G144805 (LOC107679324,LOC107728925)


Basic Information

Item Value
gene id G144805
gene name LOC107679324,LOC107728925
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12196272 ~ 12196773 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU182112
CTGGAGGCaaaatgggggaaaaacaaatgcaagaatAACTTATTTTACCGTGGACTTGATTGATTTCCGAATTGGACGACAGGATCTCATCGGCCAGTTTCTGTGCAGTGGGAAGAACCTCTGTGTGATGTGCCGTgattaaatactgtacaaatTTCTGTAGCTGGTCCCTGTTCATTTGGAAAAGGGTCTCTGAGATGGGAAGACGCAGTTTGACCAGGTCCGGCTTGCGGATCCGGTAGAGAGAGAGTGCCACCACATGTGCGCAGTAGAAAATGTCCTTGTTCCCACAGCCACATGTGACCGAAGTGATTTTGCAGCGGTCAAAGCTGATGGCTACTTTGTAGGTGGTCTCTGGTTCCGACTGGGAGGCTGGCTCTGTCACTGTGCCACTCAGATGAAAGCCTGGATTGAGAGAGAAAGGAACATGAGTATCTGATGAATGTCAAGTATAACAAAGAATAGACTTCACTAGACACAGAAACTACTGGAAACATGTGGC

Function

NR:

description
PREDICTED: zinc finger SWIM domain-containing protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182112 True 502 lncRNA 0.47 1 12196272 12196773

Neighbor

gene id symbol gene type direction distance location
AMCG00005006 urod,LOC107674254,LOC107602521,LOC104943951 coding upstream 17820 12172167 ~ 12178452 (+)
AMCG00005007 NA coding upstream 40462 12150488 ~ 12155810 (+)
AMCG00005005 glis1,LOC105895029,LOC106574011 coding upstream 83344 12101060 ~ 12112928 (+)
AMCG00005008 glis1 coding upstream 112771 12066384 ~ 12083501 (+)
AMCG00004983 NA coding upstream 158890 12029197 ~ 12037382 (+)
AMCG00005014 NA coding downstream 104568 12301341 ~ 12307027 (+)
AMCG00005016 NA coding downstream 148753 12345526 ~ 12346830 (+)
AMCG00005015 dmap1,LOC107750524,LOC107699933,LOC107548533 coding downstream 151771 12348544 ~ 12368396 (+)
AMCG00005013 LOC107657453 coding downstream 276778 12473551 ~ 12480425 (+)
AMCG00005023 LOC106599374 coding downstream 377480 12574253 ~ 12607617 (+)
G144804 NA non-coding upstream 1934 12194126 ~ 12194338 (+)
G144788 LOC104960733 non-coding upstream 3539 12099364 ~ 12192733 (+)
G144683 acadm,LOC107094222,LOC102791601,LOC107094221,LOC107584839,LOC107674066 non-coding upstream 519367 11674239 ~ 11676905 (+)
G144682 NA non-coding upstream 522757 11672872 ~ 11673515 (+)
G144681 NA non-coding upstream 523787 11671555 ~ 11672485 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding downstream 42718 12239491 ~ 12242198 (+)
G144811 NA non-coding downstream 59515 12256288 ~ 12257869 (+)
G144908 NA non-coding downstream 419865 12616638 ~ 12616932 (+)
G144942 NA non-coding downstream 585397 12782170 ~ 12783644 (+)
G144960 NA non-coding downstream 750409 12947182 ~ 12948973 (+)
G144677 NA other upstream 532904 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 2180848 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 2445495 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 4462213 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 4503911 7672816 ~ 7692361 (+)
G144940 NA other downstream 583807 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 1958382 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3182826 15379599 ~ 15384811 (+)
G145932 NA other downstream 5568484 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 6618256 18815029 ~ 18821642 (+)

Expression


Co-expression Network