCCATTGTGACTGCCAGTTATGTGATTTCATTGTCaattctgttcattttatattatttatgttttttaaggattttggaaataaaatgaaagatgcTCTACATCAATCAATCACTTTATATGATCATAATCTGATCTTATCTGTATAAGGAAGTATACCGGCCATGTGGAGCAGCAGTGTAGTTCTTATTTAGATTTAGCTTTAGTTTTAGTGCCGTAGAAGACTATAGGAGCAGGCTGGATTTGGTATACTTGGTGGTGTTTTTGAGAAAGACTGGAACAGAGTAAAAGAATAGAGGAAGAGGCTGTGCTGAGACACTGAGGCCAGCTGGGAGACTACTGATGATGGAGGCCTTTGGATTTAGCCACATCCTGGTGCTGGgaggaaataaaacatcatTGCTGTCTCATATAAAACATCATTGCTGTCTCATATCTACACATATGTAAAGACACTGATGACTTGTCACAcatttgtgtttctgtattttattaaaaaaaaaaaaaaa

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0044238 primary metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process

KEGG:

id description
K09606 C9ORF3; aminopeptidase O

RNA

RNA id representative length rna type GC content exon number start site end site
TU156342 False 1910 lncRNA 0.44 10 13987733 14022649
XM_026914857.2 True 3673 mRNA 0.46 19 13949937 14022687

Neighbor

gene id symbol gene type direction distance location
lrif1 lrif1 coding upstream 64270 13879111 ~ 13885667 (+)
apex2 apex2 coding upstream 71977 13873546 ~ 13877960 (+)
csde1 csde1 coding upstream 81817 13838338 ~ 13868120 (+)
porcnl LOC108265978,LOC108437582,LOC107549961,LOC107668005,LOC107731263 coding upstream 116640 13823098 ~ 13833297 (+)
magixa LOC108265805,LOC108437579 coding upstream 261008 13616604 ~ 13688929 (+)
ercc6l2 ercc6l2,LOC107689281 coding downstream 132171 14154858 ~ 14171793 (+)
slc20a2 slc20a2,LOC107724891,LOC107602837,LOC107594502,LOC107711867,LOC107669617 coding downstream 177016 14199703 ~ 14232129 (+)
mpeg1.1 LOC108265423,LOC108437597,LOC108437601,LOC108257561 coding downstream 243938 14266625 ~ 14269429 (+)
prf1.5 LOC108265013 coding downstream 250301 14272988 ~ 14279281 (+)
ap3s1 ap3s1 coding downstream 898456 14921143 ~ 14937444 (+)
G132138 pdzd4,LOC108437581 non-coding upstream 150321 13794582 ~ 13799616 (+)
G132136 NA non-coding upstream 155632 13793156 ~ 13794305 (+)
G132139 NA non-coding upstream 157228 13791862 ~ 13792709 (+)
G132115 NA non-coding upstream 378965 13570392 ~ 13570972 (+)
G132081 NA non-coding upstream 449254 13500389 ~ 13500683 (+)
G132391 NA non-coding downstream 62965 14085652 ~ 14087881 (+)
G132361 NA non-coding downstream 94288 14116975 ~ 14120415 (+)
G132405 LOC108265425 non-coding downstream 210341 14233028 ~ 14234254 (+)
G132420 mapk4,LOC108265425,LOC107679920 non-coding downstream 222889 14245576 ~ 14246134 (+)
G132424 NA non-coding downstream 226435 14249122 ~ 14249815 (+)
dock8 dock8 other upstream 1129 13890404 ~ 13948808 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 158620 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 1345232 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 1719936 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1954085 11979186 ~ 11995852 (+)
G132595 atoh1 other downstream 299485 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 917614 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other downstream 957146 14979833 ~ 14979904 (+)
srp19 srp19 other downstream 1356255 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 1979374 16002061 ~ 16018818 (+)

Expression


Co-expression Network