G144855


Basic Information

Item Value
gene id G144855
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 135392 ~ 137202 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU164582
AAATTTATCCAACAAACCATTTCCTAAAAAGATATAAAAATGATCTTTCTGAATCTTGTGTATTCTGTAAAATGGATACTGAAACTATTTTACATCTTTTTTTTGATTGTATGTATGTTAAATTCTTTTGGATTGATGTGGAATATTTATTTAATATGTTAAGTGGAATCCAAATTAATATAGAGAAAAGAGATGTTATTTTTTATTATGACAAAAAAGGTATAGATAAGAGTCATGTGTTTATGTTAAATCTTATAATATTACTTGGTAAATTTCATATACACAAATGTAAATGGTCTGAAAGGATACCTAATATCACCCATTTCAAGGCTGACATGAAGATTTATTTTGAAACATTACAAGGACTGTCAAACCGCAAAGCAATCAGAACTATAAACATTTACAAAGACTTAAATTCCTCTTCTTTAATTTAAATATACATGTATACCCTTTTTTTTTTTTTTTT
>TU164584
TACTTTAAAATAATACATAAAATTTATCCAACAAACCATTTCCTAAAAAGATATAAAAATGATCTTTCTGAATCTTGTGTATTCTGTAAAATGGATACTGAAACTATTTTACATCTTTTTTTTGATTGTATGTATGTTAAATTCTTTTGGATTGATGTGGAATATTTATTTAATATGTTAAGTGGAATCCAAATTAATATAGAGAAAAGAGATGTTATTTTTTATTATGACAAAAAAGGTATAGATAAGAGTCATGTGTTTATGTTAAATCTTATAATATTACTTGGTAAATTTCATATACACAAATGTAAATGGTCTGAAAGGATACCTAATATCACCCATTTCAAGGCTGACATGAAGATTTATTTTGAAACATTACAAGGACTGTCAAACCGCAAAGCAATCAGAACTATAAACATTTACAAAGACTTAAATTCCTCTTCTTTAATTTAAATATACATGTATACCCTTTTTTTTTTTTTTTT
>TU164586
AAATGGATACTGAAACTATTTTACATCTTTTTTTTGATTGTATGTATGTTAAATTCTTTTGGATTGATGTGGAATATTTATTTAATATGTTAAGTGGAATCCAAATTAATATAGAGAAAAGAGATGTTATTTTTTATTATGACAAAAAAGGTATAGATAAGAGTCATGTGTTTATGTTAAATCTTATAATATTACTTGGTAAATTTCATATACACAAATGTAAATGGTCTGAAAGGATACCTAATATCACCCATTTCAAGGCTGACATGAAGATTTATTTTGAAACATTACAAGGACTGTCAAACCGCAAAGCAATCAGAACTATAAACATTTACAAAGACTTAAATTCCTCTTCTTTAATTTAAATATACATGTATACCCTTTTTTTTTTTTTTTT
>TU164577
ACACCTAGGATGGCTTGAGGGTGAGTAAAGCTTGGGGTAATTTTCATTTGAAAGTGAACTAATCCTTTAATTAAAACTATTAAAAAACTGATCAAAGCATATCCACCTAGCAATCATTAAGTGTTTTCCGAATTGTCTTTTTCAATTATAATTCAGGTTATTGCTGTGTAAATATTGCATTTTTGTTGCACATTCCAAATGAAATTCCAAATGATGATTGTTTTTAAACACAAATGCTGGACATTCTTTGTTATATTGTAATAATTAAAAAAAAAAAAATGTAAATAAAATCGTTTGCATAATCGTGGTGAAGATTGCA
>TU164581
ACTCCACACGGCTCCAGGGGGTTAATAAAGGCCTTCTGATGCAAAGCGATGCATTTGTGTAAAAATATATTTATACATAATACATATTTAACAAGTTATAAAGTAAAATATCTAGCTTCCGCCAGACCGCTTTCCGTATTCAAGTTCCAAAGAAAGTTAAAATGGCGTCGCATCAGTTACACTTTTTATGTAAGTTAAATAGGGAAGGTGTAGGACGTAGCGTAAGCTTTTTGAACTGCGAGAGTTTTACACTTTCTTGCTAGATAACTTGTTAAATATGGATTTATTTATTTTTTTACACAAACGCATCATTTCACTTCAAAAGGACTTTGTTAACCCCCCGGAGCTGTGTGGAGTACGTTTATGATGTATGGAAGCACTTTCTTCAGCTCATACTCGTTGGTATCGCTCACTGCCATTAAAAAGCTCGGATGAGTCAGGATATTTATTAATATAACTCTGATTATGTTCATCAGAAAGAAGAAAGTCATATACACCTAGGATGGCTTGAGGGTGAGTAAAGCTTGGGGTAATTTTCATTTGAAAGTGAACTAATCCTTTAATTAAAACTATTAAAAAACTGATCAAAGCATATCCACCTAGCAATCATTAAGTGTTTTCCGAATTGTCTTTTTCAATTATAATTCAGGTTATTGCTGTGTAAATATTGCATTTTTGTTGCACATTCCAAATGAAATTCCAAATGATGATTGTTTTTAAACACAAATGCTGGACATTCTTTGTTATATTGTAATAATTAAAAAAAAAAAAATGTAAATAAAATCGTTTGCATAATCGTGGTGAAGATTGCA
>TU164580
ACTCCACACGGCTCCAGGGGGTTAATAAAGGCCTTCTGATGCAAAGCGATGCATTTGTGTAAAAATATATTTATACATAATACATATTTAACAAGTTATAAAGTAAAATATCTAGCTTCCGCCAGACCGCTTTCCGTATTCAAGTTCCAAAGAAAGTTAAAATGGCGTCGCATCAGTTACACTTTTTATGTAAGTTAAATAGGGAAGGTGTAGGACGTAGCGTAAGCTTTTTGAACTGCGAGAGTTTTACACTTTCTTGCTAGATAACTTGTTAAATATGGATTTATTTATTTTTTTACACAAACGCATCATTTCACTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164582 False 466 TUCP 0.25 1 135392 135857
TU164584 False 485 TUCP 0.24 1 135392 135876
TU164586 False 397 TUCP 0.25 1 135392 135788
TU164577 False 319 lncRNA 0.29 1 136391 136709
TU164581 False 812 lncRNA 0.33 1 136391 137202
TU164580 True 321 lncRNA 0.35 1 136882 137202

Neighbor

gene id symbol gene type direction distance location
CI01000028_00133579_00134596 NA coding downstream 1589 133579 ~ 134802 (-)
CI01000028_00129953_00131814 YIF1B coding downstream 4577 129854 ~ 131814 (-)
CI01000028_00137862_00152223 NA coding upstream 660 137862 ~ 152223 (-)
CI01000028_00331781_00342935 SHKBP1 coding upstream 193966 331168 ~ 342935 (-)
CI01000028_00346500_00350741 NA coding upstream 209223 346425 ~ 352059 (-)
CI01000028_00363732_00407780 PPP1R37 coding upstream 225904 363106 ~ 408176 (-)
CI01000028_00443151_00444100 BMP16 coding upstream 305929 443131 ~ 444100 (-)
G144823 NA non-coding downstream 12350 99964 ~ 124041 (-)
G144825 NA non-coding downstream 33691 76010 ~ 102700 (-)
G144832 NA non-coding downstream 76696 59469 ~ 59695 (-)
G144830 NA non-coding downstream 77360 58683 ~ 59031 (-)
G144806 NA non-coding downstream 110069 25951 ~ 26322 (-)
G144827 NA non-coding upstream 24046 161248 ~ 192616 (-)
G144915 NA non-coding upstream 77337 214539 ~ 246074 (-)
G144946 NA non-coding upstream 282602 419804 ~ 420120 (-)
G144952 NA non-coding upstream 313345 450547 ~ 451153 (-)
G144961 NA non-coding upstream 332861 470063 ~ 470387 (-)
G144855 NA other downstream 515 135392 ~ 137202 (-)
CI01000028_00474810_00475211 NA other upstream 336407 473609 ~ 475211 (-)
G146190 NA other upstream 1960368 2097570 ~ 2111265 (-)
G146238 NA other upstream 2010176 2147378 ~ 2160038 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other upstream 2304130 2441332 ~ 2445596 (-)
G149329 NA other upstream 6562311 6699513 ~ 6701240 (-)

Expression


Co-expression Network