ccr7 (ccr7,LOC107677611,LOC107581378,LOC107740599,LOC107705525,LOC107584769,LOC107660053)


Basic Information

Item Value
gene id ccr7
gene name ccr7,LOC107677611,LOC107581378,LOC107740599,LOC107705525,LOC107584769,LOC107660053
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 4829435 ~ 4831964 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241090.1
GTGCTTCACCTTTTTAACACATCAGATGCAGAGCTCTCTCGCATTCACTGTGTTACTAACAGTCCTGGAGAAACATTCAAAGAGAAAGTGTTAAATCATGCACGCTGTTACCGTGTTTTGTCCTTTGCTGCTGATATGGTCGTGCCAAATAAAGAAAAGCTGGTCCAATGTGACTGCTGATTACAACATGGAGAACAAATCCACAACAGAGTATGAGTATTCCACAGAGACGGTGGATTACAGCGATCTTGAGTTAATGTGTGATAAAGGCTCCAACCGTTCCTTCCGCGCCTGGTTCCTGCCCACCATCTACACCGTCATCTGCCTCCTGGCCCTCATGGGAAACTTTCTGGTCATCCTCACCTACCTTTACTTCAAGAGGCTGAAGACGATGACTGACGTCTACCTGCTCAATCTGGCCATGGCTGACCTGCTGTTTGCAATTTCTCTACCTTTCTGGGCAGCTAGTTTCATGAGCAAGTGGCACTTGGGTCTGTATCCGTGCAAGGCCATGTTCACCATCTACAAGGTCAGCTTCTTCAGCGGCATGTTCCTTCTCACCTGTATCAGCGTAGATCGCTATTTCTCCATAACGAAGGCCGTCTCTGCTCATCGCTGTCGTACAAGTGCGGTCTTTTACGGACAGGTGTCTTCTCTGGTTACTTGGGTGATGGCGGTGATCTTTTCAGTACCTGACATGGTGTTCTCTGAAATCAACATCAATGGTACCTGTACGGAAAATGGCAACAACTATGAAGACTACCGCCTCAGGATGCTGGTAAGTCAGATGGTCCTGGGTTTTATACTTCCGGCCTTGATCATGGGGTTCTGTTACACCTGTATCATCAAGACCCTCATCCAAGCCAAGAACTTTGAGAGGAATAAAGCCTTCAAGGTCATCATTGCGGTGGTATCTGTCTTTGTCTTCAGTCAACTACCCTACAATGTAGTCATGGGAGTGACCGCTCAGGAAACAACGGATTGCGGTAAGGACAAGAGTCGTCTTTACGCTTTGGATGTGACCAGAGCCGTGGCCTTCTTGCGCTGCTGCATAAACCCCTTCCTGTACGCCTTCATTGGGGTAAAGTTTCGCAATGATCTCCTGAAGCTGCTGAAAGACTTGGGATGTATCAGAAAGAGCCATCTCATGTACACCCACTGCGGTAAACGAAGATCCTCTGTCGGCTTGGACACAGAAACCACAACTACGTTTTCCCCTTGAATGCTACCATCTGTTTAGGAAGAGATTCCggaacaacaaaaaagttttgcCAGTTTACTTTAGTCACATAGTGGTTAATCTCTTCATAAGCTCCATTCAGAAAAAAGTGCCTGTGGAGGAATGTATGGTGCCATGTACTAGCATGCTGCAAATTTCGCTTTGCAGCATTACTAGGGACTTATTGTACAAAAACTTCCTTCTTTGTAACAATTTTCACTTCTCGTTTTTGATTGCTCTTTGAGAAATGTCTGTCACTCTTTGTTATATGATGTAGCCAGTTTGTGTTCAATATATCGTtctctatataaatacaatgtatattacacatgctttcaaaaatgTGACATCTTTATTGCTAACTATGAACTAAgtttctcaaataaataaaaattttcta

Function

symbol description
ccr7 Enables G protein-coupled receptor activity. Acts upstream of or within dorsal/ventral pattern formation and negative regulation of canonical Wnt signaling pathway. Predicted to be located in early endosome and membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in brain; gill; intestine; and kidney. Orthologous to human CCR7 (C-C motif chemokine receptor 7).

NR:

description
PREDICTED: C-C chemokine receptor type 7

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0042119 neutrophil activation biological_process
GO:0006935 chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016493 C-C chemokine receptor activity molecular_function
GO:0016494 C-X-C chemokine receptor activity molecular_function

KEGG:

id description
K04182 CCR7, CD197; C-C chemokine receptor type 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241090.1 True 1619 mRNA 0.44 3 4829435 4831964

Neighbor

gene id symbol gene type direction distance location
nfe2l2b LOC107740600,LOC107677604 coding downstream 9964 4812355 ~ 4819471 (-)
lnpk lnpb,LOC107740586,LOC107677603,LOC107581375,LOC107705573,LOC107660049 coding downstream 25563 4796718 ~ 4803872 (-)
atp5mc3b atp5g3b,LOC107581374,LOC107677599,LOC107705563,LOC107740588,LOC107584774,LOC107660047,LOC108430874,LOC103042584 coding downstream 33246 4794040 ~ 4796189 (-)
chrna1 chrna1,LOC106595477 coding downstream 36178 4788519 ~ 4793257 (-)
wipf1b wipf1b,LOC107740590,LOC107677587,LOC107581373,LOC107705551,LOC107660046,LOC107584775 coding downstream 41609 4774901 ~ 4787826 (-)
notum2 LOC107677565,LOC107581444,LOC107705526,LOC107660052,LOC107584829 coding upstream 3003 4834967 ~ 4841155 (-)
coq7 coq7,LOC107677563,LOC107740598,LOC107581445,LOC107705527 coding upstream 16914 4848878 ~ 4850924 (-)
pttg1ipa pttg1ipa,LOC107677570,LOC107740579,LOC107660056,LOC107581447 coding upstream 55575 4887539 ~ 4891669 (-)
myo10l1 myo10l1,LOC107581381,LOC107740578,LOC107705496,LOC107677542,LOC108430864,LOC108272349 coding upstream 62128 4894092 ~ 4938243 (-)
trnak-uuu_105 NA coding upstream 123582 4955546 ~ 4955618 (-)
G42644 LOC101169590,LOC106917580,LOC108430882 non-coding downstream 124932 4698903 ~ 4704503 (-)
G42614 NA non-coding downstream 323768 4503734 ~ 4505667 (-)
G42615 NA non-coding downstream 326229 4502720 ~ 4503206 (-)
G42606 abi2 non-coding downstream 354643 4473919 ~ 4474792 (-)
G42586 NA non-coding downstream 397108 4430558 ~ 4432327 (-)
LOC122346990 NA non-coding upstream 35163 4867127 ~ 4881393 (-)
G42955 baz2b,LOC107677545 non-coding upstream 301838 5133802 ~ 5228971 (-)
G42960 LOC107584764,LOC107677591,LOC107743335 non-coding upstream 307435 5139399 ~ 5238937 (-)
G42956 NA non-coding upstream 327380 5159344 ~ 5173432 (-)
G42969 NA non-coding upstream 339232 5171196 ~ 5172061 (-)
LOC122347558 cycsb,LOC103040542,LOC108273362,LOC108430847 other downstream 3969 4818191 ~ 4825466 (-)
gpr155b gpr155b,LOC107740589,LOC107581372,LOC107584777,LOC107705544,LOC107677583,LOC107660045 other downstream 54889 4766381 ~ 4774546 (-)
dnah9l dnah11,LOC107581427,LOC107677540,LOC108430841,LOC108272446,LOC103372266,LOC104955736,LOC107740597,LOC102781332,LOC107384434 other downstream 90893 4709290 ~ 4738542 (-)
nudt15 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 other downstream 332017 4493912 ~ 4497418 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other downstream 414222 4394407 ~ 4415213 (-)
sumo3a sumo3a,sumo3b,LOC103392195,LOC107668404,LOC108430868 other upstream 50823 4882787 ~ 4886349 (-)
G42958 LOC107742327 other upstream 397492 5229456 ~ 5230710 (-)
adam23a adam23,adam23a,LOC107748557,LOC107705602,LOC107660086,LOC107688856 other upstream 790722 5622686 ~ 5639926 (-)
arl6ip6 LOC107688850,LOC107748576,LOC107705609,LOC107660093,LOC107566311,LOC107555419 other upstream 859517 5691481 ~ 5699650 (-)
mylkb mylkb,LOC107688847,LOC107748549,LOC107555454,LOC107705608,LOC107566310,LOC107660138 other upstream 891504 5723468 ~ 5736620 (-)

Expression


Co-expression Network