hus1 (hus1,zgc:162895)


Basic Information

Item Value
gene id hus1
gene name hus1,zgc:162895
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 5921492 ~ 5924118 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225824.1
TTCCAGACGGAAGCTGTTTCTGGACCGCTGGCGCGAAAACACATGAACGTCAACAAAACTTAGCAGAGTATTTAAATAACACGTTTATTGCAGCAAAATGAAGTTTCGAGCCAAAATCATCGATGTCGGATGTTTGAATCACTTCACACGTGTGGTGAACACTGTGTCCCGGCTGACGAAGGTGTGTGTCCTGCGGCTGACCGGTGATCACCTGTTCTTCGTTCTGTCGGGGCGTGTGGCGACCGGAGGAGTCAGTATGTGGTGTGAGCTCTCACAGGGGAACTTCTTCGATGAATTCCAGCTGGAGGGAGTGTCTGCCGACGCCAACGAGATCTTTCTGGAAGTGGCTCCGGAGAATCTTTCCAGGGCCTTAAAAACGGCGCAGAACGCTAAATCTGTCAAAATCAAGCTGACTAAGAAGAGCTGCCCGTGTCTGACACTCGCCGCTGAGCTGCCGTCTCTGTCCAGCGTCAGTCGTGTGGTCACTCATGATATCCCAGTGGACGTGATTCCCAGACGACTCTGGCATGATTTCAGAGAGCCGCAGATGCCAGACTTTGACGTCAGCATTTATTTACCTCCTCTGAAGACCATGAAGAGCGTGGTGGACCGCATGAAGAACCTCTCCAACTATCTGGTGCTGGAGGCTAATCTGAACGGAGAGATGAACCTGAAGATCGACACGGACCTGGTTTCTGTCACAACACACTTTAAAGATCTGGGAAACCCTCCGTGGGGTGATGACGTTTCTCAAAGCTCCAGTCCGACTCATAGAGATCCAGATCTCATGGCAGAAGTGCGCGTGGACATCAGGAAACTCCAGCAGTTCCTGACCGGACAGCAGGTCAATCCCAGCAGAGCCATGTGTAACATTGTTCACCAAAGGATTCTTCACCTGATCTTTCTGCACGAGGACGTGTCTCTTCAGTATTTTATTCCAGCTGTGGTGTGACGTCAGACTCACATTCTCCATCTACATTCAGaatatctgaaaaatatttcgtcgttgttgtttgttttatttaaaaatgcttctgtttatgtaaatgtgtacatatatgaataaaattttttgttCCTTTAA
>XM_043225825.1
TTCCAGACGGAAGCTGTTTCTGGACCGCTGGCGCGAAAACACATGAACGTCAACAAAACTTAGCAGAGTATTTAAATAACACGTTTATTGCAGCAAAATGAAGTTTCGAGCCAAAATCATCGATGTCGGATGTTTGAATCACTTCACACGTGTGGTGAACACTGTGTCCCGGCTGACGAAGGTGTGTGTCCTGCGGCTGACCGGTGATCACCTGTTCTTCGTTCTGTCGGGGCGTGTGGCGACCGGAGGAGTCAGTATGTGGTGTGAGCTCTCACAGGGGAACTTCTTCGATGAATTCCAGCTGGAGGGAGTGTCTGCCGACGCCAACGAGATCTTTCTGGAAGTGGCTCCGGAGAATCTTTCCAGGGCCTTAAAAACGGCGCAGAACGCTAAATCTGTCAAAATCAAGCTGACTAAGAAGAGCTGCCCGTGTCTGACACTCGCCGCTGAGCTGCCGTCTCTGTCCAGCGTCAGTCGTGTGGTCACTCATGATATCCCAGTGGACGTGATTCCCAGACGACTCTGGCATGATTTCAGAGAGCCGCAGATGCCAGACTTTGACACCATGAAGAGCGTGGTGGACCGCATGAAGAACCTCTCCAACTATCTGGTGCTGGAGGCTAATCTGAACGGAGAGATGAACCTGAAGATCGACACGGACCTGGTTTCTGTCACAACACACTTTAAAGATCTGGGAAACCCTCCGTGGGGTGATGACGTTTCTCAAAGCTCCAGTCCGACTCATAGAGATCCAGATCTCATGGCAGAAGTGCGCGTGGACATCAGGAAACTCCAGCAGTTCCTGACCGGACAGCAGGTCAATCCCAGCAGAGCCATGTGTAACATTGTTCACCAAAGGATTCTTCACCTGATCTTTCTGCACGAGGACGTGTCTCTTCAGTATTTTATTCCAGCTGTGGTGTGACGTCAGACTCACATTCTCCATCTACATTCAGaatatctgaaaaatatttcgtcgttgttgtttgttttatttaaaaatgcttctgtttatgtaaatgtgtacatatatgaataaaattttttgttCCTTTAA
>XM_043225826.1
TTCCAGACGGAAGCTGTTTCTGGACCGCTGGCGCGAAAACACATGAACGTCAACAAAACTTAGCAGAGTATTTAAATAACACGTTTATTGCAGCAAAATGAAGTTTCGAGCCAAAATCATCGATGTCGGATGTTTGAATCACTTCACACGTGTGGTGAACACTGTGTCCCGGCTGACGAAGGTGTGTGTCCTGCGGCTGACCGGTGATCACCTGTTCTTCGTTCTGTCGGGGCGTGTGGCGACCGGAGGAGTCAGTATGTGGTGTGAGCTCTCACAGGGGAACTTCTTCGATGAATTCCAGCTGGAGGGAGTGTCTGCCGACGCCAACGAGATCTTTCTGGAAGTGGCTCCGGAGAATCTTTCCAGGGCCTTAAAAACGGCGCAGAACGCTAAATCTGTCAAAATCAAGCTGACTAAGAAGAGCTGCCCGTGTCTGACACTCGCCGCTGAGCTGCCGTCTCTGTCCAGCGTCAGTCGTGTGGTCACTCATGATATCCCAGTGGACGTGATTCCCAGACGACTCTGGCATGATTTCAGAGAGCCGCAGATGCCAGACTTTGACGTGCTGGAGGCTAATCTGAACGGAGAGATGAACCTGAAGATCGACACGGACCTGGTTTCTGTCACAACACACTTTAAAGATCTGGGAAACCCTCCGTGGGGTGATGACGTTTCTCAAAGCTCCAGTCCGACTCATAGAGATCCAGATCTCATGGCAGAAGTGCGCGTGGACATCAGGAAACTCCAGCAGTTCCTGACCGGACAGCAGGTCAATCCCAGCAGAGCCATGTGTAACATTGTTCACCAAAGGATTCTTCACCTGATCTTTCTGCACGAGGACGTGTCTCTTCAGTATTTTATTCCAGCTGTGGTGTGACGTCAGACTCACATTCTCCATCTACATTCAGaatatctgaaaaatatttcgtcgttgttgtttgttttatttaaaaatgcttctgtttatgtaaatgtgtacatatatgaataaaattttttgttCCTTTAA

Function

symbol description
zgc:162895 Predicted to be involved in DNA integrity checkpoint signaling and DNA metabolic process. Predicted to act upstream of or within DNA damage checkpoint signaling. Predicted to be located in nucleolus. Predicted to be part of checkpoint clamp complex. Predicted to be active in site of double-strand break. Orthologous to human HUS1 (HUS1 checkpoint clamp component) and HUS1B (HUS1 checkpoint clamp component B).
hus1 Involved in DNA damage checkpoint signaling and cellular response to ionizing radiation. Located in nucleus.

NR:

description
PREDICTED: checkpoint protein HUS1 isoform X2

GO:

id name namespace
GO:0000077 DNA damage checkpoint biological_process
GO:0006281 DNA repair biological_process
GO:0030896 checkpoint clamp complex cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
K10903 HUS1; HUS1 checkpoint protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225824.1 True 1084 mRNA 0.48 8 5921492 5924118
XM_043225825.1 False 1057 mRNA 0.48 8 5921492 5924118
XM_043225826.1 False 1009 mRNA 0.48 7 5921492 5924118

Neighbor

gene id symbol gene type direction distance location
LOC122329919 nebl,LOC107572611,LOC107698708,LOC107756860 coding downstream 2527 5909483 ~ 5918965 (-)
LOC122329918 nebl,LOC108250945,LOC106903449 coding downstream 13811 5879970 ~ 5907681 (-)
ssr1 ssr1,LOC107698707,LOC107690869 coding downstream 44708 5872734 ~ 5876784 (-)
twsg1b LOC107572616,LOC106579643,LOC108432738,LOC103038715,LOC105025733 coding downstream 51402 5864517 ~ 5870090 (-)
vapa LOC107698706,LOC107728995,LOC107653890,LOC107729949 coding downstream 69229 5846533 ~ 5852263 (-)
pigm pigm,LOC107573292,LOC107572623 coding upstream 67854 5991972 ~ 5995663 (-)
rmdn1 rmdn1,LOC107678485,LOC107729932,LOC107668150,LOC107756855,LOC107735575 coding upstream 86620 6010738 ~ 6013751 (-)
LOC122329399 fbxl7,LOC107653805,LOC107714010,LOC107566917,LOC107718179,LOC107722558,LOC107689422,LOC107688519 coding upstream 127167 6051285 ~ 6060538 (-)
LOC122330271 pard3,LOC107690576,LOC107557790,LOC107749111 coding upstream 168899 6093017 ~ 6097430 (-)
LOC122329460 LOC107570661,LOC107705132 coding upstream 246077 6170195 ~ 6230395 (-)
G161076 epb41l3,LOC107728994,LOC107698703,LOC108432756 non-coding downstream 112849 5690585 ~ 5808643 (-)
G161093 NA non-coding downstream 127234 5792609 ~ 5794258 (-)
G161064 NA non-coding downstream 186362 5687217 ~ 5735130 (-)
G161088 NA non-coding downstream 192877 5727559 ~ 5728615 (-)
G161068 NA non-coding downstream 214994 5705767 ~ 5706498 (-)
G161140 snx16 non-coding upstream 74174 5998292 ~ 6002580 (-)
G161146 NA non-coding upstream 91097 6015215 ~ 6015793 (-)
G161191 NA non-coding upstream 382148 6306266 ~ 6307192 (-)
G161193 NA non-coding upstream 384483 6308601 ~ 6308962 (-)
G161184 NA non-coding upstream 385671 6309789 ~ 6311843 (-)
rheb rheb,LOC106579659,LOC107653878,LOC106590380 other downstream 498424 5372155 ~ 5423068 (-)
LOC122329620 LOC107711609,LOC107569850,LOC107554368,LOC107560358,LOC107568663 other downstream 631070 5287164 ~ 5290422 (-)
ttc21a LOC107713329,LOC107554359 other downstream 1007990 4897012 ~ 4913502 (-)
LOC122329978 LOC106514910,LOC102208621,LOC108261464,LOC105941235,LOC108229141,LOC107687159,LOC108436088,LOC108436074 other downstream 1090765 4829539 ~ 4830727 (-)
G160938 smyhc2,LOC107687159,LOC108271487,LOC108436074,LOC108436088 other downstream 1092237 4827249 ~ 4829255 (-)
G161139 NA other upstream 71983 5996101 ~ 5996690 (-)
LOC122329398 fbxl7,LOC107718179,LOC107689422,LOC107589836,LOC107688519,LOC107722558,LOC107585539,LOC107653805,LOC107714010,LOC107566917,LOC107734313,LOC107565690,LOC107655697 other upstream 139481 6063599 ~ 6086816 (-)
LOC122330195 pard3,LOC107713921,LOC107734328,LOC107692754,LOC108431315 other upstream 176626 6100744 ~ 6120917 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other upstream 472053 6396171 ~ 6470101 (-)
G161327 LOC107713878 other upstream 1021068 6945186 ~ 7005408 (-)

Expression


Co-expression Network