RNA id: TU161742


Basic Information

Item Value
RNA id TU161742
length 1515
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G109460
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1736188 ~ 1997307 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTGGGATTTAGCATACTAAATGACTGGATAAATGTCATATTactgaacaataaaaatagcaaaatagtTTGCAATCTGATTTCAGCAAGAAAAACGAAAGGACAACCAAACACTGAATAgctataaaatattgttttaattaaatgcctTTTGAATGAATCTAGCAAAGACAGAAAAGCAATCACCGCaattaaaataaaggaaaacgCACATTTGAACCATTTCATTATCGTTTTAACCGTGTTATTAGTAGTGTGGAGTTGCAGCATCTTCTGTAATTATTAGTCATACAAGGAATGATATAAACAGCTGAAAGTTTGTACACAAACAGCATTGTCTCGAGAACAGTCTGCCGAGAAGTCGCCTGGTGGTGGCGTAAGCTCTGCGGTTTTGCCCGCTGTCTCTCTGTCTCGGTCTGGGGTAAAACACTCACCGATTCCTCTAAACGAATAATCACTCTCAGCTGTGTGTCGTCTGCAGCACTGATCTACAGTCCCCACAACCCCCTAAACACAGACAGCCAGTCTGCCTACAGGTTGTAAAtaaataaggggggaaaaaaaaaaaaaatactgtaaggTTAATTTGTTGGAAACAGTGCGATATGATAATGTATTTGTATGGCCTCTGACTTGCAATACATACCCATTTCAAAGATCAAACATTTGCTCTGAATGAATAGAAAAAACTATTTCCAAgcggatgaaaaaaaaaatgtaaattagaaGAAAGCCGGGAAAAAGAGCTTCGTTTGTGCTATATCCCACTAACATTCGTCTGGGATCGTGACTAATCGGCTCGTGGGATGATCACCTCCACTGAGCTGTGCGACCCCCTACATGGCTGCCAAAACCAGACACTGACACATTTAATCCGGTGAATGAAGTCACCGATATTTTTTTCCATCGTTTTTTTCCATCTTCATTTTACACCTCATCTGACCCGGACGCATACGTAAAACGTGTTGATGATCAAGCCCCATGGCGGTCGTTTAGTGGcctcattaaacacaaaaaaggatTCCTTCTGATAATTAACAGATCTGAGGGTCTAAGCGTACGTTACTCACAAATTAGAGAGTGGGAACGGGAGTGTTAAAGAGTTAATGGGGAGGGGATACAATCACATCGAGCTTGTGCAAATGTATGAATGTGAGAATTTTAAAGGCAGCAAGAACAGGGGACCCATCTGAGAAGTCGTTTCGAGAGAGTCTTCTTCGTGTGAAGCGCACAGAACGCCGTTGCTTGATGACCATCGCTCGATAAGGCCACTGCAGGgatgagaatgagaaaacaGGAAGAAATGGTGTGCCATCAGAACGTCTCTGCAGATGCTGTATCCCTAATTCTCCATCGACGGACAACTGGATCTTCTGGAATCAGTCACTTGGTGCCGGGATGATGCTGATGTGGAGAAAGTTGTCTGGGTGGCTCAAGTGTTCGCTCAACCACTGGATGGGTGTTTCCAGCAGCGGTTCGATGCCGTGAATCATAACCTGGAATCTCTTTGGCTCG

Function

GO:

id name namespace
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161720 lncRNA downstream 90138 1645614 ~ 1646149 (-) True G109444
TU161719 lncRNA downstream 90138 1645801 ~ 1646149 (-) False G109444
TU161710 lncRNA downstream 92114 1643873 ~ 1644173 (-) True G109442
TU161709 lncRNA downstream 93244 1642630 ~ 1643043 (-) True G109441
TU161708 lncRNA downstream 94975 1640777 ~ 1641312 (-) True G109440
TU161776 lncRNA upstream 222259 2219566 ~ 2225804 (-) True G109481
TU161777 lncRNA upstream 276245 2273552 ~ 2273936 (-) True G109482
TU161780 lncRNA upstream 281709 2279016 ~ 2279655 (-) True G109485
TU161785 lncRNA upstream 403379 2400686 ~ 2400892 (-) True G109490
TU161796 lncRNA upstream 515468 2512775 ~ 2513567 (-) True G109500
XM_043261290.1 mRNA downstream 16172 1718035 ~ 1720115 (-) True med18
XM_043260251.1 mRNA downstream 31566 1684904 ~ 1704721 (-) True foxo6a
XM_043261004.1 mRNA downstream 73660 1656548 ~ 1662627 (-) True nt5c3a
XM_043261003.1 mRNA downstream 76394 1656548 ~ 1659893 (-) False nt5c3a
XM_043260686.1 mRNA downstream 81772 1648367 ~ 1654515 (-) False si:ch73-341k19.1
XM_043261422.1 mRNA upstream 3474 2000781 ~ 2010666 (-) True LOC122360634
XM_043260444.1 mRNA upstream 703014 2700321 ~ 2700949 (-) True LOC122360106
XM_043260895.1 mRNA upstream 902006 2899313 ~ 2915431 (-) False sim1a
XM_043260894.1 mRNA upstream 902006 2899313 ~ 2915431 (-) True sim1a
XM_043260896.1 mRNA upstream 902006 2899313 ~ 2908777 (-) False sim1a
TU161510 other downstream 853535 882459 ~ 882752 (-) True G109287
TU161498 other downstream 1103390 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 1441302 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 1457813 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 1458208 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 1130754 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2097450 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 3234904 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 3238339 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 3362203 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile