pigm (pigm,LOC107573292,LOC107572623)


Basic Information

Item Value
gene id pigm
gene name pigm,LOC107573292,LOC107572623
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 5991972 ~ 5995663 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043226459.1
GGCTCAGGACAGGGAAGTAGGGTTTTCAGGAAGCGCGATTCCgtgttctctctctgtgtgtgtgtgtgtgtgtgaaagagagagagagagaatgagagtgagtgagagagtgtgctGTGATGGATGCTCAGCTGTGTTTGATGTTAAGCGCCGCGTTTCTCGTCCGCCTTGCGCTGATGTGTTTCGGTGTTTATCAGGATCAGAATCTGCAGCTCAAGTACACGGATGTGGATTATCACGTGTTCACCGACGCCTCCAGATTTATCCTACAGgGTCGCAGTCCCTATGACAGATCTACGTTTCGTTACACTCCTCTGCTGGCTCTGGTTCTGGCTCCAGGGGTTCTGCTGAGCTCTCTCTGTGGGAAGCTTCTGTTCGTGGGCTGTGATCTTCTGTCGGCTCTCCTGATGTTCCGGCTGCTGGTTCTGCGCGGCTCGTCCCGGAGATCGGCGAGGCTCCTCTGCGGTCTGTGGCTGTTTAACCCGCTGACCGTGGCTGTGTCCACCCGCGGGAACGCCGAGTCTCTGCTGGCCGCTCTGGTCTTGTCCTCTCTGCTGTGTCTGGAGTCCAGGAGACAGACGTCTGCAGCGCTGCTCTTCGGTCTGGCCGTCCACATGAAGATCTACCCAGTCACTTACGCGCTGCCCATCGCGCTGTCTCTGACCAGAGCGCCGTCCCGCGGCCGAGGACTGATCCGGAACCTGCTCCGGTGCATCAGTGGGGATCTGCTGCGGTTCGCGGCTGTTTCTGGAGTCGTGTTCTTCGCTCTGAACATCACCTTCTACTGCATGTACGGCTGGGTTTTCCTCCAGGAGTCTTACCTGTATCACCTGACTCGCAGAGACATCCGTCACAACTTCTCTCCGTACTTCTACATGCTGTACGTGACGGCGGAGCGTCCCTGGAGCGGCGCTCTGGCTCTCGTCTGTTTTCTGCCTCAGATGCTGCTGCTGTCTCTGGCCTCGCTGGCCTTCCGCTCCGATCTGCCCTTCTGCTGCTTCATACACACCTCCATCTTCGTCAGCTTCAACAAAGTCTGCACTTCACAGTATTTTCTGTGGTATCTGTGTCTGCTGCCGCTGGTTTTGCCTCGGCTGACTCTGAGCGGGAGACGAGGCCTggggctgctgctgctgtggttTGTGGGACAGGCGCTGTGGCTGTCCCCGGCGTATTATCTGGAGTTCGAGGGCCGGAACACTTTCACACTCATCTGGATCGCCGGGCTGCTGTTCCTCCTCATCAATTCTTTCATACTGGGACAAATCATCTCCCATTACAGACCCCCAGAAGCCCATGTGAAGAAAACAGACTGACGGACGCCTGCGAGAACACTGTCGCTTCACACACCGGATACGTGAGATGATTCAGCCGAACACTAGATGTCGCCCAACAGCAGATCTCCAGATGGACGGCACACTTCAACTGATCTCATGTTGAACAAGTGAGGGATTTCTCAACCCTTTACATTTGATGTCGCAGATGAGCTTGTAAATGATGCTTGTGTCTCTGAGGAGATTAGTGAGAGTGTGAATGAAGACGAGCCCACAGGAAGTGCTGACTGACGGGACGCAGGACGAGAACAAGCTCAGCGTTAAACAGGATTAAATCCTCTCTGCTGTGAAGCTTGAAAAATCTTCAATGTTCTggtaaacatttttgcaaaatgcTGGTCACCATTATTGAATGAACAGAAGCAGATCTGGTTATATCTCTTCTACATATAACACAGTCTTATTAAAGTGTGGAGAAGGAGAATGTGAACCAGACTATTCATAGTAAAACACGAACAGCACATGAGCATGGTCTTTTTGTCatacaagatttttatttttataaaagtaataaatataacagCAAGACCCACATTTGATTGTTGCTGCTTTGCAGCTACAAGCTTgtgtaacacattactgtatcttctgttaatatttattgcCCATATTGAATGCCAGTGGCAAAACGTCACGTTAAAATCCTTCCTGAAAAAGTGCAAAAGgccattaaacaataaatacaagtTATTGATACAAATGAACCTTCCAGAAACGGCTTGTCAGACGCGAGGACATCACGCCTCGGCAGGCTTTCTTTCGCTTAACTtttaacgtttttattatttaatacaattaaacagTAGTTTTATATAAAGTCAAAGTTACAAGCTCTAAACTTCAGAGCTGTGCTctattaaattcataaaatgtttggCATTCTTATCAATGCTGAAGTGAATTTAGCATCAAAATATTCAAGAGCCTAAATATTTAaccattatgttttatttctgggCTGCTTCAACAGTTTTTTTCCACCTCTTGGCTATTTATAGACGATATATAAGAACATTCCTGTCATTTCTCCGGCTGATATCTGAACACAAACAGATGGAATCCTTCAGTTTTTATActtctaaataattaataaacatgcagatgaaatgctttaaaaaacagCTCATAAACCGTTGATTGCAATGATATAACagaagttcattttaaatgaaataatttgaatatttgtttgtttttgtaatttgtgtgttagtagtttttatttgtccATGTTTGCTGAACAAACTGGGAAAGAAATATTAGCCTCACTACACAAAAAGTGCTTAGAAGAAAATATAATGGAAGCTCACCAAACAAAATCTTAACAACAGCGCTGCTACACTTAGAGAAAAACTTCACTGCAAGAAATGATTGTCTTAGTATCTGTGTCCTGTTTTCCTGTATAagaaactaaatgttttaataatctgcCAATCGGTTCAGCAAGAAATAACATGCTTCTTGTTagaagtatatttaaataaaggtgcctTGACTTGT

Function

symbol description
pigm Predicted to enable mannosyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of glycosylphosphatidylinositol-mannosyltransferase I complex. Orthologous to human PIGM (phosphatidylinositol glycan anchor biosynthesis class M).

NR:

description
GPI mannosyltransferase 1

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K05284 PIGM; GPI mannosyltransferase 1 subunit M

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043226459.1 True 2834 mRNA 0.45 5 5991972 5995663

Neighbor

gene id symbol gene type direction distance location
hus1 hus1,zgc:162895 coding downstream 67854 5921492 ~ 5924118 (-)
LOC122329919 nebl,LOC107572611,LOC107698708,LOC107756860 coding downstream 73007 5909483 ~ 5918965 (-)
LOC122329918 nebl,LOC108250945,LOC106903449 coding downstream 84291 5879970 ~ 5907681 (-)
ssr1 ssr1,LOC107698707,LOC107690869 coding downstream 115188 5872734 ~ 5876784 (-)
twsg1b LOC107572616,LOC106579643,LOC108432738,LOC103038715,LOC105025733 coding downstream 121882 5864517 ~ 5870090 (-)
rmdn1 rmdn1,LOC107678485,LOC107729932,LOC107668150,LOC107756855,LOC107735575 coding upstream 15075 6010738 ~ 6013751 (-)
LOC122329399 fbxl7,LOC107653805,LOC107714010,LOC107566917,LOC107718179,LOC107722558,LOC107689422,LOC107688519 coding upstream 55622 6051285 ~ 6060538 (-)
LOC122330271 pard3,LOC107690576,LOC107557790,LOC107749111 coding upstream 97354 6093017 ~ 6097430 (-)
LOC122329460 LOC107570661,LOC107705132 coding upstream 174532 6170195 ~ 6230395 (-)
vopp1 vopp1,LOC107728740,LOC107757191,LOC107693470 coding upstream 490868 6486531 ~ 6506257 (-)
G161076 epb41l3,LOC107728994,LOC107698703,LOC108432756 non-coding downstream 183329 5690585 ~ 5808643 (-)
G161093 NA non-coding downstream 197714 5792609 ~ 5794258 (-)
G161064 NA non-coding downstream 256842 5687217 ~ 5735130 (-)
G161088 NA non-coding downstream 263357 5727559 ~ 5728615 (-)
G161068 NA non-coding downstream 285474 5705767 ~ 5706498 (-)
G161140 snx16 non-coding upstream 2629 5998292 ~ 6002580 (-)
G161146 NA non-coding upstream 19552 6015215 ~ 6015793 (-)
G161191 NA non-coding upstream 310603 6306266 ~ 6307192 (-)
G161193 NA non-coding upstream 312938 6308601 ~ 6308962 (-)
G161184 NA non-coding upstream 314126 6309789 ~ 6311843 (-)
rheb rheb,LOC106579659,LOC107653878,LOC106590380 other downstream 568904 5372155 ~ 5423068 (-)
LOC122329620 LOC107711609,LOC107569850,LOC107554368,LOC107560358,LOC107568663 other downstream 701550 5287164 ~ 5290422 (-)
ttc21a LOC107713329,LOC107554359 other downstream 1078470 4897012 ~ 4913502 (-)
LOC122329978 LOC106514910,LOC102208621,LOC108261464,LOC105941235,LOC108229141,LOC107687159,LOC108436088,LOC108436074 other downstream 1161245 4829539 ~ 4830727 (-)
G160938 smyhc2,LOC107687159,LOC108271487,LOC108436074,LOC108436088 other downstream 1162717 4827249 ~ 4829255 (-)
G161139 NA other upstream 438 5996101 ~ 5996690 (-)
LOC122329398 fbxl7,LOC107718179,LOC107689422,LOC107589836,LOC107688519,LOC107722558,LOC107585539,LOC107653805,LOC107714010,LOC107566917,LOC107734313,LOC107565690,LOC107655697 other upstream 67936 6063599 ~ 6086816 (-)
LOC122330195 pard3,LOC107713921,LOC107734328,LOC107692754,LOC108431315 other upstream 105081 6100744 ~ 6120917 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other upstream 400508 6396171 ~ 6470101 (-)
G161327 LOC107713878 other upstream 949523 6945186 ~ 7005408 (-)

Expression


Co-expression Network