RNA id: XM_043261971.1


Basic Information

Item Value
RNA id XM_043261971.1
length 5128
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC122361037
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 10745576 ~ 10764305 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAATATTTTTATGATCAAAGCTCTAGTTTTTACCGTGGGGTCAATACATAACGGACAACAATGAACAATCAAGTAAATCATTAActattaacaatataaaaaaagtatttttctacatttacatGAAGCACCAATCACAAATCATGCAATATATTGTGCACGATAATTCTCCAGCATTATTTATAAGAGGACTTAGACGTCATGTATGACAATTTATAAATATCTACAATTCATTTACACGACGGCTTACACTCTATAAAACCTGCTGCATTTCGTacgcacattttaatattatcatcatttttcCAATATGTAGTATCCGCTCGGCCCGTCTCTGCCCAGAATGTGTCTTCAGCTAAAGTGGACTAATATAAATCTCTTGGGTTTGAGGGCCAGGCCTGACCTGTACTGTTGGCCCCCACGAGCCTTTGTTTGGCAGACGCCTCTGCTTCTCCTTTCATCCTCCCTTGAGATAAATCCCTTGATGGACCTTCTCGACTCTGGTTGAAAGTGCAGCGCAGCCGCCATACATCACAGCGGAGCTGGTCCGTTTGATGTGGGGCTGCCGTGGCCCACGGGTGGGCTGGAGATGGACTTCCTCGCAGTTCCCCCTAAAAAACTCACTCATCAATCCTAGCATCTGACCGCAGATCTCCTTCTTCTCCGGCCACCTCTGCCCTCTTGACCACGGAGAAGCAACAACAAGAACGCTCAGCACCAGGCCGGGTGGCGTTAGGGCAGAAGCAGCTATCCGTCACTCCGATCAGGCTCCTGGAAGCATATAAATCACTACTTAAATTGGTAAGGAAACTGACTGATATCACGCGACTCCTAGTCGCTCAcccaaatgaatgcatttaaaaataaactttagtCGCATCACATGAATCACGCTTTACTCCCTGAACCCAGCTGATAAGAAAAGACTGATAGTTCTGATAAATCGCTTTCACTTTCAGTTCCACGAGATCCCGGTTATTCCAGCTTCGTGTACCTAACCGTCCGCTGTCAGAAAACCATCAgcgatatttttgtttttttttcctcaagcaATTGCCACACCGTGTGCATCATGACTCACGATAAGGTGCCAAAATCACTTGAGGGGGAGGAAaccccacacaaacacaggaaGTGCTGCGTttcacacacagggacacagaGTCTGAGGTCTGTGCTCTGCTCCACTGATTTTGGAATAAGATTAACCTGGCCTGGAGTTACGTTATTGTTTCTCGTGACAGAGCGGCCTGAAAAAAACCACTGTGAAAAGTTGCAATATTTTGGTGCGTTGTGAGACCAAGGAAGTAATAAAACAGCACAGAAAGTGCAAGCCATTGAGGATCTGTCATATTAGGAGCGGAAATGAAAGTGGGTCTTGTTTTAGTGACGTTTATAGTGGCtttccaactttttttttgtccttgaaAACAATGGCCGACATGCAGATTCatgcagggagagagagagagaaaaaaaaatcactaagcAGCTTCTGTGGTGAAAAAGTTGCTTGCGTATTTCTTCGCTTGAGCATCTGTCGTTACCATAACATGGTTAACTCGGCATGTTAGAATAATGTCATTGACCTGAGTGCTTCTGACCGAGGAAGGTTATCAGTGGGGAAGAATTCTGACCAGATGACGGAGCGAAGGGACCACCCACCGTTATTGGAGCATGGGCGTTGTAGTCCACATTTGCAtctgctttatttaaatcatgtAAATATTCCATGTAGTCACCCAGTTTACGCGAGCTCGTGAAACAGTTCGAGACAGGAGCAGCTATCTTCACGTGTGTAGCTGTGTACgtgatataaaaacaacagcattccCAAACTGCGTCCGTTTCTTTACTTAACTCCCTTCATGAACACCTACTGTAAACTAGGGAAGCAATTGAGAAAGAATTCCCGAGTATCTGTTACAAATGTCGaatgaattatataatatttgatcaCTGGTTTATATCACCCCCTCATTCACTTAATCACTGGAATCCAGCTCAATCGCACAactttcttttgtaaaaaaaaaaaataataataataatatgacagTTTAGGCATCATTCTGGCGCCATCTAGTGGACGCCATGAAGAAATCATTATTTAGTCGCACATCACTTCTGGGCTTATGCACATAACCTGGTTTGCCACTAGATGGCGTAGTGATGTTGAAAATAACTTCAGTTAAAAGGACTGTCTTTAAAAAACAGTTACAGTCCATGAACGTTTCGAGATAAGAAATTGAGATATTTATATCAACTGAAAGCTTTAACGAGCTCTTTCTACTGGAAAAAGTACTGTCATCCATGCGTGTGCAAATCTGTATCGTAACAAATTGAAATCGTTGAGTTTGAGTACTttgaataatttgtattatatcaaAGTGAGAGCaagctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacttcaGTTACTAAATCATCATAGACTGCCTACCCAGCAGGACAACccaacttaaaatattaaatacggTCTGCAATGTCATATTTAAGTATGCTAAATAGTATGTTTGCAGTGTACTTTATTTCGCATAGACGTAATACACTTTGTgatcatttcaaaacaaacgctttaatttaaaatattttgtttcattattatttcgACGTCTAAAACCCACTAAAGCACATCTAAAGTAGCCTATCCgattatcatttatttgctattacatttaaattgaatatattgCTAAACTGCAGCTTCATTGACACATAATGCAGTTGGAAATACGTACACGacgcacattttaatattataatttcgTTGAGCGCGAATGCTCTTTGCAAGTCGAGGGTACGCAGGTGTGTAAAAGCACCCAAGTAAAACTCAAAAGGCtgcttattaaatgtttaaaaagtcttAAGAAGCGTGCAAGTCTATTTCCAGCCgtttaaaatgctatttgaaCGCACAGTAACGATATCTAAAAGGGCATCAAGATATCGCGCTACCTCGGACTGTTCGTACcgaaaatgtttacttttatgtaatttttaatgtcCTGTCCAAGTAGCCCAGAAGGGCGGAACAAAAATGAAGGCGAGGGGAAAACACGCAGGCTGTGTTTCAAAACGTACCGAGTCGCCTTAAGTAGACAGCGTTTTTAGCATCGACTCAATGAACTAAACCGCTCTCCGACGTGATGTCTAGAATCTGGAGCTCAATTCCAAAACCGCTACGGATGCTGCCTAGTTAGGCGGCTCGCTGTGTTTTGGAACGCCGCCTTGTTCTCATGAATCCCCATTGGTCAGACTAAAGCTCCTGCTGCCACAATACTGCACACACGTGACCCTGCTTTTctgtacacacacgcacacacacacagtaaaacacAGCAGGCACTTAAAAGCCAACGCCATGGCGCTTTGACCACCAATTTCACCCCATATCCAAACAAGCACCATGAACCCTCTCCGTTGACAAACACGCACTATCCCGCGGCTAATGGCGAGCGCGCTGCAGATGAAGCACTCCGGTCTGGAGCACACACGGAAGCGCGTAATAGATCCACGACGGAGACAAGCTGCGCTCTCATTCCTCAGCAACATCTCGCTGGACGGACGACCCGTGCAGGATGACGGGGAGAATCAGACCGAGGACGAGGACAGCTCCAGGACTAGACAGAGCCTGGTTTCTGCAGTGGGCCAGCAGGCATTGGCCGCGGCAGCGAACCAGGCTCTCAGCAGCGCCCGAGCTGCTGGTTTCATGGCTGGGATCACGGGTCCCAGCGCGGCCGCCTctgcctctgctgctgctgctgctgctcctcctcctccagcgtGCGGAGCGGATGCGGAGGGGGATGTGTGCGGCTCTCAGGTGCTCCAGTCCGTGTTCAGCTCCCCCTTTTCAGCAGTTCCGCCGGCTACGAGAGGGAGACTTCAGACGTACACTCAGGGAATCCTGCCCGTGTCCTACTCCAGGCAGTCCAGCCAGAACTACTGCTGTCTGGAGGGAGGGCAGATAGCCAACTCAGCCCTGGAACTGCAGAGATCCAGGCGGCGACTAATATCCCAGCGTTCCTCACTGGAGACTCTGGAGGATATTGAGGAGAATGCCCCTCTACGAAGatGCCGGACTTTATCTGGTTCACCCCGACCAAAGAGTTTTAAGAAGGtccatttcatcaaaaacataagACAGCATGACATGCGCAATGGAAGGATAGTCCTTATCAGTGGCAGAAGATCCTTCTATAGTGTTTTTTCTGTCCTGCCCTATCGAGATTGTAGCCAAACAGGGGATGTGAAGGCAGAAAGCGGACGCCAGCGACACCCCTCGGGTGGCATGAGTGCCAAGGAGATGGTGATCGGCCTGGAGGGCGTCGAGTTGGGTGCAGACGGCAAGACCGTGTCATACACGCAGTTCCTGTATCCAACCAATGTCCTGGGTCGTCGAAACACCATCGACTCCACGTCGTCTTTCTCTCAGTCCCGCAATGCCAGCCACCGCAGCCTCAGTCTGGCACGTGCCAACAGTAACCAGAGCAGCCTTGATACCGGCAATGAACTGGGAGATTTCAGGGAGTACGACCCCAATCTTCTGGATGACCCGCAATGGCCATGTGGAAAGCACAAAAGAGTGCTTATCTTTCCTTCGTACATGACGACGGTCATTGAATACGTGAAGCCGTCCGACCTGAAGAAAGACATGAACGAAACATTCAGCGAAAAGTTTCCACACGTTCAACTGACCCTCAGCAAAATCAGAAGCCTGAAAAGAGAGATCCGTAAATTAGCCCAGGAGGATTGTGGGTATGAAGAACCGACCATTGCCATGGCTTACGTCTATTTTGAAAAGCTCGCCCTGCACGGTAAACTAGACAAGCAGAATCGTAAACTTTGCGCCGGAGCCTGTATCCTGCTCGCTGCCAAGATAAGCAATGACCTCAAGAGGCCGGAGGTCAAACACCTCATAGATAGACTGGAGGAGCGTCTGCGGCTGAGTCGCAGGGATCTTCTATCGCTGGAGTTTCCTGTGCTGGTGGCTCTCGAGTTTAAACTGCATCTGCCTGAGCGCGAGATCTTACCACACTACAGACGCCTCTGTCAGACCCCCTGAATCCAGACCAGACCG

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0051302 regulation of cell division biological_process
GO:0007399 nervous system development biological_process
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164327 lncRNA downstream 15161 10730168 ~ 10730415 (-) True G111298
TU164074 lncRNA downstream 842595 9889071 ~ 9902981 (-) False gask1a
TU164073 lncRNA downstream 857347 9879635 ~ 9888229 (-) False gask1a
TU164072 lncRNA downstream 869912 9875392 ~ 9875664 (-) True G111097
TU164002 lncRNA downstream 990596 9754315 ~ 9754980 (-) True G111048
TU164374 lncRNA upstream 27259 10791564 ~ 10793616 (-) True G111329
XR_006252847.1 lncRNA upstream 159810 10924115 ~ 10924764 (-) True LOC122361039
TU164468 lncRNA upstream 395534 11159839 ~ 11160056 (-) True G111393
TU164502 lncRNA upstream 460881 11225186 ~ 11225409 (-) True G111420
TU164503 lncRNA upstream 461477 11225782 ~ 11226073 (-) True G111421
XM_043261967.1 mRNA downstream 157858 10571751 ~ 10587718 (-) True colec10
XM_043261969.1 mRNA downstream 175779 10553160 ~ 10569797 (-) False mal2
XM_043261968.1 mRNA downstream 175784 10553160 ~ 10569792 (-) True mal2
XM_043261956.1 mRNA downstream 323297 10408015 ~ 10422279 (-) True LOC122361025
XM_043261955.1 mRNA downstream 342540 10391834 ~ 10403036 (-) True prpf3
XM_043261961.1 mRNA upstream 44032 10808337 ~ 10811017 (-) False LOC122361028
XM_043261960.1 mRNA upstream 44032 10808337 ~ 10810978 (-) True LOC122361028
XM_043261964.1 mRNA upstream 53586 10817891 ~ 10823189 (-) False LOC122361032
XM_043261963.1 mRNA upstream 53586 10817891 ~ 10820678 (-) True LOC122361032
XM_043261674.1 mRNA upstream 93215 10857520 ~ 10883424 (-) True LOC122360812
TU163906 other downstream 1472971 9270971 ~ 9272605 (-) True G110974
TU163829 other downstream 1593393 9145930 ~ 9152183 (-) True G110911
XR_006252934.1 other downstream 2098021 8647414 ~ 8647555 (-) True LOC122361375
TU163623 other downstream 2109354 8633350 ~ 8636222 (-) True wu:fj39g12
TU163343 other downstream 2428891 8312265 ~ 8316685 (-) True G110556
TU164396 other upstream 97646 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other upstream 97646 10861951 ~ 10866428 (-) False LOC122360812
TU164545 other upstream 506359 11270664 ~ 11286432 (-) False G111450
TU164609 other upstream 646373 11410678 ~ 11411777 (-) True G111490
TU165859 other upstream 2889755 13654060 ~ 13683909 (-) True zgc:92606

Expression Profile