G147180


Basic Information

Item Value
gene id G147180
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3929228 ~ 3935364 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU167196
CTCTTTGATTCTTGGCTTTTCTTGGGCACTCTCTCTGGCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU167196 True 102 lncRNA 0.49 2 3929228 3935364

Neighbor

gene id symbol gene type direction distance location
CI01000028_03669254_03670964 NA coding downstream 257798 3668964 ~ 3671430 (-)
CI01000028_03628921_03634707 NA coding downstream 294349 3628690 ~ 3634879 (-)
CI01000028_03608674_03621881 NA coding downstream 307319 3607598 ~ 3621909 (-)
CI01000028_03573572_03578958 NA coding downstream 350146 3572138 ~ 3579082 (-)
CI01000028_03526529_03542023 NA coding downstream 387099 3526079 ~ 3542129 (-)
CI01000028_04014641_04074641 NA coding upstream 79109 4014473 ~ 4074813 (-)
CI01000028_04128511_04130775 NA coding upstream 192819 4128183 ~ 4130922 (-)
CI01000028_04161038_04162439 NA coding upstream 225666 4161030 ~ 4163103 (-)
CI01000028_04171026_04177666 NECTIN1, PVRL1B coding upstream 235523 4170887 ~ 4177666 (-)
CI01000028_04445707_04445922 NA coding upstream 510302 4445666 ~ 4445922 (-)
G147139 NA non-coding downstream 91796 3837183 ~ 3837432 (-)
G147028 NA non-coding downstream 204634 3703484 ~ 3724594 (-)
G147027 NA non-coding downstream 231482 3696220 ~ 3697746 (-)
G147025 NA non-coding downstream 242723 3685751 ~ 3686505 (-)
G146975 NA non-coding downstream 360529 3568450 ~ 3568699 (-)
G147185 NA non-coding upstream 9603 3944967 ~ 3945244 (-)
G147186 NA non-coding upstream 11209 3946573 ~ 3946774 (-)
G147197 NA non-coding upstream 21336 3956700 ~ 3956915 (-)
G147208 NA non-coding upstream 36066 3971430 ~ 3971773 (-)
G147218 NA non-coding upstream 50155 3985519 ~ 3985795 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other downstream 1482915 2441332 ~ 2445596 (-)
G146238 NA other downstream 1769190 2147378 ~ 2160038 (-)
G146190 NA other downstream 1817963 2097570 ~ 2111265 (-)
CI01000028_00474810_00475211 NA other downstream 3453882 473609 ~ 475211 (-)
G144855 NA other downstream 3793352 135392 ~ 137202 (-)
G149329 NA other upstream 2764149 6699513 ~ 6701240 (-)
CI01000028_06969947_06983352 NA other upstream 3035393 6965064 ~ 6984084 (-)
G149474 NA other upstream 3294427 7229791 ~ 7232783 (-)
CI01000028_07527725_07535631 ARPP19 other upstream 3590598 7525962 ~ 7535743 (-)
G149923 NA other upstream 4039204 7974568 ~ 8024244 (-)

Expression


Co-expression Network