AMCG00010316


Basic Information

Item Value
gene id AMCG00010316
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23861894 ~ 23871756 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010316
CTTTGCTCGGCGCAGCAGCAGTCCGGCTTCCGCACATGTTGCAGTCGGCCCACACGTGTGCGGTGATCTAGCTGTGCGAGCACCCACCGACAGATGTATAGATCTAGACAAAGCGAATGTTTATATTTAGATTGTATAAAAAGAGCAGTTCGCGATATTATGGGTGTTAATATTTAGTAACGACTCGTGGTCTGGTTTCACGGAGCATGTCAGGACGCGTCAAGGATTATTCTTAAAGCCTGATAAGCCATGGACTGCAAATTCCCACCGATTCTCTTCCCGCAGTTTTTTAACACCGGACCTCCAGGCAAGAAGCCCGATGTTCTCCCAGTTGCAGGAGGATGGGGCGTCTACGGACAGTTAGTTGGAGTCGACAGCACTCAAGAGGGTCCTGGCCAAGGAGGCAGTGTGACCTTTGAACCCCAGCACAAAGTAAAGGGGGAGAGATGGAAAGCATTGGAACCCATTCCAGCTCCTCTGCTGCCCCCTAATTCAGattgcaAGGTTTCCTCACCAACTGACACCAAAGCATCAGACTTCCCGATACATaTGCAGAATTTCTACCTTGATAACTCTCTGGATGCCTTTGGTGCAATGAGCCATATTCTGGAAGAGCACTTCTATTTTGGTAATGGTGAGTTACAGGGCCATTTAAGACAAAATACCAAAAGCATGAAGACAATGAGAggatttttaaatgactttaaTTACCATAAgTGCCCCATGACGTTTTTCCGTTGGAAACCACGCTATTACAGCTACCTGTTTGGAGATTTGATTTACGACATCCCCCCTGCGCTGCTAGGAGAGCTCCTGCATGAGGAACTGATGCTGCAGGGCCACAGGGAGCAGTTCAACGAGGTGTCCACTGGGGGTGCTCTCGGGTACATACCGTTTGCAGAGACCAGTCACTCTCAAGAAGGTTGCTTGATTTATCCCAGACACGCTGCCCTGAACCAGCTCCATTTCCGCAAGATGGTGCTCGATTTCGAGGATGTCGGTGCCCCCAGGCTGAGTGTTGAGGACCAGTCTGTGAAGATGAATCTGAATGGAACAGTCCGTCAAATCAGCACAGGGAATATGCAAGAAAATGTTTTTGTGGGGGTGCGCTCAGATTATCACTGTAGCGTTTGGAGAATCAACAGCAACATGAAGCCGTCTTCTCTTGAGGTCATTCAGACCGATCAGCTTGCTACGTGCATCAGTGTGAGTCCTCATCTCCCAGGAGAGCTCCTGGTTGCCAGTGAGAGTGGTGCTGCGTATCTGTGGACTGTGGGCAAAGGGCTGCACAAGTTCCGCACTGAGACAGAGAACCTGTACTTCAATGGGCGGTCAGCATGGCGTTGGTGTGATTACACAGCCCACCCCCGGGTGATGATGTATGCTGACAGGACGGGGGTGGACCTCACAGACACCAGGTCTCCGGAAAATGCAAGCCACACTCTGTTTTACATTGGGAAGACCGCAGAATGCAAAAAGGGCGAGAGGGTAATCCTGCCCAAATATCTAAGAGATGTGAATTCCTACCACTACCTCATTACAACACAGTATTCCGCTTATATTTTGGATGAGCGTTTTCCTGGTCTGCCTGTGATGAAGTGGGAACACATGATGGATTTCCCCCCAATGTTTTCCCAAGTCATAGCAGGAGCTTCATGGGACAGGAGTAACAAAGTGCTGCTGGGTTCTCAGCGATCTGGACAGCTGATGATGTTGCAGTATTCTGGTGGTAGTCAAGCAGCCTGCCAGTCTCTGGGACCTCCTCACAAGCTGTCCAGCCCTTCTGACTGTCTGAGACACTTGCCTGTGCAGGTCCCTCACCGTCGAGAGAGAGCCGCGGAGAGACTGGATTCGCCCAGCGCAGGTTTGACGGCTCTCTACCATAACCAAGGCACGGAGTCGCTGTGTGTGCTCCAGTTGTCCGAGGCAGGAGATATCTTCTACCAGATACTGAGGCCTGAATCGGGAAACCTGGAAAATGAAGAAACATCAAGGAATATAGACCCCACTGATGAAGAGGAGGAATCCATAGATTCAACTCGGGAAACAACCCTGATTCAGCACGATGAACAAGAAACCTTGGAAAACAATATGACTGATACACAGAGTGAAACTGAAGATGAAGTAGTCCCGTCTTACCAAATTGAAACGGTGATTAATGACCTAGAGGAGCAGGACCTTGATTCAGAGTCCGACTCGCAAGACACTGTTGGCCAGTCCTCTTCTTTGAATCAAGGCATCTCAACCAGGCTTGCAAGAAGCCAAACTAACTCGGTATCACCTAGCAAGAAGCTGCTGGCCAGGTGGAAACATTGGCTGTCAGTCTTTCTTCAAAAGCCACCGTTGTCCCAAAAAATGACTAGATCTCACTGGGGCTTTAGAACCAGAAGGATCATGTCTTATAGTGCTTTCAGGAAGAGCACATCAGAGTTGACCAAATATGATGACGTGAAAGCAGAGTTGAAAGAATCGATGAAAAAAGAGGAGGCATTCGTCGGTATCTACACACGACCGCCGTCCATGGAAGTTGTGCAGATCCCAGATCCAGTGGACCCTTCGGAGTGGGGTGATGACCTGAGCAAGCGTCTCACAGCGTCTTGGGGAGGCAACTGGCAGACCTGGTGGGAGGATAAGCTGGGGCTGAACCATGACCAGAAGGTCGAGGCTCTGCGTAGGAAAAGGAGGCAGCAGAAACGGGCACGCCGGCGAATGTGCCTCTCGGGAAGCTTCGCCTCTTCGGTCAGCTATCAGTCAGACATGGATGAGCTTTCAGGTTGGTCCTCTGCGACTAGCAATTTTGGGGACAGTCAAGGCTGGGAGACATCATGCTCTGAGACAGGTGGACCTGCTACAACAGATTCGTCCACCCAGGATATAATCTCTGGATCTTGCAGGACTAATGAGAACAGTCCGGAACGATCTGTATGTAGCCAAGAGAATGAGCTGGCACTTGAAAATGCTACTGTTGCCTCCCAGGATGCCATTCTTTCCAATCGGGACACCGTTGTTACAGGATTTCCTCCGGTAAACAGGAGTTTGTTGTCTGTAGATAATGCAGACTGGTCAGATGCCACAAGATCTGTTATTTCACCGAGACCCTTGGAGTCTTTGCTCCCACAGAGCATTCTAAAGCCTCCCACTTCACTTGCTACAGAGGAGACACAGGATGCAGTGGAGGATGAGGGCTTCTTCCCTTTGGCTTCCTCTTCCCAAACCAGCACAGCTTTTTCACAGAAATCACGCACAGTGCCTTCCTCTCAAGGTTATCTGCGGTCTTCACAGCCAAAGAAGTCACGCATGGGCTTCTGA

Function

GO: NA

KEGG:

id description
K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010316 True 3309 mRNA 0.50 15 23861894 23871756

Neighbor

gene id symbol gene type direction distance location
AMCG00010317 NA coding downstream 8504 23842700 ~ 23853390 (-)
AMCG00010318 NA coding downstream 20626 23838986 ~ 23841268 (-)
AMCG00010311 NA coding downstream 100798 23734022 ~ 23761096 (-)
AMCG00010312 NA coding downstream 138989 23714037 ~ 23722905 (-)
AMCG00010305 NA coding downstream 195364 23647391 ~ 23666530 (-)
AMCG00010326 fech coding upstream 395476 24267232 ~ 24290661 (-)
AMCG00010327 nars,sync,LOC106572225 coding upstream 423391 24295147 ~ 24306861 (-)
AMCG00010334 rab27b,LOC106572338,LOC107717702 coding upstream 852815 24724571 ~ 24742655 (-)
AMCG00010336 NA coding upstream 947086 24818842 ~ 24825545 (-)
AMCG00010337 NA coding upstream 955752 24827508 ~ 24832544 (-)
G79648 NA non-coding downstream 395683 23461762 ~ 23466211 (-)
G79595 NA non-coding downstream 530379 23327498 ~ 23331515 (-)
G79594 NA non-coding downstream 534533 23326988 ~ 23327361 (-)
G79548 NA non-coding downstream 714825 23141385 ~ 23147069 (-)
G79542 NA non-coding downstream 752802 23108853 ~ 23109092 (-)
G79837 NA non-coding upstream 436148 24307904 ~ 24310189 (-)
G79872 NA non-coding upstream 729376 24601132 ~ 24650632 (-)
G79881 NA non-coding upstream 852079 24723835 ~ 24759263 (-)
G79882 NA non-coding upstream 928913 24800669 ~ 24804163 (-)
G79963 NA non-coding upstream 1852721 25724477 ~ 25724677 (-)
G79601 NA other downstream 496947 23359643 ~ 23364947 (-)
AMCG00010288 NA other downstream 775549 23082655 ~ 23086345 (-)
AMCG00010271 NA other downstream 1879844 21964529 ~ 21982050 (-)
AMCG00010262 shc3 other downstream 2289382 21541019 ~ 21572512 (-)
AMCG00010247 NA other downstream 2780069 21053624 ~ 21081825 (-)
AMCG00010343 hook3 other upstream 1644308 25516064 ~ 25556080 (-)
AMCG00010364 inip,LOC107658659,LOC107558675,LOC107571239 other upstream 2496176 26367932 ~ 26379747 (-)
AMCG00010371 NA other upstream 2540454 26412210 ~ 26426658 (-)
AMCG00010442 LOC107672760,LOC107738293,LOC107592320 other upstream 6080934 29952690 ~ 29961324 (-)
AMCG00010458 LOC107396140 other upstream 6639214 30510970 ~ 30520381 (-)

Expression


Co-expression Network