bmi1b (LOC108280883,LOC103034194,LOC108444227,LOC107689401,LOC107585379)


Basic Information

Item Value
gene id bmi1b
gene name LOC108280883,LOC103034194,LOC108444227,LOC107689401,LOC107585379
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2975646 ~ 2985302 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940823.2
aaaaaaaggacTGGTGAGCGACTCTCGCGAAGCAGAGCAGGTGCGCGAGCCTCATGACGATGCACCGAACCACGCGGATAAAGATCACGGAGCTGAACCCGCATCTGATGTGCGTGTTATGCGGCGGCTACTTTATCGACGCCACTACCATCGTTGAGTGTCTTCATTCGTtctGTAAAATGTGCATCGTGCGGTATTTAGAGACCAGTAAATACTGTCCCATATGTGACGTACAAGTTCACAAAACCAAACCACTTCTCAATATCAGGTCGGATAAAACCCTTCAGGACATTGTGTACAAGCTGGTGCCTGGTCTGTTCAAAAATGAAATGAAACGAAGAAGAGATTTTTATGCAGCACATCCATCCGTTGATGCCGCTAAAGGATCGAATGAGGATCGGGGAGAAGTGGCTGACGAGGACAAGAGAATCATTGCTGATGATGAGATCATTAGTCTCTCGATTGAGTTTTTTGATCAGAACAGATTTGGAAGTGGTGATGGGGAAGACAAAGAACCCACAAAAGAGTCGAATGTAAAGCGATATTTGCAATGCCCGGCTGCTATGACAGTGATGCATCTCAGAAAATTTCTCCGAAGTAAAATGGATATTCCATGTAACTTCCAGATTGAGGTCATGTATGAAGACGAGCCTCTGAAGGATTATTACACATTAATGGACATTGCCTATATCTACACCTGGAGGCGGAATGGTCCACTGCCTCTGAAGTACAGGGTTCGTCCTGGCTGTAAGAAGCTAAAGCTAAGCAGTGCACCAAGCTGTGAGACAGCAGGTCAAAAACCTGAAACGGAAAGTGACTCGGGAAGCGAAAAGCTCAGCAGCCCAGTCCTTCATGCTCCTACACCTTCCACATCCTCCTCTCTGCCTAGCCAGAGCGCTCCGGTCAAATCCTCACACTCAAgcttctctcatctctcaccAGTCAACGGAGTGTCCAACAAAGCCGGCCCCAATGGCCAAGTCTCATTCAGCAACAAAGCCAGCAAGGGCTCAGTCAATGGCTCCAACTCTCTGGGGTGACAAAAGGACTAATGGACACGAAAAGCCATCAAACGAAGAGCTGCAAACTCGGATGCGAAGTTTGTAGGAACTTTAGTGAGGGACAGTGATCTTGTTGGATTTCGGGAGAAAAGCTACGACTGCTAACTCTGTCCCTTACGAGTTAGCACATGCAACTTTTTATGACTTTTTGCAATCGGGAGCTGTTTTCGAAAGGCAGTTTCTCTACCGAACCACCTTTTCCTTTTGTATTATGTATGTTTAAGTATGTATGTTAAGTATGACTTCTTATGTTTCTGTTAATTACTAAGATTTCATTGGTTGAATAAAGATCATGAAGTATATTTTGTGCATGAAGAACCCAGGATGAACGCCAGGAATCTTCTATTGTATAAACTCCAAATCATTCACGTAGGTTAGGGCATCAGTGTGtagaaattgatttttttttctttaaacaggaAGCAACCTTAAATGAGACATGCACAGTTGGTCATAAAGATGATTGATTGTTAGAAAAGCTACTAAGGGCTTTTAAGTTCTCCTCATATTTTAGTTAAGCGTTAAGCTCTGTACTTTtcaaaaagaaacataaaaaaatgaaggatCAACTAGCAACTTTTGGAAGTTCTTGCTGAAATGAATCGAAATTAGAGTTCCTTAGGAGCTGTTCATGCTTCTGAAAGATCTTCAGATGGTTCTGCTGGTGAGGAAACCTAAAGAAACTCGAAGATCTTTCAGGAATCATGATGAAGTACGACCTGTGAATAGTCGCTTCCTTTATTCTCACATCAGTGGACATTAGAAATGAccagattagatttatttctcATGCCTTAGcatatttcagtgtattttttgtCTAAGAGGACATTTCTCTTAATGTCTTTTGTGCTCCAGAAATGTCTAACTTTCTTGACAATTATTTTTGGCCGACACTTTCAGGCCTGTGTATCGTTTTCTGTTGTACAATATAAAACCTGTATCTGAATAAACATTTTACGTTTTTATTACTCAAA

Function

NR:

description
PREDICTED: polycomb complex protein BMI-1-B

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031519 PcG protein complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11459 PCGF4, BMI1; polycomb group RING finger protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940823.2 True 2038 mRNA 0.42 10 2975646 2985302

Neighbor

gene id symbol gene type direction distance location
klhl40a LOC108280764,LOC108435482,LOC103032700 coding upstream 96931 2872529 ~ 2878715 (+)
hhatla hhatl,LOC108435490,LOC103033016,LOC107688529,LOC107722653,LOC107689424 coding upstream 104390 2860285 ~ 2871256 (+)
plcd1b LOC108280636 coding upstream 140714 2808427 ~ 2834932 (+)
ralab rala,ralaa,LOC107565693,LOC103042957 coding upstream 247578 2718759 ~ 2728068 (+)
c21h7orf25 c20h7orf25,cunh7orf25,zgc:55781 coding upstream 257948 2714439 ~ 2717698 (+)
nebl nebl,LOC107722518,LOC107718172,LOC107688530 coding downstream 29184 3014486 ~ 3019463 (+)
nrn1b LOC108280273 coding downstream 94714 3080016 ~ 3082751 (+)
sall3a sall3,LOC108435487 coding downstream 313042 3298344 ~ 3317951 (+)
atg5 atg5,LOC107697282 coding downstream 516765 3502067 ~ 3523213 (+)
trnas-aga_13 NA coding downstream 640114 3625416 ~ 3625497 (+)
LOC113543325 NA non-coding upstream 30439 2942487 ~ 2945207 (+)
G313494 NA non-coding upstream 186150 2789242 ~ 2789496 (+)
LOC117599939 NA non-coding upstream 239058 2731215 ~ 2736588 (+)
G313465 NA non-coding upstream 240262 2735119 ~ 2735384 (+)
G313443 NA non-coding upstream 301000 2674433 ~ 2674646 (+)
G313607 NA non-coding downstream 90747 3076049 ~ 3076370 (+)
G313796 NA non-coding downstream 313796 3299098 ~ 3299306 (+)
G313853 NA non-coding downstream 539007 3524309 ~ 3524518 (+)
G313949 NA non-coding downstream 787768 3773070 ~ 3819909 (+)
G313975 NA non-coding downstream 821846 3807148 ~ 3808690 (+)
trnat-agu_12 NA other upstream 86258 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 299798 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 313247 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 789969 2181979 ~ 2185677 (+)
tgs1 tgs1 other upstream 830409 2133150 ~ 2145237 (+)
LOC113543208 LOC108280571,LOC108435486 other downstream 438265 3423567 ~ 3489367 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 1607138 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 1802546 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 1916168 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 2102537 5087839 ~ 5091273 (+)

Expression


Co-expression Network