LOC103039461 (LOC108277608,LOC108432448)


Basic Information

Item Value
gene id LOC103039461
gene name LOC108277608,LOC108432448
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32660879 ~ 32695461 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676434.1
TAGCTCCGCAGTGCTGGGCTGCTCTGTGCTCTGAGTTGTCAAATCCGCCTCCTCTCCGTTACTTTCACCATCCAGCGGAGCAACTTTTAcaacagaagaggaaactcCGGATTAACCGCGACCTACGGAGCTTCAGCATGCGGGGAATCTTCGGAATTTCGTCGTTATTTCCTGGTTATTTCGCTTTTCGGTATCATTAGCGAGTTTACGGGCTGTTTATAGATTTTAGAGTATAGAGATAGAGTTAGCAGCGcagctaacttagcttagctccCCTCACAACCTCACAACTGACTAACTAACGGCAGCGAGAGGGTTTCTCTCCTCAGAACTCGCCTTAAAATAgcttatataacattttaaactcaGAGAAAACATAAATGTGATCTTTAAACCTGACAGCTGCCTAATTTAAGCTGTGATTCGCTggatttattcacttttttcactttattttgagGATTAGCTTCTTCTGAAATGCAGCTGATAAGCAGGAAGAGGGGCAGAGAAAAGCTTTAGCTCAGTCTGAGGGGCGAAAAAACTCACAAACAAGCCAAAAACTAACGGATAAATCAGCAAAtagctgtttatttttaattataaaacttacattagctttaaaaaatatttagcgTTTTTTACTACGTTTTGTACCTGCTAAAATCGTAGTTAGGTAGTTTAGTTTGGAATTTTTTTAGgataaaaaattgtaaaaatgcgCGAACCCACTGGGAATTTCACCTTCCTCCACAGGATCTGCACTCTGGTCGTGCTCCTGTGTTTTGTCCACATTTCTGTGACTTTATTGTACTATGTGAAGTCTTGGGACTTCAAACAGCCTTCTATACAAACCCAGCCAGGCCAAAGGAAGCTGACATTTAATAGAGAAAGCAGTGAAGAGGAGTCTAAACCCACCACCAACCTTCCTCACATCATCCCCAACATTACTGACACACCTGAGGAGCTCCAGCAATGCCCAGACCCTTCACCTTTACTAGTGGGTCCTCTCCGGATCGAGTTCTCCGCTCCGGTCAGTCTGGAGCACGTGAGGAGCGAGAACCCCGCGCTGCAGGAAGGAGGACGCTTCAAGCCCAAAGACTGCATCGCTCTTCAGAAGGTGGCCATCATCATCCCCTTCCGCAAGAGAGACGAGCACCTGAAGTTCTGGCTGTACTACCTGCACCCCATCCTGCAGCGGCAGCAGCTCGACTACGGGGTCTACATCATAAACCAGGACGGAGATGAGACGTTTAACCGGGCGAAGCTCCTGAACGTGGGCTACGCTGAGGCTTTGAAGGAGTACGGTTACGAATGCTTCGTCTTCAGTGACGTGGACCTCATCCCCATGGACGACCGCAACACCTACAAGTGCTTCAGCCAGCCCAGGCACCTGTCCGTCTCCATGGACAAGTTCGGTTTCAGGCTGCCGTACAACCAGTACTTTGGCGGCGTGTCCTCCATGAGCAAGGAGCAGTTCCTGAAAATCAATGGCTTTCCAAATAACTACTGGGGCTGGGGCGGGGAGGACGATGACATCTTCAACAGGCTGAGCTCCAAAGGGATGTCCATATCCAGGCCGAGCGGCGCGATCGGGAAATGCAGGATGATCCGCCACGATCGGGATAAACAGAACGACCCAAATCCTCAAAGGTTCGACCGGATAGCTCACACCAGAGAGACCATGCACAAAGACGGCATCAACTCCTTATCCTACAAAGTGGTGAAAGTGGAGAAGGACCAGCTGTTCACCAAAATCACAGTGGACCTCGGCGAAGCACCGAAGTGACGGACGTATTCTTGAACGTCCACCGGATGCAGTAACCAAATGTGCCTTGGCTTTATGTCAGATATGCAGCGGAGTGTCGGCGGCGTAGACTTTTTAATTCAGAGTTTCagagaaaatattatatttttgaaaGACTTTTCACAATTATCTTGCCATCTTTGCACAAGCAGTGGCGTAGCGCGAAGCGCGATGGGGGGTGGAGGACAGGTGGAgggcttttctatttttttattttaacattttttttgtttctcttttttgtgaTAAACTAAATAAACCCCACTGTTGGCCTCGGCGACTGCTGCTAGGGTAACGA

Function

NR:

description
PREDICTED: beta-1,4-galactosyltransferase 1-like isoform X1

GO: NA

KEGG:

id description
K07966 B4GALT1; beta-1,4-galactosyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676434.1 True 2102 mRNA 0.47 6 32660879 32695461

Neighbor

gene id symbol gene type direction distance location
noa1 NA coding upstream 15158 32639913 ~ 32645721 (+)
igfbp7 igfbp7 coding upstream 39427 32609520 ~ 32621452 (+)
LOC103035388 NA coding upstream 52097 32594641 ~ 32608782 (+)
LOC103039765 cpxm1b,LOC108432441,LOC108274665,LOC105911438,LOC107587055 coding upstream 67498 32569606 ~ 32593381 (+)
LOC103022853 LOC108432419,LOC108277145,LOC105028844,LOC103366337,LOC107082714,LOC107697613 coding upstream 317648 32183330 ~ 32343231 (+)
srp72 srp72,LOC107662169,LOC107552350,LOC107731365 coding downstream 88725 32784186 ~ 32794356 (+)
arl9 arl9,LOC107552351,LOC107729322,LOC107731368,LOC107662170 coding downstream 99857 32795318 ~ 32798887 (+)
thegl NA coding downstream 105873 32801334 ~ 32809334 (+)
slc16a2 slc16a2,LOC107731360,LOC107758472,LOC107552352,LOC108279893 coding downstream 182252 32877713 ~ 32906232 (+)
ints10 ints10 coding downstream 249238 32944699 ~ 32955288 (+)
G15105 polr2b,LOC102791558 non-coding upstream 33639 32622183 ~ 32627240 (+)
G15096 NA non-coding upstream 169908 32484568 ~ 32490971 (+)
G15094 NA non-coding upstream 210319 32450350 ~ 32450560 (+)
G15002 nfkb1 non-coding upstream 517249 32142733 ~ 32143630 (+)
G15001 NA non-coding upstream 521387 32138680 ~ 32139492 (+)
G15114 NA non-coding downstream 5059 32700520 ~ 32700912 (+)
G15117 NA non-coding downstream 12168 32707629 ~ 32707855 (+)
G15121 NA non-coding downstream 25846 32721307 ~ 32721631 (+)
G15120 NA non-coding downstream 36784 32732245 ~ 32733626 (+)
G15119 NA non-coding downstream 38369 32733830 ~ 32736198 (+)
G14985 NA other upstream 482281 32174401 ~ 32178598 (+)
smim13 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766,LOC107669968,LOC107734024 other upstream 615816 32041035 ~ 32045063 (+)
LOC103035097 fam193b other upstream 1483287 31161067 ~ 31177592 (+)
LOC103032125 NA other upstream 1888726 30739044 ~ 30772153 (+)
G14638 rps15a,MGC114789,RPS15A,LOC107686992 other upstream 2392497 30260677 ~ 30268382 (+)
G15160 NA other downstream 225563 32921024 ~ 32924785 (+)
G15170 NA other downstream 327775 33023236 ~ 33066558 (+)
nsg1 LOC108431918 other downstream 1327862 34023323 ~ 34121443 (+)
G15411 mcm7,LOC102777806,LOC107716516,LOC107744067,LOC107665623 other downstream 1524482 34219943 ~ 34228038 (+)

Expression


Co-expression Network