LOC122329399 (fbxl7,LOC107653805,LOC107714010,LOC107566917,LOC107718179,LOC107722558,LOC107689422,LOC107688519)


Basic Information

Item Value
gene id LOC122329399
gene name fbxl7,LOC107653805,LOC107714010,LOC107566917,LOC107718179,LOC107722558,LOC107689422,LOC107688519
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 6051285 ~ 6060538 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225600.1
TGCAATATCATAGCGTGTTCCTGTATTTCTCTCTATTCCTTTCCTGTCTGCTTTTCTGTTTCCCCCTCTTCCCAGACTCGGACCTTAGCATGCGAACAGTGAGTACACCAAGTCCGGCTCTGATTTTGCCGCCTCGTTCATCTCCAGGCGTGCTTAATGGCTCCTCCACGTCTTCCTCCACGTTCGGCACGGAAACCATCGCCATGGTCCACACGCCGCCCGCTTCCCTCTCCCATCCGCAAAGGAGCCTGCGACAGCCGAGGGACCAGCAGGGGGCGCCCATCGACATCCTTCCTGACCATGCTTTCTTGCAGATCTTCACCCATCTGCCCACCAACCAGCTGTGTCGGTGCGCCCGTGTCTGCCGCCGCTGGTACAACTTGGCGTGGGACCCGCGCTTATGGAGGACTATTCGTCTGACGGGAGACGTGCTACATGTAGACCGCGCGCTTCGGGTTCTCACTCGCAGACTGTGCCAGGACACCCCGAACGTGTGTCTCACCCTGGAGACGGTGATGGTGAGCGGCTGTCGGAGGTTGACCGATCGAGGACTGTACACTGTGGCTCAGTGCTGCCCGGAACTGCGTCGCTTAGAGGTGGCCGGCTGCTACAACGTGTCCAATGAGGCCGTGTTCGAGGTGGTGTCACGCTGCCCCAACCTGGAACACCTGGATGTTTCAGGCTGCCCTAAAGTGACCTGCATCAGCCTGACGGAGGAGGCGTCTCTACAGCTCACACCTCTTCATGGACAGCAGATTGGCCTGCAGTATCTGGACATGACGGACTGTTTATCACTGGAGGACGAAGGCTTGAGGACCATTGCGTTTCATTGTCCTCGTCTCACGCACCTGTACCTGCGGCGCTGCAGCCGGCTAACAGACGAGGCCCTGCGACAGCTAGCACTGCACTGCTCTGCTTTACGCGAGCTCAGCCTCAGCGACTGCCATCTGATCGGAGACTTTGGCTTACGTGAGGTTGCTCGCCTCGAGGGCCATCTACGCTATCTGAGCGTGGCTCACTGTATGCGCATAACAGACGTTGGGCTGCGTTACGTAGCTCGCTACTGTCCGCGGCTCCGCTACCTGAATGCACGGGGGTGCGAGGGGCTAACGGACCAGGGTTTGAGCCACTTAGCTCGCAACTGCCCCCGAATGCGGTCTGTAGATGTTGGCCGCTGCCCGCTGGTGTCGGACGCCGGGCTGGAGGTGCTAGCACGTTGCTGCGAAGGCCTACGAAGGCTGAGTCTGAGGGGCTGTGAGAGTTTGACAGGGAGAGGGCTCATGGCGCTAGCAGCGGGATGTCCCGAGCTGCAGTTACTAAACGTACAGGAGTGTGAGGTGCCACCTGAGGCCCTTCGACTGGTCCGACAGCACTGCAGACGCTGTGTAATCGAACACACCATACCTGCTTTCTACTGAGGGAGCAGGTTGGGGACGCCGGAGGTGTCGACCTCTGAAAAACAGGTGTTTATACTTTTTGCATTCCTACGACTGCCTGATGAGAGGCAACGATGTGGATGTGTCTCAAAACCTAGTGCAGAGTCTTTCCTTGCATTCTTTCCTTTCATCCCGGAGGGTGGAAGGAGCTAAGATGCAAGGAAAGAAACTGAGGAAAGGAAACAAGGATGCACAAATTAGAATTGATATGATGTGTTAGCGCCAACACACCTGACCGAAAATAATCTATTAATCCTGACTCTAAttggttggagctaaactctagAAGACAGAGGGCTCCGAGGAACAGCACTGTTGCTGTTTCCTAACCCTATTCCTGGAGGcagacacacagaaaacatttatccatttatcaATCCAATTCAAGTCTAGGGGTCTCTATTATCAAGCAGATGAATTAGATGAGTAATTATGAAGAGTTAAGAAAAAATGGTACTGCATCTTCACAAAAAGATTTGGAAAACAATCCGACTGAAATTCTGGAGCAGGGGTGTCAAACCCTGGGTTAAGCCACAACACATCTTTCCAGATATTTCTTGTAATCCTAAAGACCTTGGTTAGCTTGTGTTTAAAGAAGAAGAGATCACACCTACTGCAGAGTTTTATAAACCTTTAGCTGGAGGCAACATGTTGGATGTCTTCTTTATCTGACAGTTTgtactaatgagctgatgagttGAATCAACTATGTCTGTTTAGGATGAGTTAGCAGATGAGTCTCCATGAAATGGATTGGGAAACACTAGTCTTCTGCCTTCTGAAACTCTGGGGCAAATCATTAGTATCAAACCTCACCTGCAGAGTTTAACATTCCTGCCCAGAAGCTTCTAGTGATCttaaagaccttgattagtttgttcaaatgtatgtattttgggTTGGATCTCACCACTCACTATCTCCTGCATTGTTTTCCTACCTTGTTCCCAGAGGCACACCGATAGTCTACATTTTTGACGTCTTCCTTATCTGACCTGACCTGTTTCATTTCTGGGAGTCTCTACCAGTGTTGAGGTGCATTTGATTAGGAAGAGTTGAAAAATGTGTACTGTTTGGGAAACACTGGTGTCCTTCCAACTGAAATTCTGAAGCAACTCGATGTCAAACCCTGCTCCTGGAGGATCACTGTTCTGCAGGGTTTAGCTCCAACTCACCTGCCAGGAATGTTCTAGTGATACTAAATATCATGACAAGCTTTTTCAGATGTGTTTAATTCAGGAGATAAACTTTACTGGAAGGTAGCCCTCCGGGAGCAGGATAAAACACACCTCTGTTGAAAAATCCATCCTATCCTGGTTATacatgttttgaagcatggctgcTTGGTTTgaactggtttaagctggtaAAATGGCCATGAGATGGCTTAATCTGGTCATGTGGTGGTAATGAGCTGGGTGgagctacactgtaaaaaaaaattagcaaaacTGGTAGATATGGTTGCCGGAATTCAACCGCAAAAAAAAACGGTAACGTTTTaggttttacattaaatttacagttaaattatttaaataacagttaagtaatttcattaactgataaaatgttaatataccaacccattaaagtactgaaatctgttttaaatacaCTGATAGACACCAAAtacaggtggtgatgagaaagtcacatgatgaaccagaGCCCATTCACAAGCAGCAACAAATTCacacaaaatttgaaatgcaatgcaggggaTTCTGGGAATGGCAGTTTTTTGGGAATGGCAAGGTTTTACCTGTAAAATGTACAggaattgaaatatttaacaggtttttactatagcattcatggtcattttttacagtgcagctCATGACTAGCTAAGAACTCTCTTAAACCAGCTCACAACCATCTTGAAAGAGACATATCgtaaaaaggtaaaaagacTTTTCCAGGTTTTCAGTGCTATAATCCGACTCTTACCAACcaaggaaatgtgaaaaagattaATCCAGTAACTTTGTTTTGGTAAGTCTTTTTCTGCAAGCCTCTAAAAAAACAATCATGTCTGCCTTTGCTCCCTCACCGACGTTGAAAAGGGATCTTATTGTAATATTACCTCCCCTTAATCTGTAAGTTTCCACCCACAGCACCATCATTTAGATTTTGCAAGCGACAACAGTGTACAGTACCAGTTTTAATGCCATGGTGAAAGTTTGAGCAAGACACACTAACTGTTCTAGATTTAGACAATATGTCTCAAGCTCAAACCCGTAGCCATGCTTCataacatacctaaccagcacaTGCTAGGACCTGACCTAGTGAGTTTCCTTGTCCCTGGAGGGACACCAACAGCGTGCATTTTGGATATGTCCCTTATCTGACTCATGAATTTGAAGTCTTAGAGTTAATGAGTATCAACTGTGCTCCACTAACAGGCCTGGGAAACACTGGCCTCCTGGTGCTACCTCGAGCACTTACATGCACACTTATCAGTAGCGTGTCAAAGGAAGATCATTAGATTTTGAGACACATCTTGTGTGCAATGTTGCTTCTTGCAGAGCTGTACCATGCTCTTTGTAATTAAAAACTACATGACATATAGCATAATATTTATCACATGAAAGAGATGCATTATATTGTCACTGTACGTCACTAGTAAGCTGGTGTCTTctgaattatgtttattttgggtTGCGTTTTCTACAAAAGCTCTTTGGCTTGTCATCCAGAGTCCGTCTATTACAGTACTTTTGATAACATACTATTACTACTTGCTTTTTAAGTAGTGATTAAGATTTTTCTCTTTGGGCGAACTATTCGTGAAGTAAAACTGATATCTGCTTTCAAGAGACCATCTTGgttcaaaataaatagaaaaatatggGCATTTGCACTTTAAAGGGCATTACTGACAGAATCTCAAAATGATCTAAAAGTCTTAAGTCTTTTATCCCAGATAACGCTAGTCAAGGATTACGTGAGATTTGTAAAGGTTTCATTTTGTGAAAGCAATATGTTGCTGCTAAAAACACTCAATAAAGGgctacttatttaaaa

Function

symbol description
fbxl7 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and microtubule organizing center. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL7 (F-box and leucine rich repeat protein 7).

NR:

description
PREDICTED: F-box/LRR-repeat protein 7-like

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K03360 GRR1; F-box and leucine-rich repeat protein GRR1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225600.1 True 4469 mRNA 0.45 2 6051285 6060538

Neighbor

gene id symbol gene type direction distance location
rmdn1 rmdn1,LOC107678485,LOC107729932,LOC107668150,LOC107756855,LOC107735575 coding downstream 37534 6010738 ~ 6013751 (-)
pigm pigm,LOC107573292,LOC107572623 coding downstream 55622 5991972 ~ 5995663 (-)
hus1 hus1,zgc:162895 coding downstream 127167 5921492 ~ 5924118 (-)
LOC122329919 nebl,LOC107572611,LOC107698708,LOC107756860 coding downstream 132320 5909483 ~ 5918965 (-)
LOC122329918 nebl,LOC108250945,LOC106903449 coding downstream 143604 5879970 ~ 5907681 (-)
LOC122330271 pard3,LOC107690576,LOC107557790,LOC107749111 coding upstream 32479 6093017 ~ 6097430 (-)
LOC122329460 LOC107570661,LOC107705132 coding upstream 109657 6170195 ~ 6230395 (-)
vopp1 vopp1,LOC107728740,LOC107757191,LOC107693470 coding upstream 425993 6486531 ~ 6506257 (-)
napga napg,napga,LOC107655688,LOC107734322,LOC108431250,LOC108271818,LOC107653787 coding upstream 1004721 7065259 ~ 7071527 (-)
cdk13 LOC107653808,LOC107713640,LOC107655698,LOC107734321 coding upstream 1011914 7072452 ~ 7088200 (-)
G161146 NA non-coding downstream 35492 6015215 ~ 6015793 (-)
G161140 snx16 non-coding downstream 48705 5998292 ~ 6002580 (-)
G161093 NA non-coding downstream 257027 5792609 ~ 5794258 (-)
G161088 NA non-coding downstream 322670 5727559 ~ 5728615 (-)
G161068 NA non-coding downstream 344787 5705767 ~ 5706498 (-)
G161191 NA non-coding upstream 245728 6306266 ~ 6307192 (-)
G161193 NA non-coding upstream 248063 6308601 ~ 6308962 (-)
G161184 NA non-coding upstream 249251 6309789 ~ 6311843 (-)
G161228 reck,LOC107757182 non-coding upstream 340886 6401424 ~ 6404937 (-)
G161229 NA non-coding upstream 342962 6403500 ~ 6446582 (-)
G161139 NA other downstream 54595 5996101 ~ 5996690 (-)
rheb rheb,LOC106579659,LOC107653878,LOC106590380 other downstream 628217 5372155 ~ 5423068 (-)
LOC122329620 LOC107711609,LOC107569850,LOC107554368,LOC107560358,LOC107568663 other downstream 760863 5287164 ~ 5290422 (-)
ttc21a LOC107713329,LOC107554359 other downstream 1137783 4897012 ~ 4913502 (-)
LOC122329978 LOC106514910,LOC102208621,LOC108261464,LOC105941235,LOC108229141,LOC107687159,LOC108436088,LOC108436074 other downstream 1220558 4829539 ~ 4830727 (-)
LOC122329398 fbxl7,LOC107718179,LOC107689422,LOC107589836,LOC107688519,LOC107722558,LOC107585539,LOC107653805,LOC107714010,LOC107566917,LOC107734313,LOC107565690,LOC107655697 other upstream 3061 6063599 ~ 6086816 (-)
LOC122330195 pard3,LOC107713921,LOC107734328,LOC107692754,LOC108431315 other upstream 40206 6100744 ~ 6120917 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other upstream 335633 6396171 ~ 6470101 (-)
G161327 LOC107713878 other upstream 884648 6945186 ~ 7005408 (-)
ralaa ralaa,rala,LOC107565693,LOC103042957,LOC108268083,LOC101477841,LOC107655676 other upstream 1029976 7090514 ~ 7096839 (-)

Expression


Co-expression Network