LOC122329620 (LOC107711609,LOC107569850,LOC107554368,LOC107560358,LOC107568663)


Basic Information

Item Value
gene id LOC122329620
gene name LOC107711609,LOC107569850,LOC107554368,LOC107560358,LOC107568663
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 5287164 ~ 5290422 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225969.1
GTTTGAAGTCGAAGTTGAAGATATGTTCAATAGTTTAGTAGTAATCTTACTGGCTGGAGTAGGAGGTCAGCAAACCTGTTAGCATGGCTGGGTTATAACTTGCTACATGTAAGATTcctataattttatacatttacatttatttatttggcagatgtttttatccaaagcttTCAGTCAttgttcaaaacattaaaagctaAGAGAGCAATATATTAAAGGAAATTAAGAGCATTTACTAAGGgaaaattgtgtgtttttagttcCTTCCTGATTTGGTTAGTTTAGAAGATAGCAGTAAGTTTATTTTGATAATCGTCAAGTCAGTCGTCAGGGCTCGTGCAAGATCTAGGAGTACATGGAGCAGGTCTTCTTGGTGGTGCCTTGCAGGCCCATTTGGACCTGGTTCTTGACCTGATGTTCATTGTAACAGCCTTCTCTGGACCTTCTTTTTTTAGGATGTCAGATATTTCACAGGAGTCGGAAACATGTTGTCATTTCTCTCAGATCATGTCTTTGATTGTCTCTCATGTGAACAAGCACTGATCTGTCTCAGACTTCGGCATTTGTCTGTGATTCTAAAAAATGAGTGAAAATCAGGGTTACAATTGAGTGGGAACTCTGCTTTAAATGCACCTTGATCAACTAGTCATGGTCTTTGTCTTTAGTAACAGGCAGGTGTGTCAAAACTAAACTCGGAAATCAGGCTCCACAGGAgcaggaaggaggagcctgttTAACTGAATCCCAGACAAACCTGTTTTACACATCTCACTCACAACCAGGAAACAGCAATCACCTGCAGTCAGGAAAAGAGGAGTTTTGAGCTGTCGTGAGTTTGTGTCTCTGTATTCATGCAGTAAAATGGCAGAAGTCACATTTTCTCAGGATGAGTTCACTTGTCCAGTGTGTCTGGATCTCCTGATGGATCCGGTGACCATCCAGTGTGGACACAGTTACTGTAAGAGCTGTATTACAGGCTTCTGGAATGATGAAGATCAGAATAAAGTCTACAGCTGTCCTCAGTGCAGACAGACCTTCAGTCCAAGACCTGCTTTAGCCATAAACACCATGCTGGCTGAACTGGTGGAGAAACTGAAGAAGACCAAACTCTCTGCTGACTGTGACGCTGGAGCTGGAGATGTTCAGTGTGACGTCTGTACTGGAAGAAAATACAGAGCCGTCAAGTCCTGTCTGATGTGTCTGGAGTCTTACTGCCAAACTCATTTTGAGCGGCATGAGGAGTTTCATTCACGTAAACCACACAAAGTGACTGAAGCCACTGAACGACTGCAGGAGATGATCTGCCAGAAACACGAGAAGATCCTTGAGGTTTTCTGTCGCACTGATCAgaagtgtatatgtgtgctgtgtacgATGGATGAACATAAAAACCACGACACTGTATCAGCAGCAGACCAGAGGACAGAGAAACAGTGTTTGCAGTCTCTCTCAGCACCTTCTGAATCTAAAGACATGAATGATGATCCCTTCAGTTCTCACATCTCTTCTGATGACCTGAGAGAATCTGTCCATCATATGAGAGATGAACTGGAGGACTTCTGCAAAGAGCAGCTTAAGAAGATCCCAGACAGAGTCACATTCAACAACATTGTTCCCAGAAGCAGGAAAGATTTCCCACAAAATTCCCATCAGTTCACTCTGGATGCGAACACAGTGAATAAATacctctgtctgtctgagaACAACAGAATGATTACTCACACTGGCACAAAGCAGctgtatcctgatcatccagacagatttgatggtttgtgtcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagctGGAGTGGAGCGGATATGGTGTGtctatatcagtgtcatataaaaGCATCCGCAGGAAGGGACGTGGTAGAGAGTGTTGGTTTGGATccaatgatcagtcctggagtttgttcTGCTCTTCCTCCAGATGCTCTTTTGGATTCAATAAGATATGGACCGATCTCCCTGTAGAGTCCATCAGCAGAAGAATAGGAGTGTTTGTGAATCACAgtgcaggaactctgtccttctacagcgtctcgGACACAATGAacctcatccacacagtccagaccacattcactcagacactctATCCTGGGTTTAACGTTTTTTCTGGATCATCAGTGgaactgtgttgatgaatcagaataGACTGACAAGAGATTCCACCAATAATGATTGGAGCAGGGGACACTTCACTATCTCAGAGTGATCTAACTGATGCTGGGATGTCACATGACAGTAACAAGATGGCGTATGTAGTACGTCTGTATTTTAATCGCACTACATATTCGTACTATACAGAATAGTTTAAAATCTAAAGTAGTACTTACTCAGTATTTAATTTCGAATGCACTGATTGATGCATCC
>XR_006247942.1
GTTTGAAGTCGAAGTTGAAGATATGTTCAATAGTTTAGTAGTAATCTTACTGGCTGGAGTAGGAGGTCAGCAAACCTGTTAGCATGGCTGGGTTATAACTTGCTACATGTAAGATTcctataattttatacatttacatttatttatttggcagatgtttttatccaaagcttTCAGTCAttgttcaaaacattaaaagctaAGAGAGCAATATATTAAAGGAAATTAAGAGCATTTACTAAGGgaaaattgtgtgtttttagttcCTTCCTGATTTGGTTAGTTTAGAAGATAGCAGTAAGTTTATTTTGATAATCGTCAAGTCAGTCGTCAGGGCTCGTGCAAGATCTAGGAGTACATGGAGCAGGTCTTCTTGGTGGTGCCTTGCAGGCCCATTTGGACCTGGTTCTTGACCTGATGTTCATTGTAACAGCCTTCTCTGGACCTTCTTTTTTTAGGATGTCAGATATTTCACAGGAGTCGGAAACATGTTGTCATTTCTCTCAGATCATGTCTTTGATTGTCTCTCATGTGAACAAGCACTGATCTGTCTCAGACTTCGGCATTTGTCTGTGATTCTAAAAAATGAGTGAAAATCAGGGTTACAATTGAGTGGGAACTCTGCTTTAAATGCACCTTGATCAACTAGTCATGGTCTTTGTCTTTAGTAACAGGCAGGTGTGTCAAAACTAAACTCGGAAATCAGGCTCCACAGGAgcaggaaggaggagcctgttTAACTGAATCCCAGACAAACCTGTTTTACACATCTCACTCACAACCAGGAAACAGCAATCACCTGCAGTCAGGAAAAGAGGAGTTTTGAGCTGTCGTGAGTTTGTGTCTCTGTATTCATGCAGTAAAATGGCAGAAGTCACATTTTCTCAGGATGAGTTCACTTGTCCAGTGTGTCTGGATCTCCTGATGGATCCGGTGACCATCCAGTGTGGACACAGTTACTGTAAGAGCTGTATTACAGGCTTCTGGAATGATGAAGATCAGAATAAAGTCTACAGCTGTCCTCAGTGCAGACAGACCTTCAGTCCAAGACCTGCTTTAGCCATAAACACCATGCTGGCTGAACTGGTGGAGAAACTGAAGAAGACCAAACTCTCTGCTGACTGTGACGCTGGAGCTGGAGATGTTCAGTGTGACGTCTGTACTGGAAGAAAATACAGAGCCGTCAAGTCCTGTCTGATGTGTCTGGAGTCTTACTGCCAAACTCATTTTGAGCGGCATGAGGAGTTTCATTCACGTAAACCACACAAAGTGACTGAAGCCACTGAACGACTGCAGGAGATGATCTGCCAGAAACACGAGAAGATCCTTGAGGTTTTCTGTCGCACTGATCAgaagtgtatatgtgtgctgtgtacgATGGATGAACATAAAAACCACGACACTGTATCAGCAGCAGACCAGAGGACAGAGAAACAGTGTTTGCAGTCTCTCTCAGCACCTTCTGAATCTAAAGACATGAATGATGATCCCTTCAGTTCTCACATCTCTTCTGATGACCTGAGAGAATCTGTCCATCATATGAGAGATGAACTGGAGGACTTCTGCAAAGAGCAGCTTAAGAAGATCCCAGACAGAGTCACATTCAACAACATTGTTCCCAGAAGCAGGAAAGATTTCCCACAAAATTCCCATCAGTTCACTCTGGATGCGAACACAGTGAATAAATacctctgtctgtctgagaACAACAGAATGATTACTCACACTGGCACAAAGCAGctgtatcctgatcatccagacagatttgatggtttgtgtcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagctGGAGTGGAGCGGATATGGTGTGtctatatcagtgtcatataaaaGCATCCGCAGGAAGGGACGTGGTAGAGAGTGTTGGTTTGGATccaatgatcagtcctggagtttgttcTGCTCTTCCTCCAGATGCTCTTTTGGATTCAATAAGATATGGACCGATCTCCCTGTAGAGTCCATCAGCAGAAGAATAGGAGTGTTTGTGAATCACAgtgcaggaactctgtccttctacagcgtctcgGACACAATGAacctcatccacacagtccagaccacattcactcagacactctATCCTGGGTTTAACGTTTTTTCTGGATCATCAGTGgaactgtgttgatgaatcagaataGACTGACAAGAGATTCCACCAATAATGATTGGAGCAGGGGACACTTCACTATCTCAGAGTGATCTAACTGATGCTGGGATGTCACATGACAGTAACAAGATGGCGTATGTAGTTGGGTCCttcttctgtgttttgtgtgttcgTGGGGGAGGCTGGAGAGCGGGACTTTTT
>XR_006247943.1
GTTTGAAGTCGAAGTTGAAGATATGTTCAATAGTTTAGTAGTAATCTTACTGGCTGGAGTAGGAGGTCAGCAAACCTGTTAGCATGGCTGGGTTATAACTTGCTACATGTAAGATTcctataattttatacatttacatttatttatttggcagatgtttttatccaaagcttTCAGTCAttgttcaaaacattaaaagctaAGAGAGCAATATATTAAAGGAAATTAAGAGCATTTACTAAGGgaaaattgtgtgtttttagttcCTTCCTGATTTGGTTAGTTTAGAAGATAGCAGTAAGTTTATTTTGATAATCGTCAAGTCAGTCGTCAGGGCTCGTGCAAGATCTAGGAGTACATGGAGCAGGTCTTCTTGGTGGTGCCTTGCAGGCCCATTTGGACCTGGTTCTTGACCTGATGTTCATTGTAACAGCCTTCTCTGGACCTTCTTTTTTTAGGATGTCAGATATTTCACAGGAGTCGGAAACATGTTGTCATTTCTCTCAGATCATGTCTTTGATTGTCTCTCATGTGAACAAGCACTGATCTGTCTCAGACTTCGGCATTTGTCTGTGATTCTAAAAAATGAGTGAAAATCAGGGTTACAATTGAGTGGGAACTCTGCTTTAAATGCACCTTGATCAACTAGTCATGGTCTTTGTCTTTAGTAACAGGCAGGTGTGTCAAAACTAAACTCGGAAATCAGGCTCCACAGGAgcaggaaggaggagcctgttTAACTGAATCCCAGACAAACCTGTTTTACACATCTCACTCACAACCAGGAAACAGCAATCACCTGCAGTCAGGAAAAGAGGAGTTTTGAGCTGTCGTGAGTTTGTGTCTCTGTATTCATGCAGTAAAATGGCAGAAGTCACATTTTCTCAGGATGAGTTCACTTGTCCAGTGTGTCTGGATCTCCTGATGGATCCGGTGACCATCCAGTGTGGACACAGTTACTGTAAGAGCTGTATTACAGGCTTCTGGAATGATGAAGATCAGAATAAAGTCTACAGCTGTCCTCAGTGCAGACAGACCTTCAGTCCAAGACCTGCTTTAGCCATAAACACCATGCTGGCTGAACTGGTGGAGAAACTGAAGAAGACCAAACTCTCTGCTGACTGTGACGCTGGAGCTGGAGATGTTCAGTGTGACGTCTGTACTGGAAGAAAATACAGAGCCGTCAAGTCCTGTCTGATGTGTCTGGAGTCTTACTGCCAAACTCATTTTGAGCGGCATGAGGAGTTTCATTCACGTAAACCACACAAAGTGACTGAAGCCACTGAACGACTGCAGGAGATGATCTGCCAGAAACACGAGAAGATCCTTGAGGTTTTCTGTCGCACTGATCAgaagtgtatatgtgtgctgtgtacgATGGATGAACATAAAAACCACGACACTGTATCAGCAGCAGACCAGAGGACAGAGAAACAGTGTTTGCAGTCTCTCTCAGCACCTTCTGAATCTAAAGACATGAATGATGATCCCTTCAGTTCTCACATCTCTTCTGATGACCTGAGAGAATCTGTCCATCATATGAGAGATGAACTGGAGGACTTCTGCAAAGAGCAGCTTAAGAAGATCCCAGACAGAGTCACATTCAACAACATTGTTCCCAGAAGCAGGAAAGATTTCCCACAAAATTCCCATCAGTTCACTCTGGATGCGAACACAGTGAATAAATacctctgtctgtctgagaACAACAGAATGATTACTCACACTGGCACAAAGCAGctgtatcctgatcatccagacagatttgatggtttgtgtcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagctGGAGTGGAGCGGATATGGTGTGtctatatcagtgtcatataaaaGCATCCGCAGGAAGGGACGTGGTAGAGAGTGTTGGTTTGGATccaatgatcagtcctggagtttgttcTGCTCTTCCTCCAGATGCTCTTTTGGATTCAATAAGATATGGACCGATCTCCCTGTAGAGTCCATCAGCAGAAGAATAGGAGTGTTTGTGAATCACAgtgcaggaactctgtccttctacagcgtctcgGACACAATGAacctcatccacacagtccagaccacattcactcagacactctATCCTGGGTTTAACGTTTTTTCTGGATCATCAGTGgaactgtgttgatgaatcagaataGACTGACAAGAGATTCCACCAATAATGATTGGAGCAGGGGACACTTCACTATCTCAGAGTGATCTAACTGATGCTGGGATGTCACATGACAGTAACAAGATGGCGTTGGGTCCttcttctgtgttttgtgtgttcgTGGGGGAGGCTGGAGAGCGGGACTTTTT

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225969.1 True 2398 mRNA 0.43 4 5287261 5290422
XR_006247942.1 False 2349 transcript 0.43 5 5287164 5290422
XR_006247943.1 False 2342 transcript 0.44 5 5287164 5290422

Neighbor

gene id symbol gene type direction distance location
LOC122329621 NA coding downstream 2 5282175 ~ 5287162 (-)
acvr2ba acvr2b,LOC107687130,LOC108436077,LOC100136506 coding downstream 14368 5238446 ~ 5272796 (-)
LOC122329444 exog coding downstream 57379 5218442 ~ 5229785 (-)
wdr48a wdr48,LOC107753054 coding downstream 351340 4920284 ~ 4935824 (-)
slc22a17 slc22a17,LOC107676813,LOC107686828,LOC107554358,LOC107713358 coding downstream 394951 4878308 ~ 4892213 (-)
LOC122329618 NA coding upstream 123 5290545 ~ 5294460 (-)
LOC122329619 LOC107557625,LOC107756192,LOC107557627,LOC107573470,LOC107717306,LOC107571437 coding upstream 4239 5294661 ~ 5303028 (-)
xylb xylb coding upstream 20568 5310990 ~ 5347205 (-)
crygn2 crygn2,crygn,LOC107744746,LOC107566923,LOC107653877 coding upstream 72467 5362889 ~ 5366112 (-)
ptprma ptprm,LOC108432749,LOC108271270,LOC106579657 coding upstream 137159 5427581 ~ 5604993 (-)
LOC122329622 NA non-coding downstream 9344 5274956 ~ 5277820 (-)
G161026 NA non-coding downstream 51343 5234921 ~ 5235821 (-)
G161024 NA non-coding downstream 52436 5232587 ~ 5234728 (-)
G161030 NA non-coding downstream 87176 5198658 ~ 5199988 (-)
G161029 NA non-coding downstream 88911 5196576 ~ 5198253 (-)
LOC122329809 NA non-coding upstream 17330 5307752 ~ 5370370 (-)
G161045 NA non-coding upstream 19559 5309981 ~ 5310500 (-)
G161035 NA non-coding upstream 28519 5318941 ~ 5363465 (-)
G161052 NA non-coding upstream 66132 5356554 ~ 5393720 (-)
G161064 NA non-coding upstream 396795 5687217 ~ 5735130 (-)
ttc21a LOC107713329,LOC107554359 other downstream 373662 4897012 ~ 4913502 (-)
LOC122329978 LOC106514910,LOC102208621,LOC108261464,LOC105941235,LOC108229141,LOC107687159,LOC108436088,LOC108436074 other downstream 456437 4829539 ~ 4830727 (-)
G160938 smyhc2,LOC107687159,LOC108271487,LOC108436074,LOC108436088 other downstream 457909 4827249 ~ 4829255 (-)
G160933 NA other downstream 488167 4679859 ~ 4798997 (-)
G160937 smyhc2,smyhc1,LOC107560368 other downstream 580193 4706440 ~ 4706971 (-)
rheb rheb,LOC106579659,LOC107653878,LOC106590380 other upstream 81733 5372155 ~ 5423068 (-)
G161139 NA other upstream 705679 5996101 ~ 5996690 (-)
LOC122329398 fbxl7,LOC107718179,LOC107689422,LOC107589836,LOC107688519,LOC107722558,LOC107585539,LOC107653805,LOC107714010,LOC107566917,LOC107734313,LOC107565690,LOC107655697 other upstream 773177 6063599 ~ 6086816 (-)
LOC122330195 pard3,LOC107713921,LOC107734328,LOC107692754,LOC108431315 other upstream 810322 6100744 ~ 6120917 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other upstream 1105749 6396171 ~ 6470101 (-)

Expression


Co-expression Network