RNA id: TU161496


Basic Information

Item Value
RNA id TU161496
length 352
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G109273
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 608080 ~ 608431 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAACACTGGGGGTTAGTTAGGAGGTTTGAGGCAACTAGAATGGTTCTGCCAATCTTTTCTTGGGGGAGAGAGGCTTGGAAGTTTTTTGAGTCGAGATTTATGCCTAGAAATTCTATGGAAGTACTGGGTCCTGAGGTTTTTTCTTGGGCTAGGGGAATTCCAAGCTCGGCAAAGACTTTTTGGACTGTCAAAAGATTGGCCGCTGGGATAGTGTTTGGAGGAGAAACGATGAGGAAATCTTCGAGGAGATGGATGAGATAAGGAATTTGATAGTTATTACAGAGGATCCAGCAAACTGCTTCGGATAGCATGTCGAAAATTTCGGGGCTACTTTTGCAGCCGAAGGTAAGGC

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG:

id description
ko04658 Th1 and Th2 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161495 lncRNA downstream 22577 584657 ~ 585503 (-) False LOC122360679
XR_006252827.1 lncRNA downstream 22602 582333 ~ 585478 (-) True LOC122360679
TU161471 lncRNA downstream 157572 450294 ~ 450508 (-) True G109248
TU161439 lncRNA downstream 256036 346519 ~ 352044 (-) False G109218
TU161441 lncRNA downstream 260636 342871 ~ 347444 (-) True G109218
TU161499 lncRNA upstream 51537 659968 ~ 660352 (-) True G109276
TU161506 lncRNA upstream 201602 810033 ~ 810608 (-) True G109283
TU161515 lncRNA upstream 357307 965738 ~ 966074 (-) True G109292
TU161533 lncRNA upstream 505312 1113743 ~ 1121705 (-) True G109308
TU161535 lncRNA upstream 505312 1113743 ~ 1195829 (-) False G109308
XM_043261994.1 mRNA upstream 673880 1282311 ~ 1292313 (-) True LOC122361052
XM_043260038.1 mRNA upstream 888155 1496586 ~ 1510434 (-) True LOC122359849
XM_043260039.1 mRNA upstream 888155 1496586 ~ 1509311 (-) False LOC122359849
XM_043260624.1 mRNA upstream 936856 1545287 ~ 1549931 (-) False pmvk
XM_043260625.1 mRNA upstream 936856 1545287 ~ 1549823 (-) True pmvk
XR_006252910.1 other downstream 313095 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 329606 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 330001 277961 ~ 278079 (-) True LOC122361151
XR_006252913.1 other downstream 331975 275987 ~ 276105 (-) True LOC122361280
XR_006252890.1 other downstream 333563 274399 ~ 274517 (-) True LOC122361170
TU161498 other upstream 24034 632465 ~ 632897 (-) True G109275
TU161510 other upstream 274028 882459 ~ 882752 (-) True G109287
TU161934 other upstream 2519630 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 3486326 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 4623780 5232211 ~ 5245461 (-) True vegfaa

Expression Profile