trnat-agu_13


Basic Information

Item Value
gene id trnat-agu_13
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5219545 ~ 5219618 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnat-agu_13
GGCGCTGTGGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCctgggttcgaatcccagcaGTGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-agu_13 True 74 tRNA 0.54 1 5219545 5219618

Neighbor

gene id symbol gene type direction distance location
LOC113543161 arl14 coding upstream 21611 5196649 ~ 5197934 (+)
ppm1lb ppm1l,LOC107722109,LOC107681725 coding upstream 28146 5121697 ~ 5191399 (+)
LOC113543113 NA coding upstream 146406 5070618 ~ 5073139 (+)
rabgef1l LOC108280803 coding upstream 149112 5060030 ~ 5070433 (+)
LOC113543019 zadh2 coding upstream 183100 5032249 ~ 5036445 (+)
trim59 trim59 coding downstream 2915 5222533 ~ 5226707 (+)
ift80 ift80 coding downstream 29850 5249468 ~ 5322606 (+)
lxn LOC108280775 coding downstream 496688 5716306 ~ 5723799 (+)
LOC113543227 crgm2,LOC108280851,LOC108260581,LOC108260578,LOC108260584,LOC108280748,LOC108260582,LOC108260664,LOC108260580,LOC108280755 coding downstream 562675 5782293 ~ 5783234 (+)
dock10 dock10 coding downstream 775871 5995489 ~ 6096462 (+)
G314785 NA non-coding upstream 96143 5122698 ~ 5123402 (+)
G314675 NA non-coding upstream 240579 4978021 ~ 4978966 (+)
LOC117599956 NA non-coding upstream 326267 4884210 ~ 4893278 (+)
G314636 NA non-coding upstream 372828 4846192 ~ 4846717 (+)
G314628 NA non-coding upstream 418442 4800652 ~ 4801103 (+)
G314800 NA non-coding downstream 1028 5220646 ~ 5221823 (+)
G314807 NA non-coding downstream 103706 5323324 ~ 5323675 (+)
LOC117599958 NA non-coding downstream 154812 5374430 ~ 5383232 (+)
G314833 NA non-coding downstream 155125 5374743 ~ 5374957 (+)
G314826 NA non-coding downstream 175694 5395312 ~ 5396474 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other upstream 2954 5201021 ~ 5216591 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other upstream 128272 5087839 ~ 5091273 (+)
LOC113543089 mbp other upstream 261424 4901470 ~ 4958121 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other upstream 429710 4787848 ~ 4789835 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other upstream 457450 4592440 ~ 4762095 (+)
si:dkeyp-97b10.3 LOC108280535 other downstream 121391 5341009 ~ 5370897 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other downstream 674886 5894504 ~ 5901566 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other downstream 1007099 6226717 ~ 6227240 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other downstream 1717722 6937340 ~ 6944990 (+)
G316001 NA other downstream 1913841 7133459 ~ 7135501 (+)

Expression


Co-expression Network