amigo1 (amigo1)


Basic Information

Item Value
gene id amigo1
gene name amigo1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12390255 ~ 12396660 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929291.2
AGGATTAAATGGCGTATCAGGAGGATTCGGAAAGGACTGCATAGCTTCAGGAGAAGATAGACGTCTGAGCAGGTTATGTGAATGAAATCCGGGCTGCAACCGGAGCGTTTTTATGCATGTGAGAAAGGCTGAGCGAAAGCGCGCGACTGCTCATGCGCCCCGGCAAGTGAGTGCGCGTGAAGAGATGCTGCTCATCAGATAGTCAGTGTGGCGTCTGATCAGGGGTCGAGCACAGCTCATTTCTTCTCCTGTCACACACTGCATCTGCGAGCCTCATGGATCTTCGGACGCTTTGGCTAAATTGACATCTGAAATGGATTTATTCACATTTGCCATAATATGTCTCGCGGATTATAAGACCGGCGCTGAGCGCGTCCTTTCTTTACGTAATGTCGTAACTATTTGCGCATTTATCCTTGGCCGAGTTCAACtgcgataaaaaaaaaaaaaaagatctcgtGCTCGAAACGTTGTCGGGGCAAATTGGTTTTGTCTCCTGGACGAACACACCGTTTTTCTCTCGGTGTATCTCCATCTGGCTTTTGTTTCTGAATGGGAAAAGCATGGCACGTTACTGTGATGGGCAATGGATAAACAAACCCCAGCTCTGGGCATTATTTACATACAATCCTTGATGTATCGTAACCCGAGGCGGAACGTTCTGGAGctTATACTCTGCAGCTCCATCAGCTCACTCAGCTGATCTCTTCATTGCGTGTAAAGAAGTCGAGTACAGCTTATATCATCGTAAAACTAGATTTGACTCTTGAGAGAGTGGAAGATATGCCATCCTCCATGGAACTGTTCATTAAGTGGGCTGTCTGCACTTCCCTGGTTCTTATCCATATACCAGGGACCGACAGCTCAATAGTGAATTTCCACAAAACATGCATATGTGCCAGTAACATTGTGAGCTGCTCCAAAATGAACTTAACTACTGTTCCATCTGACCTGCCCAAGTACACAGCAGTGCTTGATCTGAGCTATAATGACATCACCAGACTACGTGCAGAGTGGACCACATACAAGCTCCCCAAACTCCACAACCTTTTACTGAGCCACAATGGCTTGCATTTTATCTCTACTGAAGCTTTTGATTATGTTAAGCACTTGCGCTACTTGGACCTGTCCTCTAACAGCATCCGCCAACTGGATGAGTACATTTTTGAACAGCTAGAGTATCTAGAGGTGCTCCTGCTCTACAACAACCACATCTCCCAGATTGACCGCACTGCCTTCACAGGCCTCAGCAAACTGCAGAAGCTCTATCTGAGCCAGAACCAGGTGGCCCGCTTCCCTCTGGAGCTGGTTAAGGACAAGACGCGACTGGAAAAGCTGAGCTTATTGGACTTGTCTTCCAATCGGATCAAAGTCCTCCCTATTCAAGACCTGCAGGACCTGCCAGCCTGGCTCAAGAATGGACTTTACTTCCACAATAATACGCTCATCTGTGACTGTGAGCTGTACAGCTTGATGGCACATTGGTATATGCGACGACTAAACTCAGCTGTGGATTTCAAAGATGACTACACCTGCATACTGCCAGGGCCTGATAAGAAAATCTTGCATGTTTTTGAGCTAAACGTGCATATGAACTGCAGCACATATAATGAATCAGTGGAGGAAGCCTTTTTGGAGCAGTCTCTGGTCCTCAAGTGTGATACACGGCATCGGGACATGTCCAAGACTTGGATGTTACCTGGCAATGTAGTAGTATCACCTGGAAACAACCAGACTGCTTTAGTTCTGCCAGACGGCAGCCTGGAGATCAGTTCAGTAAAACTCGAGGACTCTGGTCAGTACACCTGCTTTGCTGTAAGCGAATACCTTAATGAAACCCTGTATGTGTGGGTGAAGGTACATAACTTCACTCTTAATGGAAACAGCGAGACCCTCAATACAGCATACACAACTCTGGTGGGATGCTTGGTCAGTGTGGTCCTGGTGCTCATCTACCTGTACTTGACCCCTTGCCGGTGCTTCTGCTGTCCAGGACAAGGGAAGTCCAAGAACAATCACGAGGATAGTATTCATTCGTCTATGCTCAGTGCCACCCCAACTCACGAGGATCTGGCAACCAAAGCAGAGCCCAACAGGCATGTTGCCTTCATAGATCCCAAGGACCTGCAGGGCCAGAATGGGAAAGTGAATCGCAATGGGGAAGAGGAGCTGGAGGATGAGGCTAAACATgggaaaggaaagagaaagaaatcagtGGCAGACTCTATTAGCTCAGTCTTCTCTGACACACCCATTGTGGTCTGAATGGATCCTGTCCAGAGTTGAAACTGGGCTGCCTACTGTGATGGATGCAAATTGTGTGAGGTTTGTCCAGAGGCAATGAGTTGTTGAGACATCTTTGGAAAAAGAGCAGCAGAAATGCAGTTTGCACCCTTCAGCATGTGGCTAATTAAAGACACAGTGTTATATAGctttcctttgtgaatttgacAAGGACAAGTTAGAGAAGCCTTTCCAGCATTTTAATCTGTAGCACTTAAGTATATACTGTGAAAAGGTCTTGCCATATATAGTAAGTAGTAGTAACGTGTCACTGAGAAGTGGGGAAGGTCATAGGGAACATGGCAAAAATAATTTCTCCATGAACAGGCACTGGCAAGCCttaatatttagtaatatataAACCATATAAACCATATAATATGATTCTTAGACTGCTGAGAGTAGAAAGATTATAGCTTTGTGTCCTGTAGCCATTAATACTTACAATATTTATTCCTCCCTTCCCCAAATGCTAACGTGCCAGCAACACCACTTTATATATAGACTTCAGTCATGAGTCATTGCTAGAGGAGTGGCATGCCATTAACCACCATTACGGTGAATGCTGAACACTGTCAAGTGCAGTTGAAAGGACGTAGCAAAGATTTGAATGTGCTTGTAGAAATTCAGCACCTCTAAGCTTATCAATACGTCAAACCGTAGAGGAAACCTGGGTCAGTTTTAATAGCAAAGTAAAATTGGAAAAGAGAAAATCCAATTGTTGCATTACCATTACATTTAtattggttgttgttgttgttaataaggAATAAGCTGTAAAGTGAATAGGTGACATTAAGCCAAAGTTCAACTTGCATTGCAATTCCATAGACACTTGCAATAATACCACAAGACTACAGCTGTTGCTGAATTTTAGAACAAAACATGCTGGATTTTAGGACAAAATGCTAAAACTTGTTTTGGATAGATGTCGTCTTCTAGCATCCTGTCAAGTTTGGTTATTGAAAGTTTGGGTAGTTGTAGCACCAAAAATTAGAACTGACATGCCGGCTGCCATGATCCCCAAGGATCACTGAAAATTAATGCCAGATGCACAATAGCATTTCTTGTAATCCCCAGCTTAAGAGTAAATTAAATCAGCATGTTGTGTGCACAGCAAATGTATACCTTAAACAATGGCTCGTAATCACATTATGGCTGCCATTCTCTGTCAGAAAATATGGCCTATTATTTGCACAATGCCATTTGCATGAGGCTGTCTGTCATGACaaccagagagacagagacatttCCTGAATGCTAATAACCTCTTAAAATAGAATAAGGCATCTCTCTGCTTTCCCCAATAAACCAGGACAGTCCATAATGCAAAAACCAAAACTGTTTTTCAAACATCTCTGATTCTCAAACCTTCTCAAGTTCAGGGTTATTTGCATCTTTTGCTAGCTTTAGTCATTGCTGAGTCACCCATTGTCAAAATGTTTTCTAAACGATTGGGCCCATCTTTAATTATAACCCAAGTCCCCAAAAGATGCTTGTAATCTTGATCAGAAAAAAGGACAGAGCACTGGGTTTATTTTTTGGCAAAAGAGTCTAATCTGACATATTCATTATGCATgtcactatccagtgtcacatAGGCTTTAATGAATGTGATAAACACATTGGAAGAGTTCCTCAGATATAGCacacaaaatgaacatttcagaaTGTTGGTTCAACGTGTATTTCCACACAACATGCATTCTATGTAGCATTTAGCTGTCATACCATGTAACTCTATCCCGACACCATAATAGTTTCAATACTCTGGCTTCACGTTTGCCTAGAGTGAAATAAGACAGTGATTTGACAGCCATATCATTCTTGGTTTCACCCCACTTGGGTGAAGTCAAAGGCAGGCTAATTCAAAACACACTGATTCTCAATGGTAAAATTATATGGAGGACACTAGCAATGGAAGTATTTTAGAGCATTCCAGTTACAATCTGTGTAATAAGGGACTAAAACCTCTAAGATTCTGTTTTCTGAAAGAGGGGAGAGCCCATCTGGTTTGCACAGCATCATCTCAGGAAAAAAGTATTGGAAAATGAGAGCAGCTATGATGGACAGCGGCAGGCAGTGGGCAGTTCAGGCCTAATACACGCCTCCTCAGCTGAAGCCAAAATCCTGTGACGTCCTCACCATCATGATCTCTATGGGAAGAGGCCAGTGTCTCTGTTGCTTTCAAACATGCTTCACCTAGGCAAGAGACACAACACCCAAACAAGTTCTAATGGCTTTTCAGCCATTGTCATCTGTTTTCCTTGAGTATCAGTCCTTGGATATTGTTAGATGGCGGCAgtattttattaatctgttcATCATTCAGCATTTTATGGGCAGTACatctgtgcttttgtgtgttgCTTCAGTGTTTGTTTACAACGTTTACCTTGAAGACAGTGTTTTCTTAACCAGCAAGTCATTTTGTCTGATTTCCTTGTTCTTCTATCAGAAGTGCCCAAGTCACTCCTGTAGTTTAACACTGCTGGCTCTAATGCTGACATGTATTAGGTGTATCAATTTAGTACAACTGGCTCTGATATGCAGATGGTCTTGAAGAGCCTGTTTAGGTCGATCATGTGGGCTAAAGCTGAAAATAACCTGTGGGAAAGTAGATCACAGGGAGCATACTGGGCCTCATTCTTCTTTATATAGTGTTCTTTAAGCTGTTGTCTGGATTCCACTTGTGACAAAAGATGTTGAGCATTTTATAATGTTATCTGTTGTAATTTATGTTTCTGTCATATGAAATCTTGAAGATATGTTTACAATGTGTCTCAATAGGTCTGTATATTAAATTAAGAAGTTAGTTAATAGACCAGAAACTTCAGTAAGCCATCACAGACTGTACCTATGGAGGCAACAAAGCACTGTATCAGTAAGCAGTAGGTTATATGCTCTTTTTCAGGAATACACTGTTATATGTAGAGACGTTTGTGACACAAAACCCAGAGAACTGCCTTGACTTTACATTATGCGCCTCTAATACCTTTCGTTAggataatgtataatgtaagcACACTAAATTGTGTATCAGTGTACCTATTTCTTACCTAGCCACTTTACTCCTGTTTGTGAATATGGCCTgttcattttgtccttttttaagTGCCATACACtgtatgtaacatgtatgtaCTATTTCACAACTCTGTATGTCAAGTATTTTATCTCATTTAATTTTGAATCTCTGGCTACTAGAGACTATTAATATAAAGTGgctgtgtctgtctgttgtCTACAGTTGGATATACAAAGACTTTTAGTATATAACAAATACACTGACCATGTCACAATCATTTCAACAAAAGTGCTTGTCTTTAGTTTTTGTGAAATGAAAACAACAAGACAAATACATCCAGCTACCGGAAATCACATTAGTGCAAAGTGAATGTCTTGAAGGTAGTAATAGCCTCACAGTGGAAACATGGCCCATGTCTCAGTAAGCACATTATGAGTGCAATATCCATTAGATGCTGCATAGTGCTGGTCCTGTATTAGAGATAGAGAGGTTCTGCTGTATCGAGTCTCCATGGTAGACTGCAGACTGTGACTGACTGTAGGGTAAAGCTTAAGCCAGAgctgtagaggttttattatAGACAATTACTATGATGGTAAAATTATTTGCAAAActaatcataataaaaaaaaggttacagCTTCA

Function

symbol description
amigo1 Acts upstream of or within brain development. Predicted to be integral component of plasma membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region and nervous system. Orthologous to human AMIGO1 (adhesion molecule with Ig like domain 1).

NR:

description
PREDICTED: amphoterin-induced protein 1-like

GO:

id name namespace
GO:0007420 brain development biological_process

KEGG:

id description
K22529 AMIGO; amphoterin-induced protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929291.2 True 5956 mRNA 0.42 2 12390255 12396660

Neighbor

gene id symbol gene type direction distance location
trnad-guc_1 NA coding upstream 8185 12381999 ~ 12382070 (+)
gnat2 gnat2,LOC108265815,LOC108442114,LOC102236489,LOC108236782,LOC107390790,LOC107591823,LOC103467179,LOC107679180,LOC106946560,LOC107731158,LOC107668040,LOC107550493 coding upstream 67379 12314904 ~ 12322876 (+)
eps8l3b LOC108265744 coding upstream 116191 12257576 ~ 12274064 (+)
atp5pb atp5f1,LOC107668113,LOC107679218,LOC107711984,LOC107731279 coding upstream 132996 12249509 ~ 12257259 (+)
prex1 prex1,LOC107731191,LOC107591805,LOC107679267,LOC107550458 coding upstream 202626 12103220 ~ 12187629 (+)
sort1b LOC108265432,LOC108442120 coding downstream 17534 12414194 ~ 12433146 (+)
nfyal nfyal,nfya,LOC108265435,LOC107668092 coding downstream 41452 12438112 ~ 12447984 (+)
ahcyl1 ahcyl1,LOC107679038,LOC107591817,LOC107668032 coding downstream 53615 12450275 ~ 12475750 (+)
kcnc4 kcnc4,LOC107731196 coding downstream 81958 12478618 ~ 12509666 (+)
alx3 alx3 coding downstream 190139 12586799 ~ 12597439 (+)
G131282 NA non-coding upstream 163893 12226152 ~ 12226362 (+)
G131279 NA non-coding upstream 173041 12217004 ~ 12217214 (+)
G131061 NA non-coding upstream 672370 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 838224 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 1030875 11355449 ~ 11359380 (+)
LOC117597859 NA non-coding downstream 123234 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 293507 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 304052 12700712 ~ 12701501 (+)
G131605 NA non-coding downstream 315965 12712625 ~ 12729522 (+)
LOC117597782 NA non-coding downstream 412463 12809123 ~ 12809738 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 160254 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 394403 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 676223 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 693464 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 756411 11622302 ~ 11633844 (+)
rbm15 rbm15,LOC107731203 other downstream 203038 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1308506 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1493744 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1553277 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1925512 14322172 ~ 14323450 (+)

Expression


Co-expression Network