RNA id: XM_043261362.1


Basic Information

Item Value
RNA id XM_043261362.1
length 3124
RNA type mRNA
GC content 0.43
exon number 25
gene id LOC122360600
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11333175 ~ 11386993 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCATGTTTCCTGGTGTGAGGGTAAAGTACAAGGGAATATAGTGCCGTAATTTGAGTACTCAGTGTAGCAGAGAGTCGGGGACCAGACACATCAACCATGCTGCAACTGAAATGGGTATTCTCCGTATTATATCTTTTTTCGCGGTGCCCTGAGTGTGAGGCGTATGTGGTCAGACGGTCCGGCAAGGCAGGATCATCGGATGAGTCTTTCACTGCATTTCTTTCTGACTATCCATTTAACAGCCTGTCAGGTTCCTGCAAAAACAGATGCTTTGAACTAGTGGAAAGCGAACCCCCAAACTGTCGCTGTGACAACCTGTGTAAAACATACAGTACCTGTTGCCCCGACTTTGATGAACACTGCCTGAAAACAGCTGGGGGCTTTGAGTGCAGTAAAGACCGCTGTGGTGAAACTCGCAATGAACAGCATGCCTGTCACTGCTCAGAGGACTGCATGGCTAAAGGAGACTGTTGCACCAACTACAGGTCTCTCTGCAAAGGGGACATTCCCTGGTTGCAGGAAGAGTGTGAAGAGATTAAAAACCACGAGTGTCCAGCCGGGTTTGTTCGGCTGCCTATCATCATGTTGTCTGTTGATGGCTTTCGTGCATCTTACATGAAAAGAGGAAGCATGGTGATCCCCAATATTGAGAAACTTAGATCATGTGGAACTCACGCACCATACATGAGACCTGTGTACCCCACCAAAACCTACCCAAATTTGTATACAATTACAACAGGTCTTTATCCTGAGTCGCATGGAATTGTGGGTAACTCGATGCATGACCCTGGCTTTGAGGCCAATTTTAACATTCGTGGGAAGGAAAAGCTTAAGCATCGATGGTGGGGAGGACAACCTATCTGGATAACAGCAGTGAAACAGGGAGTAAAGGCTGGTACGTTTTTCTGGCCAGTTGGCATTCCAATGGAAAGGAGAGTTCTGACCATGTTGCAATGGCTTCATCTTCCGCATTCAGAGAGGCCatatgtttatgcaatgcattcTGAACAGCTGGATTCCTATGGCCACAAACTAGGACCTCACAGCACTGAGCTAGACAGTGCACTGAAGGACATTGATAAGGTGATTGGACAGCTAATGAATGGCCTGAAACAGATGAACCTGCACCGTTGTGTCAATATAATCTTGGTTGGAGACCATGgCATGGAGGAAGCTCATTGTGACCGCACAGAGTTCCTGAGCTCCTACATGTCCAACACTGAGGACATCATCCTAATTCCTGGGTCTTTGGGAAGAATCCGAGCCCGAAATCCAAACAACTCTAAATatGATGCCAAAGCAATTGTAGCAAACCTTACGTGTAAAAAATCCGACCAGCACTTCAAACCATACTTGAAGCAGCATCTTCCCAAACGTTTGCATTATGCCAACAATCACAGAATTGAGGAGGTTCACCTGATGGTCGAGAGGAAATGGCACATAGCACGGAAGTTCTATGAATCAAAAAGGAATCATGGGAAATGTGGGTTTGCTGGTGATCACGGATATGACAATAAGATCAACAGCATGCAGACCATTTTCCTTGGATATGGACCATCTTTCAAATTCAAGACAAAAATTCCACCTTTTGAGAACATTGAGCTTTATAATGTCATGTGTGATCTCCTTGGTTTGAAGCCTGCCCCTAATAATGGTACTCATGGTAGCCTTAACCAGCTTTTGAGGGCCCCTGTATACATACCCAGCATGCCTGAAGAAGTGAGCAAGCCAAACACTGCAGGACCAGTCACAGGTTTTAATGATGACCTGGGCTGCACATGTGAAGATAAGTTGCGTTCAAAAAGTAGAGGGCAGAGGGCACTGAAAGTGACCCTAGTAAGAGGATATAACCTGGAGTCACTGTGGCTCTGTCTGTTACAGAACAAGGTGGAAGAGCTTAATCAACGACTGAGACAAGTTATTGATGaCAACAGAAATCTTCCCTATGGTCGGCCAGCAGTCATGTTCCGCACCAAGTATTACATCCTTCATCATAGTGACTACATTAGTGGCTACAGTGAAGCTTTGTCCATGCCTCTTTGGACGTCTTATACTGTATCTAGACAGGTAGATTTCACCCCTCTGACTGAGGCTCTGAGTAACTGTGTTCAGCGTGATATTAGAGTTCCTTCAGCATACAGTCAGTCCTGCTCAAACTACCGTGCAGACAAACAGATCTCCTACAGCTTCCTCTATCCACCTCAGTTGTCGTCCTCTCAGGAAGTGAGATATGATGCCATTCTCATTACCAACACTGTACCAATGTACCCAGCATTCAAACGTATGTGGAGTTATTTTCAGAAATCACTTGTGAGACGTTATGCTAGTGAGAGAAATGGAGTGAATGTGGTTGTTGGACCCATCTTCGACTATGACTACAATGGTCTTAGAGATTCAGCAGAGACAATAAAACAGTATGTTAGTGGCTCTGTACAAATCCCAAGTCATTACTACATTGTGGTTACTAGTTGTCTGGATTACACACAGACTATTGACTCCTGTGCTGGTCCTCTCAGTGTTTTCTCCTACATCCTTCCACACAGAGCAGATAACGAAGAAAGTTGTAATAGTTCAGAGGACGAGACAAAGTGGGTTGAGGAActgatgaagacacacacaGCACGTATAAGAGATGTGGAGTTGCTTACAGGACTGGACTTTTATCGCCGCACCAGCAGGTCCTATGAGGAGATTCTCGCTTTAAAAACTTACTTACACACATATGAGAGTGAGATCTAAACCACTGCATCCCAGCATTAGCATTCCCTACATATTAACTGCCGGGTTGCAGAAGTaaggtgtatatttttatataaaccatcatatttattattctttttgctAATcctatgggtttttttttttttactttttttttattaatgctattctttttttacattctcCTTTATGTCCAGTAGGTCCAATGACCTTTATGCAtgggaaatttttttattctttaataatacttaatacatGTTTTGACCTGTGATGTTTGATAtgctgaatgtaaaaaaattaacataaagGTATCTGTACTGTAAACTGTAATCAAACCTGTTCTGTTATGACATCTGTGAGgtgttttgttactttttaattcCATTAAATAGTTTGCACAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0045765 regulation of angiogenesis biological_process
GO:0006955 immune response biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0048709 oligodendrocyte differentiation biological_process
GO:0050848 regulation of calcium-mediated signaling biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030247 polysaccharide binding molecular_function
GO:0004622 lysophospholipase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164553 lncRNA downstream 2304 11333175 ~ 11333662 (-) False LOC122360600
TU164543 lncRNA downstream 49534 11269620 ~ 11286432 (-) True G111450
TU164549 lncRNA downstream 69141 11266596 ~ 11266825 (-) True G111453
TU164548 lncRNA downstream 69752 11266003 ~ 11266214 (-) True G111452
XR_006252822.1 lncRNA downstream 71728 11261627 ~ 11264238 (-) True LOC122360619
XR_006252826.1 lncRNA upstream 93113 11480106 ~ 11481227 (-) True LOC122360676
TU164633 lncRNA upstream 100689 11487682 ~ 11488827 (-) True G111508
TU164642 lncRNA upstream 156923 11543916 ~ 11544332 (-) True G111516
XR_006252859.1 lncRNA upstream 175885 11562878 ~ 11569737 (-) True LOC122361126
TU164699 lncRNA upstream 275925 11662918 ~ 11666274 (-) True G111559
XM_043261674.1 mRNA downstream 452542 10857520 ~ 10883424 (-) True LOC122360812
XM_043261964.1 mRNA downstream 512777 10817891 ~ 10823189 (-) False LOC122361032
XM_043261963.1 mRNA downstream 515288 10817891 ~ 10820678 (-) True LOC122361032
XM_043261961.1 mRNA downstream 524949 10808337 ~ 10811017 (-) False LOC122361028
XM_043260630.1 mRNA upstream 50380 11437373 ~ 11453509 (-) True LOC122360214
XM_043261679.1 mRNA upstream 106106 11493099 ~ 11501213 (-) True LOC122360822
XM_043261174.1 mRNA upstream 211338 11598331 ~ 11614258 (-) True skap2
XM_043261171.1 mRNA upstream 232520 11619513 ~ 11630905 (-) False hoxa2b
XM_043261170.1 mRNA upstream 232520 11619513 ~ 11621949 (-) False hoxa2b
TU164545 other downstream 49534 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 452755 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 469538 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 587666 10746793 ~ 10748300 (-) False LOC122361037
TU163906 other downstream 2063361 9270971 ~ 9272605 (-) True G110974
TU164609 other upstream 23685 11410678 ~ 11411777 (-) True G111490
TU165859 other upstream 2267067 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 2847561 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 3522332 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 4081487 15468480 ~ 15496375 (-) False rps19

Expression Profile