AMCG00020568 (gins3,LOC107714024,LOC107707437,LOC107589181,LOC107573213)


Basic Information

Item Value
gene id AMCG00020568
gene name gins3,LOC107714024,LOC107707437,LOC107589181,LOC107573213
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24849908 ~ 24854408 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020568
acaaacagcagcagcaaagaCAGTGCTTGTGTAGTTAGTGCATTGTTGGATTTACCAATTAATCGAGATAAAAATGACGACTCAATCCTATATACCAGTTGCGCCCGGTGTTGGAATGGAGGAGAGTTTTCTCTCTCTGGATGATATCTTGCTTTCACACGAGAAACTGCCGTGTCGGACAGAAACGGCCTTCCCCCGCCTTGGTTTCCTGGAGAAATCCAGTGACACCCGGGACATCCCAGAGGGGACAAAAATGGAGATGCCCCTGTGGCTGGCTAAGGGCCTGTATGACCGCAAGCGGCGTGTGGTGTCTGTGGATCTGCCCAAGGTGTATCGAGAGGGCTGGAGGACGGTGTTCAGCGCGGATCCCAACGTGGTCGATCTGCACAAGATGGGGCCTTATTACTATGGGTTGGGCTCTCAGCTTCTGCACTTTGAGAGCCCTGACAACACAGAGATCGCCCAGTGTGTGCTACAGACCTTCGTTGGGCGCTTCAGGCGGATCATGGACTCGTCCCAGAATGCCTACAACGAGGACACGTCCACACTGGTGGAGAAGCTGGACTGTTTGGAGAGGAGCTTGTTTCAGTCGGGACAGAATGGATTAAACGATTACCAGCGCTGGGAGAAGGGCCAGGCCTCGCAGATCACAGCCTCCAGCCTGGTGCAGAACTACCGCAAGAGGAAGTTCACTGACCTGGAGGCCTGAGAGGGACACTGTCAACCGGCCTCCCTGCAACCAATCGCTCTTTCACATACTGTAATTGTGGCAGATGTTATTTTGATTAATGCACCATAGCAAAGGATGGTCACAAAAGGGAAATTGCCCACAAGAAAGTGAATGAATCAGACCTAGAAGTGTGCGAATGTAATTCTACCCGTACTCTGTTTGccccattgtgtgtgtgctgcataGAGATAGACCAGTTTGTCATTCACAGGGCTAACCTTTTAACAGAATATCCTATACGATTCCAGGGCAGGCGAGAAGATTTATAATCCTCATTGGCCGAGACATGCTTTCAAAACTCACCATAAGATGTGACTCATACCGAAGAGATATGAGGCACTTCAAGACACTCCAGAGGTTTCAACTAGGtcagatttaatttgtattacagtGCATGGgactgtctgttttatttaattaaatagaaaGCTATGATCCTTTGCCTGAGCAGAACCCTTGAGGAATACTTCAGCCTGGCTCTGGCATACTTGTATGCATATCTGATATGAACTAACTTGTGAGTTTTTATCATTGGTATCGTATAGCAGCGGAAGTACATCACTGATGATTGTTATACGGACATGATTTTAAACGATCCATTATAAATCCATTCAAGATGCtactatttgtattttgtttgtttttccttttgagaGAGTGTCCTTTTATTTTGAATCTGTTCCAAATATATCTTCACTATTCAAACTGTTTTCAGCAGATTAGCCAAGCTTTTCTGCACTGTCCATTCCTGTTAGACAGACTATGgcaagaaagtaaaaaaattatacaaagaCTCTAAACCCTTAATATACAGTAATACCTTCTATATGTGCTTCATTGTACAGCTTGGACATTTCAAAGGGTGaaaatcaatgtgttttttgtgtgtagaagaattaaaacatttttatgtggAACAAATACAGGGAAAGCAAGATACGTTGCACAGGTGTACTCAGAATAAATCCATCAGTGACATACTGtatgtgaaaaataacaaagtatTTCAAACTTCTGGTGGACTTATGGTAATCCCAGCATTCTGcatgagtgtctgtgtgagatcCTGCTGTATTGGTGCCTGCACTGGTTTTGTGAAATTTGTCAGGTGTGAATACGACCCACACACACCTGATTAATTTTATGAGGGAGTAGTGTGTTGAAATGTGGATAAAAATAATGACCTAAATGAATACTTTTTTAACAAATCTTATATGTTCTCTAGGCCTAAGATTTAAGCATTGAACAATTAATTACAGCTATATAAGGTTGAATTATACAAGTAAGCAGCAATTTGAAGTGAACTGAGCCAGAAAACTTAGAATGAgcaagaaaaatacaacactaAGCACAAAAACTTAATCTCAGAAACAAATCTCAAACACAATGCAGCACAGAAACCAAGATGAAAACACACTTGTGTTTGAGGGAACCTTTCCCCACtggtatattattttctttggagTAGGCTGATCTCTTAAAACCAGCTGTTTAGTGAAGGGTTTTGATGTATGTGTACAAGGTATATTTGCCATTGTTGTTTAACAGTAGTGGACTTATTATGTATTCAAGAATAATTGTTAGGTGAACCAGAGCTCTTAAAACAGACTGTTTTTGGGCTTGACATGATCTGCTTACCTGGAAAATTAAAGTTGGGCCAGTTCCTCATTTTGGAGGTAAATGTTTTGGCAGCCAGTTGCCCTTTATTTATGAAACTGTCTCTTCAGTTTAAGGGGGTTTTGGATATAAA

Function

symbol description
gins3 Acts upstream of or within heart development. Predicted to be located in nucleus. Predicted to be part of GINS complex. Is expressed in alar plate midbrain region; nervous system; optic vesicle; pharyngeal arch; and presumptive neural retina. Orthologous to human GINS3 (GINS complex subunit 3).

NR:

description
PREDICTED: DNA replication complex GINS protein PSF3

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K10734 GINS3; GINS complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020568 True 2480 mRNA 0.42 3 24849908 24854408

Neighbor

gene id symbol gene type direction distance location
AMCG00020563 ldhd coding upstream 40642 24801317 ~ 24809266 (+)
AMCG00020557 NA coding upstream 93623 24747423 ~ 24756285 (+)
AMCG00020558 NA coding upstream 112008 24735974 ~ 24737900 (+)
AMCG00020562 NA coding upstream 142772 24706435 ~ 24707136 (+)
AMCG00020556 csnk2a2,LOC106573643 coding upstream 161493 24676689 ~ 24688415 (+)
AMCG00020567 NA coding downstream 13563 24867971 ~ 24880692 (+)
AMCG00020569 ndrg4,LOC107654158,LOC107571924 coding downstream 36894 24891302 ~ 24916908 (+)
AMCG00020571 NA coding downstream 83330 24937738 ~ 24943291 (+)
AMCG00020570 NA coding downstream 97148 24951556 ~ 24970823 (+)
AMCG00020576 NA coding downstream 176275 25030683 ~ 25031957 (+)
G64158 NA non-coding upstream 38097 24809964 ~ 24811811 (+)
G64122 NA non-coding upstream 153099 24696602 ~ 24696809 (+)
G64121 NA non-coding upstream 154354 24691997 ~ 24695554 (+)
G64069 NA non-coding upstream 252121 24594130 ~ 24597787 (+)
G64048 NA non-coding upstream 284416 24488904 ~ 24565492 (+)
G64185 NA non-coding downstream 90853 24945261 ~ 24946210 (+)
G64210 NA non-coding downstream 203761 25058169 ~ 25060329 (+)
G64220 NA non-coding downstream 209593 25064001 ~ 25064372 (+)
G64224 NA non-coding downstream 237384 25091792 ~ 25093030 (+)
G64226 NA non-coding downstream 242074 25096482 ~ 25096897 (+)
G64046 NA other upstream 367794 24478835 ~ 24482114 (+)
AMCG00020529 LOC107090538 other upstream 781451 24033037 ~ 24068457 (+)
G63939 NA other upstream 794316 24051989 ~ 24055592 (+)
G63786 znf821,LOC107747380 other upstream 1774963 23070411 ~ 23074945 (+)
AMCG00020505 NA other upstream 1787759 23053798 ~ 23062149 (+)
AMCG00020572 NA other downstream 207965 25062373 ~ 25076690 (+)
AMCG00020573 NA other downstream 223734 25078142 ~ 25084873 (+)
AMCG00020585 NA other downstream 604688 25459096 ~ 25472886 (+)
G64372 NA other downstream 696503 25550911 ~ 25553320 (+)
AMCG00020603 NA other downstream 907727 25762135 ~ 25778982 (+)

Expression


Co-expression Network