LOC122329398 (fbxl7,LOC107718179,LOC107689422,LOC107589836,LOC107688519,LOC107722558,LOC107585539,LOC107653805,LOC107714010,LOC107566917,LOC107734313,LOC107565690,LOC107655697)


Basic Information

Item Value
gene id LOC122329398
gene name fbxl7,LOC107718179,LOC107689422,LOC107589836,LOC107688519,LOC107722558,LOC107585539,LOC107653805,LOC107714010,LOC107566917,LOC107734313,LOC107565690,LOC107655697
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 6063599 ~ 6086816 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU238681
ggacggcttgggggtgagtaaagtGTGGGGTAATTTTAGCTTTtgggcaaactattcctttaacttttttttttatccatttatttatatttttattcacttatatatttttgattactCATCTTGTTTATGGCAGGTTGTATTACGTGTAACATGTACATTTCAATTTGTTGGCGTGTAAAGGATTACATGATGTGACGTTAACCAGAAACTAGACATATTTCCCAGAACTAAGGCGGTCCACGGTTCGTGTTTGTTGATGTTTACATTTGATATCTCTGTTATgaatgttttgctttgtttcatcATGTAAGCCTTGTAATAGCTTGGTTTCCATCTTGGTTTCATTGACCAGGAATATTTCAAACAGTGCCATTTTGCTGTGACGTTCACCTTTGTAATGGTCAATAAGGCTTTTTCAGGTGTTTAACAAATGGAAGACCACAGTGGAATAAAGAGGTCTAAGc
>TU238686
AGGCAAGGCTAGCTCCAGTATCTCCTCCGATGTGAGCTCCAGCACTGATCATACGCCCACCAAAGCTCCCAAGAATGTGGCTACCAGTGAAGATTCGGACCTGAGCATGAGGACTCTTAGCACTCCTAGTCCCGCTCTCATCCTGAAGTCAAACCCTCCTCAAACGGTCCCAAACGGCAATGAAACGTCTTCCCCGTTTTTTACCGTCACCGGTGAAACAGTGGCTCTGGTTCACCCTCCTCCAGGCTCTCGCTCACGGCCCTCCAGAGTCCCTCCGACCGCCCTCATCGACAGCCTGCCCGATCCCGTCTTACTCCAGGTGCTGTCCTACCTGTGCACCCCTCAGCTGTGCCGCTGCGCTCGGGTGAGCCGGCGCTGGTATAACCTGGCCTGGGACCCGCGGCTCTGGAGCAGCGTCCGTCTGACCGGAGAGCTGCTGAGCGCCGACCGGGCCCTCAAGGTGCTC
>XM_043225599.1
ATGGCGCTCAAAATCATGCTCGAGCATGCTCACGAAAACAAGCTGTTTTGACGAAATGTTATTTCCTTCTGTCCCACGCAGGCAAGGCTAGCTCCAGTATCTCCTCCGATGTGAGCTCCAGCACTGATCATACGCCCACCAAAGCTCCCAAGAATGTGGCTACCAGTGAAGATTCGGACCTGAGCATGAGGACTCTTAGCACTCCTAGTCCCGCTCTCATCCTGAAGTCAAACCCTCCTCAAACGGTCCCAAACGGCAATGAAACGTCTTCCCCGTTTTTTACCGTCACCGGTGAAACAGTGGCTCTGGTTCACCCTCCTCCAGGCTCTCGCTCACGGCCCTCCAGAGTCCCTCCGACCGCCCTCATCGACAGCCTGCCCGATCCCGTCTTACTCCAGGTGCTGTCCTACCTGTGCACCCCTCAGCTGTGCCGCTGCGCTCGGGTGAGCCGGCGCTGGTATAACCTGGCCTGGGACCCGCGGCTCTGGAGCAGCGTCCGTCTGACCGGAGAGCTGCTGAGCGCCGACCGGGCCCTCAAGGTGCTCACCCATCGCTTGTGTCAGGACACTCCTAACGTCTGTCTGACCCTGGAGAGGCTGGTGGTCAGCGGCTGCCGGAGGCTGTCGGACCGAGGGCTGCGTGTGGTCGCTCAGAGCTGCCCGGAACTGCGGCGTTTGGAGGTCGCAGGCTGCTATAACGTGTCCAACGAAGCAGTGTTTGACGTGGTCTCCCAGTGTCCTAACCTGGAACATCTAGACGTATCAGGGTGCTCTAAGGTGACCTGCATCAGCCTGACGCGGGACGTGTCCGTCAAACTCTCCCCTCTTCACGGGCAGCAGATCTCCATCCGCTATCTTGACATGACGGACTGTTTTGCTCTGGAGGACGAAGGCCTGCACACCATTGCCGCCCACTGCACTCAGCTCACCCACCTCTACCTGCGGCGCTGTGTGCGGCTGACCGACGAGGGCCTGCGCTTCTTAGTCATCTACTGCCCGTCCGTGCGGGAGCTGAGCGTCAGCGACTGCCGCTTCGTCAGTGACTTCGGCCTGCGGGAGATCGCCAAACTCGAGGGCCGCCTGCGCTACCTCAGCATAGCGCACTGCGGCCGCATCACAGACGTGGGCGTGCGTTACGTAGCCAAATACTGCAACAGACTGCGTTACCTGAACGCTCGGGGCTGCGAGGGGTTGACGGACCACGGCATCGAGCACCTCGCCAAGAACTGCCTCAAGCTCAAGTCCCTGGACATCGGGAAGTGCCCGCTGGTGTCGGACGCCGGCCTGGAGCAGCTTGCACTAAACTCCTTCAACCTGAAGAGACTGAGCCTGAAGTCATGCGAGAGCATCTCGGGCCGCGGGCTGCAGGTGGTGGCGGCCAACTGCTTCGACCTTCAGCTGCTGAATGTACAGGACTGTGATGTGCCACTGGAGGCGCTGCGCTTTGTCAAGCGTCACTGCAAACGCTGCGTCATTGAACACACCAATCCAGCCTTTTTCTGAGAGCTGCACAGACTGGGATTGTGTGCTCTTGTGACCCGGGCCGGTGACGTCTCTGCTGGACAACACAGTGGAGATTTGCACTGCTGCACCTCTGTATTTAATTTGCATGGTTGGGAGAaatattaaaggaacagtttccccgaaaatgaaaattaccaaACAATCTACTCAcctccaagccatcctaggtgtatatgactttcttctttcagacgaacacagagtttaaaaaaaaattatcctggctcttccaagcttagtaatgctggtggatagtggcccttattttgaagctctataaattattatatatccAACCCACACATCCCTAGGgatgtcttctgaagcaaatcgatgtgtttttgtaacaaaaaatatttctgtttgtaaaattacaacctaaggcgtataggttagttttacaacAGATATGAGTTGTTATATGAGTTATAgcgcttcaaaataatggtcacCATCCACCGGCATTAACAatcttggaagagccaggataaattttttaaaaactcaatttgtctgaaagaagaaagtcatatacacctaggacggcttgggggtgagtaaagtGTGGGGTAATTTTAGCTTTtgggcaaactattcctttaacttttttttttatccatttatttatatttttattcacttatatatttttgattactCATCTTGTTTATGGCAGGTTGTATTACGTGTAACATGTACATTTCAATTTGTTGGCGTGTAAAGGATTACATGATGTGACGTTAACCAGAAACTAGACATATTTCCCAGAACTAAGGCGGTCCACGGTTCGTGTTTGTTGATGTTTACATTTGATATCTCTGTTATgaatgttttgctttgtttcatcATGTAAGCCTTGTAATAGCTTGGTTTCCATCTTGGTTTCATTGACCAGGAATATTTCAAACAGTGCCATTTTGCTGTGACGTTCACCTTTGTAATGGTCAATAAGGCTTTTTCAGGTGTTTAACAAATGGAAGACCACAGTGGAATAAAGAGGTCTAAGccatattaaacaaaa

Function

symbol description
fbxl7 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and microtubule organizing center. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL7 (F-box and leucine rich repeat protein 7).

NR:

description
PREDICTED: F-box/LRR-repeat protein 7

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10273 FBXL7; F-box and leucine-rich repeat protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
TU238681 False 467 lncRNA 0.36 1 6063613 6064079
TU238686 False 466 TUCP 0.61 2 6066605 6086737
XM_043225599.1 True 2544 mRNA 0.51 3 6063599 6086816

Neighbor

gene id symbol gene type direction distance location
LOC122329399 fbxl7,LOC107653805,LOC107714010,LOC107566917,LOC107718179,LOC107722558,LOC107689422,LOC107688519 coding downstream 3061 6051285 ~ 6060538 (-)
rmdn1 rmdn1,LOC107678485,LOC107729932,LOC107668150,LOC107756855,LOC107735575 coding downstream 49848 6010738 ~ 6013751 (-)
pigm pigm,LOC107573292,LOC107572623 coding downstream 67936 5991972 ~ 5995663 (-)
hus1 hus1,zgc:162895 coding downstream 139481 5921492 ~ 5924118 (-)
LOC122329919 nebl,LOC107572611,LOC107698708,LOC107756860 coding downstream 144634 5909483 ~ 5918965 (-)
LOC122330271 pard3,LOC107690576,LOC107557790,LOC107749111 coding upstream 6201 6093017 ~ 6097430 (-)
LOC122329460 LOC107570661,LOC107705132 coding upstream 83379 6170195 ~ 6230395 (-)
vopp1 vopp1,LOC107728740,LOC107757191,LOC107693470 coding upstream 399715 6486531 ~ 6506257 (-)
napga napg,napga,LOC107655688,LOC107734322,LOC108431250,LOC108271818,LOC107653787 coding upstream 978443 7065259 ~ 7071527 (-)
cdk13 LOC107653808,LOC107713640,LOC107655698,LOC107734321 coding upstream 985636 7072452 ~ 7088200 (-)
G161146 NA non-coding downstream 47806 6015215 ~ 6015793 (-)
G161140 snx16 non-coding downstream 61019 5998292 ~ 6002580 (-)
G161076 epb41l3,LOC107728994,LOC107698703,LOC108432756 non-coding downstream 254956 5690585 ~ 5808643 (-)
G161093 NA non-coding downstream 269341 5792609 ~ 5794258 (-)
G161064 NA non-coding downstream 328469 5687217 ~ 5735130 (-)
G161191 NA non-coding upstream 219450 6306266 ~ 6307192 (-)
G161193 NA non-coding upstream 221785 6308601 ~ 6308962 (-)
G161184 NA non-coding upstream 222973 6309789 ~ 6311843 (-)
G161228 reck,LOC107757182 non-coding upstream 314608 6401424 ~ 6404937 (-)
G161229 NA non-coding upstream 316684 6403500 ~ 6446582 (-)
G161139 NA other downstream 66909 5996101 ~ 5996690 (-)
rheb rheb,LOC106579659,LOC107653878,LOC106590380 other downstream 640531 5372155 ~ 5423068 (-)
LOC122329620 LOC107711609,LOC107569850,LOC107554368,LOC107560358,LOC107568663 other downstream 773177 5287164 ~ 5290422 (-)
ttc21a LOC107713329,LOC107554359 other downstream 1150097 4897012 ~ 4913502 (-)
LOC122329978 LOC106514910,LOC102208621,LOC108261464,LOC105941235,LOC108229141,LOC107687159,LOC108436088,LOC108436074 other downstream 1232872 4829539 ~ 4830727 (-)
LOC122330195 pard3,LOC107713921,LOC107734328,LOC107692754,LOC108431315 other upstream 13928 6100744 ~ 6120917 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other upstream 309355 6396171 ~ 6470101 (-)
G161327 LOC107713878 other upstream 858370 6945186 ~ 7005408 (-)
ralaa ralaa,rala,LOC107565693,LOC103042957,LOC108268083,LOC101477841,LOC107655676 other upstream 1003698 7090514 ~ 7096839 (-)
pard3aa pard3,LOC107713921,LOC107734328,LOC108431315,LOC107692754 other upstream 1303279 7390095 ~ 7838521 (-)

Expression


Co-expression Network