RNA id: XM_043260337.1


Basic Information

Item Value
RNA id XM_043260337.1
length 3232
RNA type mRNA
GC content 0.42
exon number 23
gene id LOC122360042
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23081229 ~ 23089594 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gttaggtatgttttgaagctgggatgcttgtttatgctggtccttttcAGGTTTATGCTAGTCTtttgctggtcctttgctggacTTAAGGTGACTGGACCAGGTTATTGATTAGTTTATCTTTATATGCTGCCTGTGTAGTGGCCAGATTTCTGTGATGCCTTCTTTCTGAGGATTTAGTGTACAGCAGCAGATGTCCGCAGTCAGCCCTTATCTCTTTATCCCTGTGGATGGTTGAAGGCTGGAGTTCTCCCAGGCCTGAATTTTGTCTGGAAAGATGGAATACTGGTGGAACTTGTTAAATGTTTTCACGTTTTGGGAAGTGACACAGATGCCATCATGCTATTGTCTGGTGCGACATAAGCTGCCAGTTTTATGGATTATGCCACTCAGCGGAGATCCAGGGAGCAACTTTACGGCAGTGCTTCCTGCTGCTGAGTTAGCTCTGCATCATTTGAGCGAGCAGCCGTCTCCTTTAGGTGACTACGAGCTTCAGTTTCATCTTACAGACTCAGAGTGTGATAACAGCAAAGCGctcaaagcattttttgacACCATATTCAATGGCCCCAAACCTGTCATGATCTTTGGAGGGGTGTGTTCGTCTGTGACGTCTGTCCTAGCCCAGTCTTTGGAAGGATGGAACCTTGTGCAGCTGTCATTTGCAGTAACAGCACCTTCCATGGCCAACAAAAGAATATTTCCAAACTTCTTCCGCACTGTGCCATCAGACAGTGCAGTTAATGTGGCTCTGGTGAGGTTTCTCAGGCAGTATGGATGGAGTAGAGTTGGTACACTGACTCAGCGTGAGCAGAGGTTCACAGAGGTACAGATGGACTTGAGCAGACGTCTGGAGATGGCTAACATCCAGCTTGCAGAGGCCGAGAGCTTCTTTGAAGCCCCTtgtcatttttattattatttacaggaCAATGATGTGAGAATCGTCATTGCTCATTTTGATGTGAATTTTGCTGCTAAAGTCTTCTGCTGTGTGTATAATCTCAACATGTATGGCCAAAAGTACCAGTGGATTCTACCAGGCTGGACCCAGGCCAGCTTGTGGAATAACACGGGCTCCACAAACTGCACAGCTGAAAACATACTGACTGCCATAGAGGGATCCATCAGTGCAGATATTGAGACTCTTAGCACTAGAAACATCCGAGGGATCTCTGGCCGGTACAAGAAGGAGTATGATGAAAGACGACAGCTGAAGCGTCTGGGTGCAAACAAGTTTCATGGCTTTGCTTATGATGGTACTTGGGTAATTGCTAAAGTTTTAACGAGAGTCATGGAGACTGTGAGGTACAGAGAAAGATACAGCATCCATCGCAACTTTACTGTCACTGAGCAGGAAGTGGGACAAATGATTCTGGAGGCCATGGATAAGATCAACTTCTTTGGTGTGACAGGTCACATTATGTTCCAAAAAGGTGAAAGAACAGCCAATGTGAAGATTGCTCAGTATCAAGATGGAAGGGCTGTCGATATCGAAAAATATAGTGCCATTACAGATGAACTAGAGTTTATTAGTCCAATCAGATTTCAAAGGGATAAACCCACAAAGGACCGAACCCATGTGTACCGTCACAGGAAACGCATCAGTATATTTCTCTACGGTATTGTGGCGTTTCTAACTTTCTTAGGGATTTTTACAGCGTGCAGTTTCCTGGTCTTCAGTCTGAAACACCACAATCATTGGGCCATTAGCATGTCAAAACCTTTTATGAACTCTTTGATTATTCTTGGTGCTGTGTTGTCTTATTCCTCCATTTTCTTCATGGGACTAGATGGATCATATGTTTCTGATAGAGTATTTGAAGTTTCTTGCTCTGTACAAATCTCATGTTTATCTATTGGATGTACAGCAGCTTTTGGGGCCATGTTTGCAAAAACATGGACAATTCGATCATTCTTCAAAAACCACAGTGCTgaaaaaaagGCCACAAAGGACTATGGGCCAGTTCTCctgattatttttcttttgttaattgaCCTGAGTTCATTAATTTGTCTGCAATTTTTGGATCCTTTAAGGAGAACAGTGAAGGAGTATCACATAGTGgcTGATCCTCACggtcaagatttttttattcagcccTTTACAGAGCGATGTGAAAACACATACATGGGTTTCTGGATGGCTGCTTTCTATATTTATAGGGGTCTTATCCAGCTAAGCACCTGTTTCCTGGCCTGGACCACATGCCACATGAACATTCCTGCCATAAATGACAGCAGGAGTATCCGatacagtgtgtttgtgtcagtcCCAGTGATTCTGATTGGTACTTGTGCATCCATGCTGTGGCAGGAGCAGCCAAATGTGCAGTTCTTCATTGTGACCCTTGTGATAATCACATGCTGCTGTAGCACTCTTTGTATGCTGTTTATTCCAAAGATTATTATAATAAGGATGGGTCCTGATCCTGCATTCTTGTCAAGGAGGTTCCACCTCACACAGTGGTGTGGTGAATTAGAAATGGAGATTGGACAAGGCAAGAGGATCTTCATGAGACCGAACAACCCAGGAACATGTAGCTATGTGACTGACATGACACAAAACATCTTGTCTAGTCTGGACATTCTACTGTCAGAAAACCTAAACCTCaaacagcacattaaaaaaCTGGATTCTGAGATGGAGAATTTAACCAGGCAACTGAGAACTGAGCCTCACGTTATGGAGAACGTCATCATCAGAAGTTTTGTGCACAAAGCagtcaaagagaaatgtctgaCTCTCCCTGAAAGCTCCAACTATAAGAGGAATCTGCCGGAGAACGTTAACTCCCCTGAACGcATTCGCCGCAGACTGTCTCTGCAGTTACCCATTCTGCATCATGCCTATCTGCCCTCTATTGGAGGAGTGGACTCCAGTCCTCTTAATAGCCCTTTTGAAAGCCCTCGACATTCGCCAATGCCCAGGACATATGGAGTGCTGGTGACAGGATTGTAATTTACTGTACAGTAGGAGACAAAATAAACTTACATAATATTTCAAACCAGACTTActtatatattgtatacatgCATTATATCTGGTATAATGTAATGGAACTTGAATTATAATTTCAATCTAAAAATGGGaatattttaaggtttaaaaataaagctgcttcTAAATGACctgattatattttaagaaaagaacagacatgattattttcaaatggtagaaaaaatattatttcacctGTTAAAAAAGTTGCCATAGTTTCCAGATTAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170608 lncRNA downstream 3359 23074303 ~ 23077870 (-) True G115563
TU170613 lncRNA downstream 3359 23074303 ~ 23077870 (-) False G115563
TU170681 lncRNA downstream 7779 23072259 ~ 23073450 (-) True G115611
TU170664 lncRNA downstream 24699 23056095 ~ 23056530 (-) True G115601
TU170657 lncRNA downstream 28954 23050307 ~ 23052275 (-) True G115599
TU170695 lncRNA upstream 75599 23165193 ~ 23167940 (-) True G115621
TU170714 lncRNA upstream 95456 23185050 ~ 23189650 (-) True G115631
TU170758 lncRNA upstream 236614 23326208 ~ 23327893 (-) True G115669
TU171122 lncRNA upstream 726303 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 727306 23816900 ~ 23817100 (-) True G115911
XM_043261710.1 mRNA downstream 9040 23064745 ~ 23072189 (-) True LOC122360867
XM_043260164.1 mRNA downstream 98338 22977925 ~ 22982891 (-) True LOC122359931
XM_043260054.1 mRNA downstream 151312 22915967 ~ 22929917 (-) True LOC122359864
XM_043261867.1 mRNA downstream 180042 22892102 ~ 22901187 (-) True cdc42se1
XM_043261414.1 mRNA downstream 266134 22812569 ~ 22815095 (-) True si:dkey-23o4.6
XM_043260604.1 mRNA upstream 363 23089957 ~ 23096651 (-) True LOC122360196
XM_043260608.1 mRNA upstream 7673 23097267 ~ 23102702 (-) True LOC122360198
XM_043260610.1 mRNA upstream 13576 23103170 ~ 23109883 (-) True LOC122360201
XM_043260617.1 mRNA upstream 27904 23117498 ~ 23121209 (-) True rbp5
XM_043260612.1 mRNA upstream 32757 23122351 ~ 23139126 (-) True ptpn6
TU170599 other downstream 147262 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 992175 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 1112694 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 1277425 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 1376270 21704018 ~ 21704959 (-) True G115141
TU171080 other upstream 430214 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 498591 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 580304 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 1237113 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 2578225 25667819 ~ 25676410 (-) False LOC122361130

Expression Profile