RNA id: XM_043261588.1


Basic Information

Item Value
RNA id XM_043261588.1
length 3716
RNA type mRNA
GC content 0.53
exon number 19
gene id phactr4b
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24317482 ~ 24339788 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACATTGGCTTGGAAAGTGGAAGGAAGCATGAGATCGACGCTAGGTGACAGGAAAGGGTTTCTTTGAAGCCGAGAGGAAAAGCGGAAGGTTTAGGAGAACCTGGATTGCTGCTGCTGTCCACTGGGGTGCACCTGGGCAGGAGCTGCAAACGGAGGCCCTTTGGGGGCTGGAGCATGGGACAGACGTTCCCTCTAGAGACTGCACCTCAAAACTCCTGCGCACACTTGGATGATGAAGGTGATCACCAGCACAGCAGCACAGGGAGCGAAGGGGGAACGGCAGGGGACGGCACCCCTCCTCCCAAGCGCAAGGGCAAGTTCTCTACCCTGGGTAAGATCTTCAAACCCTGGAAGTGGAGGAAGAAGAAAAGCAGCGAGAAGTTTAAGGAAACTTCAGAAGTTCTGGAAAGAAAGATGTCGATGAGGAGGCCAAGACAGGAACTGATCGAGCAGGGAGTGCTTAAGGAGCTTCCTGACAATGAACTAGGTGAGGCCCATGGCCACAAGACACCTTATGTGAAGAATGGTCACACTCTGCCTGTAGGAATTGGTGGAGGTCTGGGGCTAGAGCAGATACACTCGCCCTCTGAATCTGAATTTAGAGTCAACCCTGTCTGGCTTCCAGAGCCCGATGATAAGAGAGGTCGTGGCCCTTCTGATGGGGATCATCATGGAGCACTGGGCCCTCGGGCCTCCAATCAGGATGAAGGCAGGAGAAGTGGTTGGTCTGTTGGGACGGAGGACTGGAAATCTAATCTGGCCTGGCAGGGAGATGATATCAGACATGGTGGAAGGCTACATGTTGAAATGGACAAGAGGCCTGGGCTAATGAAAGCCCCCTCTGAGGATGGGCGCAGGACTCGTCCCGAGCCGGACTGGAAGCCAACGCTTCCTCGCCACTCGTCTGTCGAAGAGGGAAGGGGAAGACAAGAGTCTGACAGCAGTCAGTACGTTCCTAACTCGGAGATTCTGAGGGACACACTGCGAGAACCTCTGCCTCCGAAGCAGTCCATCATGCCGCCCAAATGGCTGATGACATCCACCCCGGAACCTGGTGCTGACAGCTTGCCCCGCACCCCTGTCCACAACCCCGCAGCTgctttctcctcttcctctgcctcctccaactcctcctcctcatcagcTGTCAGCGCAGCTGGAAAACCACTACGAAACGTATCCTCAGCTGGCGCCAACACACAGGCCTCCAGCAGCGCTCCCCTTACCACCTCTTCAGCACCATCCTCTATGGGCAATGTCCCAGCCCAGCCCACCAAACAACCCCCTCCTCCACCCAAACCGATCAACCGTAGCAACAACCCCGCAATGTTGGCCTCCACCCTGCATGGGGGTGACGGCAGCGTCCCCCTCTACTGGTCCTGTTGGAAGCGTGAGGGTGACCATGACCTCTACCTGTCCCTGCCTGTCTACCTCTGCCGGCGGGCAGGAGGCATGCGCACAGCTGAACTCACACAAGGAGGTGTCAACCTAGTACCGGCCAAGCCCTCACCCCCTATGCCCCCAAAAAGAACCACGCCTGTCACCAAACGCAATGCAGAGGACTCCCCTCTGACCATTTCCTCCCTACCCTCCATCCTGTCAGAGGACATGAGGGCCAACATCCCCGGGGGTTACCAGCTGCCTCCTCCTCCCCCATCACCACCTCTCCCCACACACATTCCCCCTTCCCCACCACGGGCCCACACCCATCATCTCCTCCACCAACACTCCTATCCCTACCCCCTACCCCAGCCACTTCCTGTCCACTTTGACCCTCCCAGCCCTCCGGAGGAACCGCCAGCCCGTCAAGCTCCTGTTCCCTTACACATCATGATCCAGAGGGCGCTCAGTAGCCCAGGACCTGCTCTCCCACACCCAGATGGCTCCCAGCGTGCCCACTCACTTCTGTTTGAGACACCACCGAGACCAGGGCAGCCGCCACTGGCAGTCACCATCCAGCCTCTCAAACTGGATGAAGATGACTACTccgatgaagaggaggaggaagaggacgatgacgacgacgatgatgatgaaCCACCACCTGATCACCTCCCATCCCCTCATTCCCAGCCAGAACTTGAGCCTCGCAGCGCAGAGGTGCCTGGTGGGGACCTGAGCGTCAGCATCATCCCTGAAGGAAGCAATAGCAgcgaggaggaggaagatgaggaagatCAACAGCCGGAGGAGAGCGACTCAGACGGGCCCGTGCTGTATAAGGACGATGAAtcggatgaagatgaagaggacgACAGCCCACCAAGTGCTCTGGCCAGCAGGGTGAAGAGGAAGGACACGTTGGCGCTGAAGTTGAGCAGTCGGCCCTCTGCCCCAGACAGGCAGGCTCCTGAGAGGCAGGCCAAAGTGGAGCACACGGGTCTGTCGTGGCAGAGCAAGGAGCAGTGGGAGGCCATCCGCACACAGATTGGTACTGCACTCACACGgcGATTGAGCCAGAGACCTACTGCTGAGGAGTTGGAGCAAAGAAACATTCTCCAGCCCAAAAATGAAGCAGACAGACAAGCAGAGGTCAGGGAGATCAAGCGCAGACTCACCAGAAAGTTGAGTCAACGACCGACTGTTGCCGAACTACAAGCTCGAAAAATATTACGTTTCCACGAGTACGTGGAGGTCACATGCGCTCAGGACTACGACCGCCGTGCTGACAAGCCATGGACCAAACTTACTCCCGCAGACAAGGCTGCTATTCGTAAAGAGCTCAATGAGTTTAAGAGCTCCGAGATGGAAGTGCATGAGGAAAGCAGAATTTACACAAGattcCATCGTCCTTAATGGCGTCTTTTAACTGGAAAATGAAGCACTTAGCCGGTGGATATTGGGAGGAAATGGCTGTTTCTTTGGTGAGGAGCCTCAGGGTGTCGGAGCTCCTTCAGACTGCTTTTACTATGAATGTACTTCTTCAGATGCACAGGAACGCCTGGAGCATTCAGAAaccaatcaaaacaaacaaaacagaccGTTTCTCAGTCGTCCACCCACTGACGTGTGGGACGGGTGACCTCTGGGGGACAGATGCAGTATTTCTCCTGGACTTTAGGGGACCCATGTGCCAAGACAGAGAGACGATGAAGGACTTTAGAGGATTTTACTTGTGCCAATGGCAGATGTTCCTCTCTCTATACTCTCTGAATGgcctttttttctgcttttacttCGTATGATAAATGTTATTTCCTTTCAGGGAAGTGTAACaaagttaaaaatagtaataataatgatgtgacaataataaatacagtaatactacAGTAAGTGTTAGTTACTGAGCATAGCGGGGCAGACAGAAGAACTGCAAGAGTAAGGCCTGAGCCTGAATGttaattgtgtatttgtgtatgtttgtataggCTGCTGTAATTTTTCTCTTAGTTTGACTCTTTGGAACGTTCATAATGTTAGAAACTTTAAGGcacaagatttttttaattcataactTTGGCTTTGGCCCTCTTTATTCAAGACCGGGTTACAGATTCCCCTTACTTTGTGGTCTTCGCTGTTTGAGAGCAATAGAAGAAAATAGGATCAGATTTAGGTAGAATGTaagcatttcatatttcactaTTGATCTGCAGCAAAACTGTGATCTATTttgatctctcttttttttttatcatatcgCCTTTTGTAAAAGTGAGGTCCAGCTAGTTCAGTTTTAAGAAGTGTCCAAGTCGTGtttacagaatatttta

Function

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0048484 enteric nervous system development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:2001045 negative regulation of integrin-mediated signaling pathway biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0001843 neural tube closure biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0030027 lamellipodium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008157 protein phosphatase 1 binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K17594 PHACTR; phosphatase and actin regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171175 lncRNA downstream 128888 24187937 ~ 24188594 (-) True G115954
TU171157 lncRNA downstream 239615 24077631 ~ 24077867 (-) True G115939
TU171150 lncRNA downstream 260220 24049753 ~ 24057262 (-) False LOC122359981
XR_006252750.1 lncRNA downstream 260238 24048538 ~ 24057244 (-) False LOC122359981
TU171151 lncRNA downstream 270464 24045805 ~ 24047018 (-) False LOC122359981
TU171236 lncRNA upstream 24857 24364645 ~ 24368365 (-) False LOC122359997
TU171248 lncRNA upstream 74438 24414226 ~ 24473365 (-) False serinc2l
TU171247 lncRNA upstream 101539 24441327 ~ 24473365 (-) False serinc2l
TU171515 lncRNA upstream 481713 24821501 ~ 24823410 (-) True G116174
TU171520 lncRNA upstream 493748 24833536 ~ 24833958 (-) True G116179
XM_043260102.1 mRNA downstream 1350 24311489 ~ 24316132 (-) True rcc1
XM_043261532.1 mRNA downstream 118828 24196697 ~ 24198654 (-) True dnali1
XM_043260043.1 mRNA downstream 163060 24134883 ~ 24154422 (-) True rspo1
XM_043260240.1 mRNA downstream 230143 24084487 ~ 24087339 (-) True utp11
XM_043260779.1 mRNA downstream 501693 23811951 ~ 23815789 (-) True pnrc2
XM_043260265.1 mRNA upstream 24852 24364640 ~ 24369566 (-) True LOC122359997
XM_043260526.1 mRNA upstream 32315 24372103 ~ 24430886 (-) False LOC122360159
XM_043260528.1 mRNA upstream 32315 24372103 ~ 24430886 (-) False LOC122360159
XM_043260527.1 mRNA upstream 32315 24372103 ~ 24394405 (-) False LOC122360159
XM_043260530.1 mRNA upstream 32315 24372103 ~ 24394405 (-) False LOC122360159
TU171098 other downstream 642184 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 707641 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 793100 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 1383515 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 2228428 22087649 ~ 22089054 (-) False eny2
TU171647 other upstream 1328031 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 2039884 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 2467332 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 2470529 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 2470529 26810317 ~ 26812909 (-) False G116632

Expression Profile