AMCG00001451 (rcor3,LOC106585063,LOC106564802)


Basic Information

Item Value
gene id AMCG00001451
gene name rcor3,LOC106585063,LOC106564802
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4489453 ~ 4495851 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001451
gcAAGCGCCCCACCGTGTTAAAATGAAGCGAAACCAATAAACCGCGGGTATGCATACAAGGCCAGCCCTTTAAGGATAATAACAAATGTCGGTGGATGAATACATGACATTTGCACAGTGACACTGCTGCGCAGAAAGGggagttgttttgaaaaaaaaaaaaaaaagaaaaaaaaaagaaagaaaaaaggcaagcCCGGCTACTGTAGTACGTTGTAtgctgtttaattttaatttattaaaaaataaaggccAATACATATTTAGCAATGCCCGGGATGATGGAGAAGGGGTCGGAGTACCTGGGGAAGGGCCGGTCGAATGGCACGAAAAGCCCTTCCAACGCCTCGAATGGACATTTTTCAGACGAGAGCGGCAGCGACGACGAACACGATGTGGGAATGCGAGTGGGATCGGAGTACCAAGCGAGCATACCCGAATTTGATCCCGgtgCTACAAAGTACACGGACAAAGATAGTGGGGGCATGCTGGTGTGGTCTCCATACCATATGATAGCAGATCCTAAATTGGATGAATACATTGCAATTGCAAAAGAAAAGCATGGCTACAATGTGGAGCAGGCTCTGGGCATGCTGTTCTGGCACAAGCACAACATTGAGAAGTCACTTGCTGATCTCCCAAACTTCACTCCCTTCCCTGACGAGTGGACTGTGGAAGACAAAGTGCTGTTTGAGCAAGCGTTCAGCTTTCATGGGAAAAGCTTCCACAGGATACAACAAATGCTACCAGATAAGTCCATTTCGAGTTTGGTAAAGTACTACTATTCCTGGAAAAAAACCCGCTCCCGGACAAGTTTAATGGATCGCCAAGCCAGAAAGTTGGCAAACCGAAATAATCAAGACGAAAGTGATGAAGAGATGGAAGAAGCCAATCCCAATGAAGCCAACGACAGCGATTATGATCCCactaaggaaacaaaaaaagagACTCAACCTGAACAGCCTGCCCAGACCAGTAAGATTGGGTTGGGACGCCGGGAACACCAGAACCTGCAACACAGACACCACTCCCAGCGGTCCAAGTGCCGGCCCCCCAAAGGCATGTTCTTGACTCAGGAGGATGTGGTGGCCATTTCCTGTAGCCCCAGCGCTGCAAACACTATACTTAGACAACTGGACATGGAGCTGGTGTCTTTAAAACGACAGgttcaaaatgcaaaacaagttAACAGTGGTATGAAACAGAAGCTGGAAGCAGGTATAGATGACTTCAGACTTCCAGAGTGCAACCAGAAAGTAAACGCCCGCTGGACTACAGATGAACAGCTTCTTGCAGTTCAAGGTGTCCGGAAGTATGGGAAAGACTTCCAAGCTATTGCCGACGTTATCGGTAATAAGACCGTAGGTCAGGTAAAAAACTTCTTTGTGAACTACCGTCGCCGCTTTAACTTGGAGGAGGTGCTCCAGGAGTGGGAGGCAGAACAGGGAACTCGGGCGCCCAACGGTGACACCACTACCTcaggggaggaggggaagagCAGTGCCAACACCCCGTCAGGGAAGAGTACGgacgaagaggaggaggaggtgGCCAGCCCAGCCTCCGGCCCGTCTCCTGCAGCCCAGGCGTCCTCCGCCCAGACGCCGGCGCCGGCCACGGCCTCCCTGAACCAGCCTCCCCCGCTCCTCCGGCCCTCGCTGCCTGCCACGCCCGCCCTGCACCGGCAGCCTCCGCCGCTGCAGCAGCAGGCCCGCTTCCTGCAGCCCCGGCCCACCCTCCATCAGCCCCCGCCGCTCATCCGGCCCACCAACCCCATGCCCCCGCGCCTCAACCCCAGGCCAGCCGTCACCACTGTGAGCGGGCAGCAGCCCCCGACGCTGATCGGGATCCAGGCCGAGACGCCGTCTTCCTCTCTTCACTGA

Function

symbol description
rcor3 Predicted to enable transcription corepressor activity. Predicted to be involved in histone deacetylation; negative regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex and transcription regulator complex. Orthologous to human RCOR3 (REST corepressor 3).

NR:

description
PREDICTED: REST corepressor 3-like isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001451 True 1883 mRNA 0.53 12 4489453 4495851

Neighbor

gene id symbol gene type direction distance location
AMCG00001445 NA coding upstream 173504 4313938 ~ 4315949 (+)
AMCG00001448 NA coding upstream 208111 4259020 ~ 4281342 (+)
AMCG00001447 LOC104944420 coding upstream 247276 4230602 ~ 4242177 (+)
AMCG00001446 NA coding upstream 285229 4178301 ~ 4204224 (+)
AMCG00001434 NA coding upstream 322900 4162673 ~ 4166553 (+)
AMCG00001450 NA coding downstream 4498 4500349 ~ 4510856 (+)
AMCG00001453 NA coding downstream 16333 4512184 ~ 4517913 (+)
AMCG00001452 NA coding downstream 22453 4518304 ~ 4519128 (+)
AMCG00001463 NA coding downstream 274766 4770617 ~ 4779786 (+)
AMCG00001461 NA coding downstream 306321 4802172 ~ 4866884 (+)
G157834 NA non-coding upstream 421826 4067088 ~ 4067627 (+)
G157783 NA non-coding upstream 572380 3881842 ~ 3917073 (+)
G157668 NA non-coding upstream 996284 3489063 ~ 3493169 (+)
G157640 NA non-coding upstream 1051790 3436345 ~ 3437663 (+)
G157635 NA non-coding upstream 1083051 3405148 ~ 3406402 (+)
G157966 NA non-coding downstream 200703 4696554 ~ 4702861 (+)
G157975 NA non-coding downstream 218044 4713895 ~ 4714160 (+)
G157985 NA non-coding downstream 376844 4872695 ~ 4875144 (+)
G158014 NA non-coding downstream 392263 4888114 ~ 4888352 (+)
G158089 NA non-coding downstream 817217 5313068 ~ 5315236 (+)
AMCG00001430 srf other upstream 427120 4045356 ~ 4062333 (+)
AMCG00001433 NA other upstream 465543 4022797 ~ 4023910 (+)
G157781 NA other upstream 608674 3875209 ~ 3880779 (+)
AMCG00001436 gng4 other upstream 724091 3748554 ~ 3765362 (+)
G157369 NA other upstream 2488525 1971881 ~ 2000928 (+)
AMCG00001457 NA other downstream 127616 4623467 ~ 4652000 (+)
AMCG00001480 NA other downstream 870154 5366005 ~ 5383064 (+)
AMCG00001486 NA other downstream 1097829 5593680 ~ 5633349 (+)
AMCG00001489 NA other downstream 1374124 5869975 ~ 5871430 (+)
AMCG00001493 NA other downstream 1393985 5889836 ~ 5900998 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000015_03799605_03810223 RCOR3 coding CI01000015 null 3799528 ~ 3810735 (-)