G161076 (epb41l3,LOC107728994,LOC107698703,LOC108432756)


Basic Information

Item Value
gene id G161076
gene name epb41l3,LOC107728994,LOC107698703,LOC108432756
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 5690585 ~ 5808643 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU238565
GTTCTCTTCATTCGTGTCTCAATGCAAAGGGATGAATGGAAACTGCAAAATGATCAGAAATGGAATCGAGATTTTATTGGAGTTGCTTGAGTGAGAAACAGTCAGCAGGGCGGCGACACGGCATTGGAAAACAAACAaggacataaacacacatgGGCTTGGTCTGTACAGTTTAAGGCTCAGATGTGGCACTCTGGGCAGGGAGGACTCTGGGATTGATTTTGCAGGGCAGCGATCGTCATTACAGCAGCTCTCGGAGAGCTTCATTCCTCTAAGCTCAATGTTCACAAGTGACAGTTCTCAAAAAGAAACAGGAACAGGTGTGTGATTCaagtaaaaacaacataacacGTCTCTAACATACATGTGTGGCATATTCATATCCTCGTAATGAACGTGTGTCATATGCAACGTGAGCAGATCGGAGATGAGCCGACGGAGCGTGGATGGCACATCTTTGCGCGATTAAATATTGTGCAAAGTTCGTCCTTTTTTAAAGTGAGCAGGAATCagtagaataaataaatgtagatatCTGCAACCGTTATATTTCTTCTCACACATACTCTTCGGTCCTCTTATGACGAGCTCGTGGTTTGACTATGCACTGCGCTCATATAGTATTTACTAAAAGGTCTATATACTGTAGTCTCCTCACAAAAAGCAGAATTGTTCCCTTGTCATGcagtaacagtgatccagtgcGGCGCCtgtaagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttactccaGACGTGTTCAGATGACGTTCGCTGCGATTCGTTCATTGATGCTGCTGTTCCTGTGTTGATTTCTCTGAAGCATCCTTCCTTTTCCACAGCATGAACACACGAGTTCCTCCAGAAAGCGTGAAGATGATGTTAACCTCGTCATGATCGATGTCTGCGTCTCCTGAGATCACGATTCTCTTCTCAATCCGTGTTTCTGAGATTCCACCCTTCActgtctgtcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagagagagagacacacacacacacacacacacagagagagacacacacacacacacacacacacacacagagacacacacacacac
>TU238566
TTGTAGTTCTTGTGCAGGTCCATGATCTTCTCCTCCATCTCTTTGGTCTGATGTGGAGCGAAACGAAACTCGCTGACGTAGTCGGAGCCGTACTCGTCCGGGTCATAATCGCCCAGCTCCGACTGAACCGTGTACGAGCCCAGAACTGTGTGTGTGGCGAACGAACACGGGAGACGACCCGACACGATATCATCCCTTAACTGTAAACACAGGTAAtatctgaaacacacagagacacacacacacacacacacagagacacacacacacacacacacagagagagacacacacacacacacacacacacacacagagacacacacacacac
>TU238568
GTTCTCTTCATTCGTGTCTCAATGCAAAGGGATGAATGGAAACTGCAAAATGATCAGAAATGGAATCGAGATTTTATTGGAGTTGCTTGAGTGAGAAACAGTCAGCAGGGCGGCGACACGGCATTGGAAAACAAACAaggacataaacacacatgGGCTTGGTCTGTACAGTTTAAGGCTCAGATGTGGCACTCTGGGCAGGGAGGACTCTGGGATTGATTTTGCAGGGCAGCGATCGTCATTACAGCAGCTCTCGGAGAGCTTCATTCCTCTAAGCTCAATGTTCACAAGTGACAGTTCTCAAAAAGAAACAGGAACAGGTGTGTGATTCaagtaaaaacaacataacacGTCTCTAACATACATGTGTGGCATATTCATATCCTCGTAATGAACGTGTGTCATATGCAACGTGAGCAGATCGGAGATGAGCCGACGGAGCGTGGATGGCACATCTTTGCGCGATTAAATATTGTGCAAAGTTCGTCCTTTTTTAAAGTGAGCAGGAATCagtagaataaataaatgtagatatCTGCAACCGTTATATTTCTTCTCACACATACTCTTCGGTCCTCTTATGACGAGCTCGTGGTTTGACTATGCACTGCGCTCATATAGTATTTACTAAAAGGTCTATATACTGTAGTCTCCTCACAAAAAGCAGAATTGTTCCCTTGTCATGcagtaacagtgatccagtgcGGCGCCtgtaagcatgtgtgtgatggtgtgtgtgtggtcaatGTCTCCATGGTGAGCGATACACTCAAACACAGCGTCAGGACGATTTCATGTCTCTTCATTCAAAATACactcaaaatgtgaaatatgtttcagatttaaatgagctgttttctctgtgaatgtgtgttaaagtgtactttatttctgtgaagcgcagatgaattttcagcatcattacagaaatcataataatatactgattcactgctcgacaaacatttctgattattatcagtgttaaaaacagttaaatgttgaaaacagtataatatattatttatattgaataaaaagtatttacatatactaaatcaaataacagcatttatgtgAAGTAGAAATCTTTACTGGCCcttttgatccatttaatgcatccttgatgaataaaagtattaatttctttttaagatGATCTTTATATAGTTACTCAGATGCTAAACAGTTCATCTTGAGACACGTTTCCTCTCTCTGCCGTCCTGAAGGAGTGTGTGTCACGTGTTCTACGGTGTGTTTGTGGATGAGAGACACACACCTGTAGGGACTCGTACGTGATGGTCTTCATCTCCGTCTGGATCACAGGAGTGTCCGAGTCTCCTGAGAGAGTCCTGGAGAAACTCACCACAcctgactgagagagagagaggagactagtcacacacacacacacacacacacacacacacacacacacagtcactgcTCTAGTCTACAACAATTAGGTAATCAGATAAATTAATAATCACTGATTCCCAAAAATTAATGGAAACAAACACTGGGAGAAAGTCGAGGAGGAATGAGGAGTTCTGGAGAGAAGAGAACCAACACAAGATCTTCTGAAGCAGCTGCAGCGTCACATCTGacttattaatcattaatacCATGATACCTGatcactccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>TU238569
GTTCTCTTCATTCGTGTCTCAATGCAAAGGGATGAATGGAAACTGCAAAATGATCAGAAATGGAATCGAGATTTTATTGGAGTTGCTTGAGTGAGAAACAGTCAGCAGGGCGGCGACACGGCATTGGAAAACAAACAaggacataaacacacatgGGCTTGGTCTGTACAGTTTAAGGCTCAGATGTGGCACTCTGGGCAGGGAGGACTCTGGGATTGATTTTGCAGGGCAGCGATCGTCATTACAGCAGCTCTCGGAGAGCTTCATTCCTCTAAGCTCAATGTTCACAAGTGACAGTTCTCAAAAAGAAACAGGAACAGGTGTGTGATTCaagtaaaaacaacataacacGTCTCTAACATACATGTGTGGCATATTCATATCCTCGTAATGAACGTGTGTCATATGCAACGTGAGCAGATCGGAGATGAGCCGACGGAGCGTGGATGGCACATCTTTGCGCGATTAAATATTGTGCAAAGTTCGTCCTTTTTTAAAGTGAGCAGGAATCagtagaataaataaatgtagatatCTGCAACCGTTATATTTCTTCTCACACATACTCTTCGGTCCTCTTATGACGAGCTCGTGGTTTGACTATGCACTGCGCTCATATAGTATTTACTAAAAGGTCTATATACTGTAGTCTCCTCACAAAAAGCAGAATTGTTCCCTTGTCATGcagtaacagtgatccagtgcGGCGCCtgtaagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttactccaGACGTGTTCAGATGACGTTCGCTGCGATTCGTTCATTGATGCTGCTGTTCCTGTGTTGATTTCTCTGAAGCATCCTTCCTTTTCCACAGCATGAACACACGAGTTCCTCCAGAAAGCGTGAAGATGATGTTAAtcctgaaaataaatcaaacggAACATTCGGTCAGGAACAGGAACACGCAGTGAAGGAACAGAAAGAACCTTCAGAGGAGCCAAGCTTGAGTCTATCGGTGATGATGTCAAACATGTCATGCATTTCAAAGAACGTAAAAACTCAGTAACATGCCTCCATTTCAACATTATCTCACTGAAACTGAAGATCTACATTTTCCTCAGGAAAATGTCGGTGGTGTTTCCGGCGCAACAATGACGAAGGCATTGTTATGCGGTTTGTGTCTATGTGGTGTACAGCGCGGTTGCTATGGTAATCTGCTTTGATGTCAGGGTGTTTTTGGGTGGTTACCTTGTGGTTGCTAGGATTGTTATGGTGttctggttggttgctagggttgTTTTGGATGTTATAAGTGGGAACTATGGTTGTTATAGTGTTCTGGGTACGTGTTAGAGTATTCTAGATGGTGTTATGGGGGGTAActctgtggttgctaggTATGTTTTGG
>TU238571
GTTCTCTTCATTCGTGTCTCAATGCAAAGGGATGAATGGAAACTGCAAAATGATCAGAAATGGAATCGAGATTTTATTGGAGTTGCTTGAGTGAGAAACAGTCAGCAGGGCGGCGACACGGCATTGGAAAACAAACAaggacataaacacacatgGGCTTGGTCTGTACAGTTTAAGGCTCAGATGTGGCACTCTGGGCAGGGAGGACTCTGGGATTGATTTTGCAGGGCAGCGATCGTCATTACAGCAGCTCTCGGAGAGCTTCATTCCTCTAAGCTCAATGTTCACAAGTGACAGTTCTCAAAAAGAAACAGGAACAGGTGTGTGATTCaagtaaaaacaacataacacGTCTCTAACATACATGTGTGGCATATTCATATCCTCGTAATGAACGTGTGTCATATGCAACGTGAGCAGATCGGAGATGAGCCGACGGAGCGTGGATGGCACATCTTTGCGCGATTAAATATTGTGCAAAGTTCGTCCTTTTTTAAAGTGAGCAGGAATCagtagaataaataaatgtagatatCTGCAACCGTTATATTTCTTCTCACACATACTCTTCGGTCCTCTTATGACGAGCTCGTGGTTTGACTATGCACTGCGCTCATATAGTATTTACTAAAAGGTCTATATACTGTAGTCTCCTCACAAAAAGCAGAATTGTTCCCTTGTCATGcagtaacagtgatccagtgcGGCGCCtgtaagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgagtgagtgtgtgtgtgtgt

Function

symbol description
epb41l3 Predicted to enable cytoskeletal protein-membrane anchor activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in several processes, including myelination; protein localization to juxtaparanode region of axon; and protein localization to paranode region of axon. Located in cell-cell junction and plasma membrane. Biomarker of meningioma.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238565 False 1133 lncRNA 0.45 4 5690585 5808643
TU238566 False 332 lncRNA 0.51 3 5690585 5785390
TU238568 True 1747 lncRNA 0.41 3 5803319 5808643
TU238569 False 1386 lncRNA 0.44 2 5774590 5808643
TU238571 False 810 lncRNA 0.44 2 5782595 5808643

Neighbor

gene id symbol gene type direction distance location
lrrc30a lrrc30,lrrc30a,LOC107562767,LOC107566924,LOC107743992,LOC107579084,LOC107566920 coding downstream 74617 5613811 ~ 5615968 (-)
ptprma ptprm,LOC108432749,LOC108271270,LOC106579657 coding downstream 85592 5427581 ~ 5604993 (-)
crygn2 crygn2,crygn,LOC107744746,LOC107566923,LOC107653877 coding downstream 324473 5362889 ~ 5366112 (-)
xylb xylb coding downstream 343380 5310990 ~ 5347205 (-)
LOC122329619 LOC107557625,LOC107756192,LOC107557627,LOC107573470,LOC107717306,LOC107571437 coding downstream 387557 5294661 ~ 5303028 (-)
vapa LOC107698706,LOC107728995,LOC107653890,LOC107729949 coding upstream 37890 5846533 ~ 5852263 (-)
twsg1b LOC107572616,LOC106579643,LOC108432738,LOC103038715,LOC105025733 coding upstream 55874 5864517 ~ 5870090 (-)
ssr1 ssr1,LOC107698707,LOC107690869 coding upstream 64091 5872734 ~ 5876784 (-)
LOC122329918 nebl,LOC108250945,LOC106903449 coding upstream 71327 5879970 ~ 5907681 (-)
LOC122329919 nebl,LOC107572611,LOC107698708,LOC107756860 coding upstream 100840 5909483 ~ 5918965 (-)
G161052 NA non-coding downstream 296865 5356554 ~ 5393720 (-)
LOC122329809 NA non-coding downstream 320215 5307752 ~ 5370370 (-)
G161035 NA non-coding downstream 327120 5318941 ~ 5363465 (-)
G161045 NA non-coding downstream 380085 5309981 ~ 5310500 (-)
LOC122329622 NA non-coding downstream 412765 5274956 ~ 5277820 (-)
G161140 snx16 non-coding upstream 189649 5998292 ~ 6002580 (-)
G161146 NA non-coding upstream 206572 6015215 ~ 6015793 (-)
G161191 NA non-coding upstream 497623 6306266 ~ 6307192 (-)
G161193 NA non-coding upstream 499958 6308601 ~ 6308962 (-)
G161184 NA non-coding upstream 501146 6309789 ~ 6311843 (-)
rheb rheb,LOC106579659,LOC107653878,LOC106590380 other downstream 267517 5372155 ~ 5423068 (-)
LOC122329620 LOC107711609,LOC107569850,LOC107554368,LOC107560358,LOC107568663 other downstream 400163 5287164 ~ 5290422 (-)
ttc21a LOC107713329,LOC107554359 other downstream 777083 4897012 ~ 4913502 (-)
LOC122329978 LOC106514910,LOC102208621,LOC108261464,LOC105941235,LOC108229141,LOC107687159,LOC108436088,LOC108436074 other downstream 859858 4829539 ~ 4830727 (-)
G160938 smyhc2,LOC107687159,LOC108271487,LOC108436074,LOC108436088 other downstream 861330 4827249 ~ 4829255 (-)
G161139 NA other upstream 187458 5996101 ~ 5996690 (-)
LOC122329398 fbxl7,LOC107718179,LOC107689422,LOC107589836,LOC107688519,LOC107722558,LOC107585539,LOC107653805,LOC107714010,LOC107566917,LOC107734313,LOC107565690,LOC107655697 other upstream 254956 6063599 ~ 6086816 (-)
LOC122330195 pard3,LOC107713921,LOC107734328,LOC107692754,LOC108431315 other upstream 292101 6100744 ~ 6120917 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other upstream 587528 6396171 ~ 6470101 (-)
G161327 LOC107713878 other upstream 1136543 6945186 ~ 7005408 (-)

Expression


Co-expression Network