polr3gl (polr3gl,LOC107714326,LOC107666760,LOC107592290)


Basic Information

Item Value
gene id polr3gl
gene name polr3gl,LOC107714326,LOC107666760,LOC107592290
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12623845 ~ 12633606 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237733.3
CATTTCTGAGCGCAACGCGGCGGAGATGCGTTTGTTTACATGGAGTTTGGCGGGGAATTTCTCTTCATATCTGAATCGATCTGTTTTCATTAAAGCAGAGCAATAATAAGAGTCTGACCCGCGTTAATAGATTAATAACGGGGTTTAATTCTAACCAGACGAAATACGGCAGCGCAGTATCTTTAGCATGTTGCTAAATGAGATCTGTTAAGCTGTTTTGTGTGAGTTTACTCCTCCTGGGTTTGGTTATTTCTTGAGTTGAGTTTGTATCGCTagataaaaaaatcatgttgtGTCCAAAAGTGCAGGAAACACCAGTTAGTTTAATGTTAAGAGAGCGGAGAGATGTTTTACCCGCATTACCAGCTGGATCTCTGTCTCTTCTGCTCTCCCAGCTCTGTTAACTTTAGTTAgctaaagaagataaaaaataacttCTTCTAGATGCGCTGTTACTGCTGGAGTTCATCATCAGGCAGGTTTCAAAGACATACATTGTTGATCATTGACTTCACTGCTGTACCATGGCTGGCCGAGGACGTGGCCGAGGACGAGGTCAGCTGAGTTTCAGCATCGAGGCGGTGGGAATAGGAAAAGGAGAAAATCTTCCACCTTCAACTGTTCAGCCTACACAGCTTTTTCCTCCACTGGAGCATAAGCCAGTGCCCTTGCAGACGTCAGAAGAGGCAGAGTACATGCTGGCTTTGAAGCAGGAATTCAGGGGAGCCATGAAGACTCTACCTTTCTACATACGACCTGCTGCACCCAAGAAAGATGTTGAGCGTTATTCTGACAAATATCAGTCTACTGAACCGTCCGACAATACCATCGAATGGACCCCAGactGGAAGCGTCTGCCGAAAGAGCTACGTATCCGGACGAAGAGGCCTCCGAGTGACAAGAACCCAGTCATTcccaaagagagcaaaaaaCCACGGGTCAACAAAGAGGAAATCATCCGCAAACTGGAGACGTTGgagaaaaaggaggaggaggtgagTTCTGATgaagaagagggagagaagaaaaaaacagaggaagaagaggCAGAGGGTGAGGAGGAGTATGatgaggaagagtttgaggAGGAGACCGACTACATCATGTCATACTTTGACAATGGTGAAGAATTTGGTGCAGACAGTGACGACAATATGGATGAGGCTATTTACTGAAGCGGCGCTGGATATCTGTGTGCAGCTACCAGAGGTTAAGCTGGGGGAGTTTGAGTCCTCCTCACAtcaagcacatttaaaaaaaaaaatgattatttcatttGGCAGCTGAGTGCGTAATCCAGATTCCTCTTCACGAAGGGGAAGGACTGTGTACTATAGGTATTCACACAGGATTGTTTTTTATAAAGGAAAGTAGGGCATTGCACCTGGGTGTTGTAATACACctgaaaatatatttagctCCTTTCACTTCattgattttacttttttttttaattcctgagagaattaaaaaaaaaacaacaacatgtaaatacaatacatgtatttgtaggtttccagtaaaaaaaaatatatgatggaCTGATTCAAGCATATGTTAGCAACATACACAGAACTGAATCAAGGCGTCAGGTTTAAGCAGTGTTTATGTAAAATCCACAgtgtttgtaatatttgtaacattttattgCACACCTGCTGTCAGTTTTATATTGTTGTATAGTTGGAATTTGTACttagattttctgttttttttttttttgtaaatagtgACATATTTCTGAGTAGGCTTATCGTTTGTGCATTAGTGTCTTACATTTAGAAAAATGAATCTgcacatttttatacattttagtattttgcattatatatgtttaaacaGTAAGTAGAAATGCAGTTAGTGACACCAGCactccaaaaaaatatattttaaggtcATTTAAAAATCGTATAGTATGTTTTAGAGACAGACacctgtatcttttttttttttttgcaacaggcacaattaaaaatcaatccgtcctaaaaaaaaaa

Function

symbol description
polr3gl Predicted to enable chromatin binding activity. Involved in transcription by RNA polymerase III. Located in nucleus. Part of RNA polymerase III complex.

NR:

description
DNA-directed RNA polymerase III subunit RPC7-like

GO: NA

KEGG:

id description
K03024 RPC7, POLR3G; DNA-directed RNA polymerase III subunit RPC7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237733.3 True 1997 mRNA 0.40 8 12623845 12633606

Neighbor

gene id symbol gene type direction distance location
muc1 NA coding downstream 96888 12517205 ~ 12526957 (-)
dcst2 NA coding downstream 212022 12394273 ~ 12411823 (-)
LOC103036879 NA coding downstream 238958 12365737 ~ 12384887 (-)
LOC103047577 LOC103047577,LOC108436568,LOC107717807,LOC107579407,LOC107681572,LOC107689872,LOC107741770,LOC105028477 coding downstream 260049 12361949 ~ 12363796 (-)
LOC103021619 NA coding downstream 332152 12286442 ~ 12291693 (-)
LOC103037451 gatad2b,LOC108436554,LOC108270204 coding upstream 41565 12675171 ~ 12718006 (-)
LOC103038418 LOC108436530,LOC108262988,LOC106580249,LOC107567515,LOC105908886 coding upstream 171064 12804670 ~ 12831851 (-)
dennd4b dennd4b,LOC106605454,LOC106580258 coding upstream 208305 12841911 ~ 12891916 (-)
LOC103023525 crtc2,LOC108436548,LOC106580288,LOC106605456 coding upstream 268671 12902277 ~ 12926324 (-)
gsdme NA coding upstream 365731 12999337 ~ 13016408 (-)
G90429 NA non-coding downstream 20730 12601507 ~ 12603115 (-)
LOC111193333 NA non-coding downstream 36297 12585443 ~ 12587548 (-)
G90405 NA non-coding downstream 109171 12512003 ~ 12514674 (-)
G90365 NA non-coding downstream 138502 12484007 ~ 12485343 (-)
G90361 NA non-coding downstream 140875 12481937 ~ 12482970 (-)
G90438 NA non-coding upstream 4483 12638089 ~ 12638324 (-)
G90547 NA non-coding upstream 158837 12792443 ~ 12792955 (-)
G90545 NA non-coding upstream 239415 12873021 ~ 12899679 (-)
G90567 NA non-coding upstream 306570 12940176 ~ 12944190 (-)
G90570 mpp6,LOC108267518,LOC107550794,LOC107749029,LOC107685533 non-coding upstream 338688 12972294 ~ 12981286 (-)
LOC103024123 LOC108436541 other downstream 454151 12162288 ~ 12169694 (-)
LOC103031398 dgat1b,LOC108436588,LOC108267870,LOC107741726,LOC107552801,LOC107671724,LOC107724797 other downstream 993844 11608471 ~ 11630001 (-)
LOC103045558 ensab,LOC103045558,LOC108441925,LOC108268136,LOC107741750,LOC107663348,LOC107587831,LOC107597988 other downstream 1880128 10732935 ~ 10743717 (-)
vps72 vps72,LOC107571619 other downstream 1928511 10682356 ~ 10695334 (-)
lysmd1 lysmd1 other downstream 1964239 10655471 ~ 10659606 (-)
LOC103038102 iqgap3,LOC106605450,LOC105031059,LOC105908924 other upstream 87363 12720969 ~ 12743217 (-)
G90571 mpp6,LOC108267518,LOC108436535,LOC107596657,LOC107749029 other upstream 317006 12950612 ~ 12967291 (-)
LOC103029309 osbpl3,osbpl3b,LOC108441521,LOC107678127,LOC107550826,LOC107685532 other upstream 388389 13021995 ~ 13135114 (-)
G90788 NA other upstream 1624349 14257955 ~ 14258956 (-)
LOC103022461 NA other upstream 2490907 15124513 ~ 15130106 (-)

Expression


Co-expression Network