idi1 (idi1,LOC107600144,LOC107683492,LOC107734386,LOC107713854,LOC107588045)


Basic Information

Item Value
gene id idi1
gene name idi1,LOC107600144,LOC107683492,LOC107734386,LOC107713854,LOC107588045
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 8495872 ~ 8499322 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225798.1
CTAGAGGAAtgttgaccaatcagaatacAGCTTCGCCCCCAACAACCAATCACAAACGTGACATGAAACGCCATTAGTGGGCGGAAATCGTTCTGATCGTCAAGAGTTGATCCGTTGCTTTAGCGCTGCAAGCGTGTTTATGACCGTGACCCTCGCGTTATAAAGACCCGAGCGTCGGCACTCCAGCAGCGTGAGCCTGTGAAGCGCTGTTTTATCGTTGAGTGTCGCGCAAAAGCGCGGCGGCGCGTGGTGCGATGGCGTGTTGGTAGAGCCAGAGCGTGATTGGTCCGTGCAGAGTGCGCCTATGGCGCGGTCCTTATGGGCGGTGCGCAGATCAGCTGCCGCGCTGCTCGCCGGAGTAAATAAACCCGCAGCTCGAGCTCGAACCCTGCGTCTACCGGCTCCTCAGCGCGCGCTTCTCCTCAGcgGGGTCAGACTGCTCAGTTCACCTGTAAGGATGCCAGAGATTAACATGGATAATCTGGATGAGAAGCAAGTGCAGTTGCTGGCGGAAATGTGCATCCTCATCGACGACAAGGACAGAAAGATCGGAGCAGAGAGCAAGAAAAACTGCCATCTCAACTCGAATATCGATAAAGGATTATTGCACAGAGCGTTCAGTGTTTTCCTGTTTAACAGCGAGGAAAAGCTTCTCCTTCAGCAGAGATCCAATGCCAAAATCACCTTTCCAGgctgTTTTACCAACACTTGCTGCAGTCACCCCCTTCACGCCGTCGGTGAACTGGAGGAGCAGGATGCCATCGGGGTCCGACGGGCCGCTCAGAGACGCCTGCAAGCCGAGCTCGGCATTCCCACCAATCAGGTGCCTCCGGAAGAGATGACCTACCTGACCCGCATCCACTACAAAGCCCAGTCCGACGGCATCTGGGGCGAGCACGAGATCGACTACATCCTCTTCATGCAGAAAGACGTGGATCTGAACCCAGACCCCAACGAGATCCAGAGCCACTGCTACGTGTCCAAAGAGGAGCTGAAGGAGATCCTGGAGAAAGCCAAGAGAAAAGAGCTGGAGATCACGCCTTGGTTCGGCCTGATCGCAGAAACCTTCCTCTTCAAGTGGTGGGATAACCTCCACAACCTCAAACAGTTCATCGACCACGACAGGATCCACCGCATGTAAGCCACGTCTCAAAAGGACCCTTTAGTCGCTAATGGACGCTTAAACGGTTAATAAAAAGACTTCACGGTTTGGACAGGACGGACTCGTCTTACTGTTAGTAAATGTTTGGACAAGCAGGGATCCTATTTCGTGTTGAGTTCTGATAGAACCTGAATCCACTTTTCAACCAAACGTTTGctctcttcctgtctgaggGTTGTGCGAAGTGCCTAGTTTCACATGAGAGGCCGTGCTTTTGAAAGATTGTTTTGTGTAGATAAAACTATGAGGTTTACAGTCACGTAAAGTAATTATTAaagaagtgaaataaaa

Function

symbol description
idi1 Predicted to enable isopentenyl-diphosphate delta-isomerase activity. Predicted to be involved in isopentenyl diphosphate biosynthetic process. Predicted to act upstream of or within isoprenoid biosynthetic process. Predicted to be active in cytoplasm. Orthologous to several human genes including IDI1 (isopentenyl-diphosphate delta isomerase 1).

NR:

description
isopentenyl-diphosphate Delta-isomerase 1

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0004452 isopentenyl-diphosphate delta-isomerase activity molecular_function

KEGG:

id description
K01823 idi, IDI; isopentenyl-diphosphate Delta-isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225798.1 True 1453 mRNA 0.52 5 8495872 8499322

Neighbor

gene id symbol gene type direction distance location
slc35g2b slc35g2b,slc35g2,LOC107588046,LOC107687509,LOC107714021,LOC107683493,LOC103026733 coding downstream 32372 8458635 ~ 8463500 (-)
nck1b nck1b,nck1,LOC107683484,LOC107600141,LOC107713805,LOC107588047,LOC107734380 coding downstream 40747 8423892 ~ 8455125 (-)
sugct sugct,LOC107687505,LOC107713787,LOC106590081 coding downstream 95457 8311224 ~ 8400415 (-)
LOC122329481 LOC107593121,LOC107713971 coding downstream 268949 8216466 ~ 8226923 (-)
nrn1a nrn1a,nrn1,LOC107734388,LOC107713755,LOC105890828,LOC106590090 coding downstream 282487 8207535 ~ 8213385 (-)
adarb2 adarb2,LOC107713870,LOC107734387,LOC107683482,LOC107687536 coding upstream 30786 8530108 ~ 8669130 (-)
klf6a klf6a,klf6,LOC107717335,LOC107687512,LOC107739128,LOC107663727 coding upstream 374184 8873506 ~ 8880132 (-)
fzd8a fzd8a,fzd8,LOC107739125,LOC107717597 coding upstream 553463 9052785 ~ 9055405 (-)
cpb1 cpb1,LOC107687549 coding upstream 719502 9218824 ~ 9223818 (-)
agtr1b agtr1b,LOC107681633,LOC107588039,LOC107739124,LOC107717774,LOC107557561,LOC107663725 coding upstream 724690 9224012 ~ 9233947 (-)
G161671 NA non-coding downstream 18819 8476719 ~ 8477053 (-)
G161670 NA non-coding downstream 19397 8476173 ~ 8476475 (-)
G161668 NA non-coding downstream 21165 8474490 ~ 8474707 (-)
G161661 NA non-coding downstream 131881 8363510 ~ 8363991 (-)
G161603 NA non-coding downstream 289204 8203945 ~ 8206668 (-)
G161687 NA non-coding upstream 34646 8533968 ~ 8534191 (-)
G161725 pfkpa,LOC107687511,LOC107588098,LOC107716838 non-coding upstream 294579 8793901 ~ 8795837 (-)
G161734 NA non-coding upstream 387626 8886948 ~ 8887214 (-)
G161737 NA non-coding upstream 393826 8893148 ~ 8893367 (-)
G161751 NA non-coding upstream 531896 9031218 ~ 9034283 (-)
LOC122330139 lyrm4,LOC107692762,LOC107570464,LOC107653796,LOC107713738 other downstream 412942 8038747 ~ 8082930 (-)
pard3aa pard3,LOC107713921,LOC107734328,LOC108431315,LOC107692754 other downstream 657351 7390095 ~ 7838521 (-)
ralaa ralaa,rala,LOC107565693,LOC103042957,LOC108268083,LOC101477841,LOC107655676 other downstream 1399033 7090514 ~ 7096839 (-)
G161327 LOC107713878 other downstream 1490464 6945186 ~ 7005408 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other downstream 2025771 6396171 ~ 6470101 (-)
G161893 LOC107563058 other upstream 1431973 9931295 ~ 9932802 (-)
G161992 NA other upstream 1781475 10280797 ~ 10286608 (-)
myo3a myo3a,LOC107687530,LOC107675224,LOC107739129,LOC107758395,LOC107570047 other upstream 1866851 10366173 ~ 10436463 (-)
zgc:174877 zgc:174877,LOC107687531,LOC107709772,LOC107588023 other upstream 1952237 10451559 ~ 10458476 (-)
dpp6a dpp6a,dpp6,LOC107755713,LOC107664663,LOC107655790 other upstream 2167189 10666511 ~ 11010248 (-)

Expression


Co-expression Network