G161088


Basic Information

Item Value
gene id G161088
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 5727559 ~ 5728615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU238587
aaaaaaaggaaatcggaagagaaagaaaatgaaatgaaaagcacaaaatcgaaaaaaaaaatttgaatggaAATTACAAacgtgaaaacaaaaaataaaaaaagtaatatactgCATAAGAGgagaaaaatagataaaaagaaataaagaaaaaaaagaactatgTTTTAAAAACTGAGTAGAAGTCAAACTCTAGAGGATGTTCACGGTGACCTCTGATTTAACCTTCAGATGATGAAGAACTGATCTGAGAACAGTTATCTGATGTCTTCTGGTCGATCTCAGAAGAACCGGATCCTTCAGACCGAATCAATCCCAGCTTCTTCTAATCTCTCGAGGTCCACCGAAGCTCAATATTAACTGATATCTAGTCTGGACCGCACTTCCAGATAACTGAGTCATTAACCAGTAGTTTTTAAAACGGATAAAATGATAGCAATTATGACATTAAACACTTGTCAAAGACTGGCGCTTGAGGGACTGCTGTggttctttctttctgtggtTCTCTGCATCTACTCAACAAATGAAGGACTTTATATTGACATgaaaacatgtgtgtgtttaaacgTGTCCTGCTCTCTCTACACAGAACAAACACGTCCTCCTGTAGTCCAGCTAGTTAGCTCTCAGCCGCTAAAACATGACTACCGGTGCCGATTAATcagaaaagtacaaaaacagTACATCGGACGATCTCTACTATAACCACCGTCTCAGAGGAACTCAACCAGACCTAACCAAACTAACCAGATAACCAGACATTATCTGGTCCAGAGCAGCAGAgacacttttcaaaataaaagtatttgtttatataatatatgggtatgtactgtgtatatttatgaacacacacacacacacacacacacacacacacacacacatatatatatatttataattacaggGAAGCATCTGGAGACTAGAAACCCTCACCTGAAATAACACTGTTCACATCGATGTCATCCTCTTCATCCTTGATACGCAGATACTTCGTGGACTGAGAGAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238587 True 1017 lncRNA 0.37 2 5727559 5728615

Neighbor

gene id symbol gene type direction distance location
arhgap28 LOC107747481,LOC107653873,LOC107698695,LOC107559389,LOC107728987,LOC107570873 coding downstream 34688 5671379 ~ 5692871 (-)
lrrc30a lrrc30,lrrc30a,LOC107562767,LOC107566924,LOC107743992,LOC107579084,LOC107566920 coding downstream 111591 5613811 ~ 5615968 (-)
ptprma ptprm,LOC108432749,LOC108271270,LOC106579657 coding downstream 122566 5427581 ~ 5604993 (-)
crygn2 crygn2,crygn,LOC107744746,LOC107566923,LOC107653877 coding downstream 361447 5362889 ~ 5366112 (-)
xylb xylb coding downstream 380354 5310990 ~ 5347205 (-)
vapa LOC107698706,LOC107728995,LOC107653890,LOC107729949 coding upstream 117918 5846533 ~ 5852263 (-)
twsg1b LOC107572616,LOC106579643,LOC108432738,LOC103038715,LOC105025733 coding upstream 135902 5864517 ~ 5870090 (-)
ssr1 ssr1,LOC107698707,LOC107690869 coding upstream 144119 5872734 ~ 5876784 (-)
LOC122329918 nebl,LOC108250945,LOC106903449 coding upstream 151355 5879970 ~ 5907681 (-)
LOC122329919 nebl,LOC107572611,LOC107698708,LOC107756860 coding upstream 180868 5909483 ~ 5918965 (-)
G161068 NA non-coding downstream 21061 5705767 ~ 5706498 (-)
G161067 NA non-coding downstream 22732 5701141 ~ 5704827 (-)
G161052 NA non-coding downstream 333839 5356554 ~ 5393720 (-)
LOC122329809 NA non-coding downstream 357189 5307752 ~ 5370370 (-)
G161093 NA non-coding upstream 63994 5792609 ~ 5794258 (-)
G161140 snx16 non-coding upstream 269677 5998292 ~ 6002580 (-)
G161146 NA non-coding upstream 286600 6015215 ~ 6015793 (-)
G161191 NA non-coding upstream 577651 6306266 ~ 6307192 (-)
G161193 NA non-coding upstream 579986 6308601 ~ 6308962 (-)
rheb rheb,LOC106579659,LOC107653878,LOC106590380 other downstream 304491 5372155 ~ 5423068 (-)
LOC122329620 LOC107711609,LOC107569850,LOC107554368,LOC107560358,LOC107568663 other downstream 437137 5287164 ~ 5290422 (-)
ttc21a LOC107713329,LOC107554359 other downstream 814057 4897012 ~ 4913502 (-)
LOC122329978 LOC106514910,LOC102208621,LOC108261464,LOC105941235,LOC108229141,LOC107687159,LOC108436088,LOC108436074 other downstream 896832 4829539 ~ 4830727 (-)
G160938 smyhc2,LOC107687159,LOC108271487,LOC108436074,LOC108436088 other downstream 898304 4827249 ~ 4829255 (-)
G161139 NA other upstream 267486 5996101 ~ 5996690 (-)
LOC122329398 fbxl7,LOC107718179,LOC107689422,LOC107589836,LOC107688519,LOC107722558,LOC107585539,LOC107653805,LOC107714010,LOC107566917,LOC107734313,LOC107565690,LOC107655697 other upstream 334984 6063599 ~ 6086816 (-)
LOC122330195 pard3,LOC107713921,LOC107734328,LOC107692754,LOC108431315 other upstream 372129 6100744 ~ 6120917 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other upstream 667556 6396171 ~ 6470101 (-)
G161327 LOC107713878 other upstream 1216571 6945186 ~ 7005408 (-)

Expression


Co-expression Network