XLOC_006300


Basic Information

Item Value
gene id XLOC_006300
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 51741554 ~ 51795401 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013702
CTGCAGCCCGCGGCTCTTAAAGCGGCTCCACTGTTGATCTTTAAATCCCTCGCTGTCCCTCCAGTGGAAGCGCCATAGACTGGGAAGCGCGCAGCTCTTAAAGCGGCGACACCCACCGAGCGCGGCCCCTTTAAGAGTCGCGTTTTTCCATTGGCTTCGTGACGTCAGAGCGGCGCAGGGCTCTCCAGCAGCGGCGTGTGTGTCTTTCCTCGGCAAACGCGAGCAATGCGCGCACGGGAGAACCGAACGCCTGCGAAACCCGCTCCGCACAACAAGGATTACACCGGGGAACGCTTCCAGTCATGGCGGAGCAGTGAAACGGACGCGTCGAGGAAAAACGCGCGCTGATTCTGCGTACAAGACGCGCAGGAGCATGCAGGAGCCCAGCTGATCTAGACTCGAACCCCCAGCGTTTTGACCCCGACAAACACTACAGCACGACTACACGCAGCGCTCGCGACACAGAAAGCTCATCAATTTAGCTAATTAGTGTCTCCGCGAGCTGGTTAATGATGGCGGGGAAGCTGACGGCGGGCGCGGGAATACTGCTGGTCACCGCCAACGTCGGATCGCTGTTTGAAGATGTGGCTCTGTAACTCAACAGATCCTGGCATCCGGATGGGTTGGATaatttattaactattaaaaAGCTTTCGGCCTGAAGTCAATTTACAGTCAAAGTGAAGCCACAGAAGCAGAAAGCCAGAGCTCATCCACCTCCATTAGAGTGTGGGGTGAAcactgtgttgtgttgtgtggtaGTTCTGGATGTGGTGTGATCCGCAAGAGGATGTGGG
>TCONS_00013441
GTTTTTCCATTGGCTTCGTGACGTCAGAGCGGCGCAGGGCTCTCCAGCAGCGGCGTGTGTGTCTTTCCTCGGCAAACGCGAGCAATGCGCGCACGGGAGAACCGAACGCCTGCGAAACCCGCTCCGCACAACAAGGATTACACCGGGGAACGCTTCCAGTCATGGCGGAGCAGTGAAACGGACGCGTCGAGGAAAAACGCGCGCTGATTCTGCGTACAAGACGCGCAGGAGCATGCAGGAGCCCAGCTGATCTAGACTCGAACCCCCAGCGTTTTGACCCCGACAAACACTACAGCACGACTACACGCAGCGCTCGCGACACAGAAAGCTCATCAATTTAGCTAATTAGTGTCTCCGCGAGCTGGTTAATGATGGCGGGGAAGCTGACGGCGGGCGCGGGAATACTGCTGGTCACCGCCAACGTCGGATCGCTGTTTGAAGATCCGGAGAACCTGCAGAAGACGTGGCTGCGCGAGTTCTGTCAGacggTTCAGTCTCACCGGCCGCAGTTCGTGGCTCTGCACTGTCAGGAGGTCGGAGGGAAAAACTACGAGGCGTCGATGACACACGTGGACAGCTTCATCAAagaGCTGCTGTCCAGCGACGCTATGAAGGACTTCAACCGAGTGCGGGTTTACCTGGACAAGAACTACACATCGCAGGAGCAGTTCACAGTgagtcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcagcatcATCTGGATGAGCAGATTCACTGTAGGAACACTAGAGGGCGACACTGCCTTTATTTTAATCATCTGCTCAGATCGGGCTTACAGACTTTTCTTGTCAAACattgtagatgtgtgtgtgtgtgtgtgtgtgtgtatatagttgaATTTACAGACAATATCCTCGGCTATATCGTGATTTATGATCTATCATAATGAATATATGAGAGGGCTtatatattgcatattatattCAGTATTATGTGTTGGTTATGGAGGATTTTGAGATCTGCTGGTTGTTGCTGATGGTAAAACACAGGTTTTGTTTATAACATTTACCTGCTGTTTACTCATGATGATGATCTCCTGTAGTAAACTTCTGCTCTGTCTTCATCACTTCTGAATGATAATCATAATATTTGAGGTCATGAACATGTTATGTCTGCATAACACCAGGTTTGGACTGAACTTGTAATCTCATTAaagcattatgttttttttttttatgaggacACGAGAAGACTTTTTTTATACTTATGAAAGATATAGTTAAAAAATGAAAcgggatagatagataaattgatagatagacggatggaaggatagatagatggacagacggatggactgatggatggatagatagattaatgaatggatggatggac
>TCONS_00013703
AGGGCTCTCCAGCAGCGGCGTGTGTGTCTTTCCTCGGCAAACGCGAGCAATGCGCGCACGGGAGAACCGAACGCCTGCGAAACCCGCTCCGCACAACAAGGATTACACCGGGGAACGCTTCCAGTCATGGCGGAGCAGTGAAACGGACGCGTCGAGGAAAAACGCGCGCTGATTCTGCGTACAAGACGCGCAGGAGCATGCAGGAGCCCAGCTGATCTAGACTCGAACCCCCAGCGTTTTGACCCCGACAAACACTACAGCACGACTACACGCAGCGCTCGCGACACAGAAAGCTCATCAATTTAGCTAATTAGTGTCTCCGCGAGCTGGTTAATGATGGCGGGGAAGCTGACGGCGGGCGCGGGAATACTGCTGGTCACCGCCAACGTCGGATCGCTGTTTGAAGATTTCAGTCTTAAGATCTGGTTGTGATGCAGGCTTTTCT
>TCONS_00013704
TGCGCGCACGGGAGAACCGAACGCCTGCGAAACCCGCTCCGCACAACAAGGATTACACCGGGGAACGCTTCCAGTCATGGCGGAGCAGTGAAACGGACGCGTCGAGGAAAAACGCGCGCTGATTCTGCGTACAAGACGCGCAGGAGCATGCAGGAGCCCAGCTGATCTAGACTCGAACCCCCAGCGTTTTGACCCCGACAAACACTACAGCACGACTACACGCAGCGCTCGCGACACAGAAAGCTCATCAATTTAGCTAATTAGTGTCTCCGCGAGCTGGTTAATGATGGCGGGGAAGCTGACGGCGGGCGCGGGAATACTGCTGGTCACCGCCAACGTCGGATCGCTGTTTGAAGATGCCGGACAGGAAGTCCAGAGCCGCTCTGAGGGTGTGACGTTTCTCCGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013702 False 797 lncRNA 0.56 2 51741554 51767383
TCONS_00013441 False 1381 lncRNA 0.47 4 51741695 51795401
TCONS_00013703 False 445 lncRNA 0.57 2 51741730 51774396
TCONS_00013704 True 406 lncRNA 0.59 2 51741780 51774449

Neighbor

gene id symbol gene type direction distance location
XLOC_006299 pwwp2b coding upstream 10256 51710725 ~ 51731298 (+)
XLOC_006298 NA coding upstream 115987 51617783 ~ 51625567 (+)
XLOC_006297 nkx6.2 coding upstream 157290 51579851 ~ 51584264 (+)
XLOC_006296 NA coding upstream 278887 51444994 ~ 51462667 (+)
XLOC_006295 NA coding upstream 301661 51433834 ~ 51439893 (+)
XLOC_006301 LT631684.1 coding downstream 58315 51853716 ~ 51881759 (+)
XLOC_006302 lclat1 coding downstream 160996 51956397 ~ 51963460 (+)
XLOC_006303 klhdc3 coding downstream 186363 51981764 ~ 51988216 (+)
XLOC_006304 npas4l coding downstream 210852 52006253 ~ 52017013 (+)
XLOC_006305 CABZ01089777.1 coding downstream 265633 52061034 ~ 52069970 (+)
XLOC_006294 CABZ01094390.1 non-coding upstream 310237 51428398 ~ 51431317 (+)
XLOC_006293 NA non-coding upstream 408790 51328470 ~ 51332764 (+)
XLOC_006307 NA non-coding downstream 325436 52120837 ~ 52136375 (+)
XLOC_006308 NA non-coding downstream 374548 52169949 ~ 52174571 (+)

Expression


Co-expression Network