G38169


Basic Information

Item Value
gene id G38169
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21686883 ~ 21693765 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51471
aaaacgggtcccacagacccgaacaccacacaagggttaaaaattgtatttctgagtttttttgtctgtattttatcaGCAGAATAATTAAAGTCTGTAAACTAGCTAGAAATGCTCTACAATTTTTGActgttaaaattgtaaaaatattaagtgTTTTCTGTCATTCAATCAATATATTCTATATGTTGAATTAGTATTGTTTctggttgtttttttctgcttgacTGTATGATAAACATTATCTTAAACCATTGCAATCCAGTTTGAAATAGCCATAACAActttcatatgttttttgtttcctaggaaaaaaatagaaaaatgtgtttatttcagGATGGCATCAATGTACagtaatatacagaaaaaatatactgattaaaacaaaaatacaaaatatagagTGATTGTTACATGTGAAACATATTCTGTGTAGCTGTTttcttgtgttgtgttttttttctctttttcctggTCTTCCTCTGCTTCTTTGCCTATCTCTTTCTAATAGGTGGATTGCAGTGCCATTCCAACTCGACCCTCATTGACCTCTGCTGTTCTGCCAATCAGAGAGCTCTGTTGGTCCAAATGGGGGTGGGACCACCTGTTTATAAGCTGTTCCAGGAAGTtggccgctctctctctctttttttgactCATTTGTGGTGCTGGGTGCTGTCCCCCTGTGTTCTCAATTTGCTTTGCCTACTTCTAGGCTAGATTGTTAAAATGGGATGCTTTAACCCATTTGTTCTGTTTTCTCCCCTCTTCTAGGAAGGGAGAACAGGTTACCTGATTGTCTAAACACACCAGGTTAGAGGGCGGGTACCACCCCCTGTAGTTATAttcatgggcgtggtagtggggggaaaagtggacctgactacccagggcccgagtagggagaggggcccatgaaaatcctgattttattttcgctcactttcctttgtttactggcatggataggggcccattaacatagagggtgtacagggcccagaatttgctgctacgcccctggttATATTAGCCTAGCCTAGAGTAGTAGttagtacattttttttctttcctctttagTTAGTTTAGATTTTCTTTGTAAAGCTTAGTGtagaatgttttattattttcttttctttggtaC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51471 True 1147 lncRNA 0.38 2 21686883 21693765

Neighbor

gene id symbol gene type direction distance location
dlx3 dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903 coding upstream 57707 21625601 ~ 21629176 (+)
ace ace,LOC107653924,LOC107664635 coding upstream 212765 21430472 ~ 21474118 (+)
LOC103044640 NA coding upstream 333991 21352191 ~ 21352892 (+)
slc35g1 si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601 coding upstream 542689 21142586 ~ 21144194 (+)
pde6c pde6c,LOC107557364,LOC107598595 coding upstream 608982 21055568 ~ 21077901 (+)
LOC111192390 NA coding downstream 130614 21824379 ~ 21828127 (+)
ptges3l ptges3l,si:ch211-131k2.3,LOC107653952 coding downstream 150200 21843965 ~ 21850981 (+)
g6pc g6pc,g6pca.2,LOC106579337 coding downstream 179547 21873312 ~ 21878213 (+)
sgms1 sgms1 coding downstream 244864 21938629 ~ 21950677 (+)
LOC103023313 NA coding downstream 265682 21959447 ~ 21984284 (+)
G38152 NA non-coding upstream 66323 21574862 ~ 21620560 (+)
G38155 NA non-coding upstream 78556 21583458 ~ 21608327 (+)
G38120 LOC102799035,LOC103365053 non-coding upstream 317614 21364361 ~ 21369269 (+)
G38117 NA non-coding upstream 327323 21359139 ~ 21359560 (+)
G38099 NA non-coding upstream 364272 21321839 ~ 21322611 (+)
G38301 NA non-coding downstream 84893 21778658 ~ 21779093 (+)
G38306 kat7,LOC108443263,LOC107695506,LOC107557320,LOC106579267 non-coding downstream 134385 21828150 ~ 21841278 (+)
G38310 LOC108443262,LOC108274343,LOC107695523,LOC107708934,LOC107654044,LOC107598610 non-coding downstream 176657 21870422 ~ 21871536 (+)
G38314 NA non-coding downstream 187671 21881436 ~ 21882906 (+)
G38324 NA non-coding downstream 215296 21909061 ~ 21937073 (+)
plce1 plce1,LOC107743958 other upstream 390060 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 558119 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 656086 21019169 ~ 21030797 (+)
G37943 NA other upstream 1528544 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 2175442 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 2053704 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2053806 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 2053908 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 2054010 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 2054112 23747877 ~ 23747949 (+)

Expression


Co-expression Network