RNA id: TCONS_00000079


Basic Information

Item Value
RNA id TCONS_00000079
length 693
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_000041
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1915967 ~ 1923253 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACTTTCTGGAACAATTGTTGCGTTCAGAAGAGCAATGAGCTGCCAAAACAATCTCTTGTTTTTATTCCTCTGTGGCTTCGCTGCGCTCACTGACTCAGCACAGACACGTACAGAACATTTACTAGAAGGAAAACCCTACAGCATTAATGGGAAaacaacaaacaatgaaaaaccTGCTGATATCAGATGGGCCTTTACCTACAGTGATGGAAACACAACTGAATGGAAAAAAGGATCCAAGAAAAAACCTCCAGCAGGATTAACAATAGAAGAAGACGGATCTTTACGATTTAAAAGTGTTCATCTGAGTAACACCGGCACATATAGATACAGTGCTTTTAATAAAGGTGGCACACAGATTGGTGATGAAACAGTGGAACTTAAAGTTTATGTGAAGGCTCCTAAACCTACTGTGGAGATCAACTGTACTGCATCTCAAGGAAATGTAATACTCCACTGTAAACACCTTGGAAACAATAAAGATCTGACGATATTCTGGTATGAAGACGGCACGAAGAAGCtagatgaaaaaaaatctgatctgaCCTTAAAATTGTCTGACGTGAAGAATAAAGAGTACGCATGCAATCTGACCAATCCTGTAAGCAGTGCACTAAGTGACAAAGTTTCAGCCTCATGTAGTTCCTTTCCTCCTACACTTTTTGGATTTGATTTTTGGATCATGATTGGG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-24 Orthologous to human CD2 (CD2 molecule).

Ensembl:

ensembl_id ENSDART00000131463

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000077 lncRNA upstream 16124 1898909 ~ 1899843 (+) True XLOC_000039
TCONS_00000073 lncRNA upstream 123444 1790772 ~ 1792523 (+) True XLOC_000036
TCONS_00000071 lncRNA upstream 184483 1730392 ~ 1731484 (+) False XLOC_000036
TCONS_00000065 lncRNA upstream 210087 1705130 ~ 1705880 (+) True XLOC_000035
TCONS_00000064 lncRNA upstream 224942 1690047 ~ 1691025 (+) False XLOC_000035
TCONS_00003015 lncRNA downstream 78463 2001716 ~ 2005632 (+) True XLOC_000043
TCONS_00002808 lncRNA downstream 100156 2023409 ~ 2023645 (+) True XLOC_000044
TCONS_00000101 lncRNA downstream 373338 2296591 ~ 2299546 (+) True XLOC_000048
TCONS_00003016 lncRNA downstream 1795413 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00000113 lncRNA downstream 2674807 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00000078 mRNA upstream 4586 1904419 ~ 1911381 (+) True XLOC_000040
TCONS_00000076 mRNA upstream 16119 1896737 ~ 1899848 (+) False XLOC_000039
TCONS_00000075 mRNA upstream 65863 1838164 ~ 1850104 (+) True XLOC_000038
TCONS_00000074 mRNA upstream 100307 1805294 ~ 1815660 (+) True XLOC_000037
TCONS_00000072 mRNA upstream 119135 1789357 ~ 1796832 (+) False XLOC_000036
TCONS_00000080 mRNA downstream 17778 1941031 ~ 2000357 (+) True XLOC_000042
TCONS_00000081 mRNA downstream 101832 2025085 ~ 2027100 (+) True XLOC_000045
TCONS_00000082 mRNA downstream 178288 2101541 ~ 2129631 (+) False XLOC_000046
TCONS_00000086 mRNA downstream 178288 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000085 mRNA downstream 178288 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000069 other upstream 122596 1718611 ~ 1793371 (+) False XLOC_000036
TCONS_00000070 other upstream 183641 1719207 ~ 1732326 (+) False XLOC_000036
TCONS_00000068 other upstream 192810 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000067 other upstream 197440 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000061 other upstream 340404 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000094 other downstream 267447 2190700 ~ 2214397 (+) False XLOC_000046
TCONS_00000098 other downstream 349008 2272261 ~ 2288773 (+) False XLOC_000048
TCONS_00000099 other downstream 352352 2275605 ~ 2275742 (+) True XLOC_000049
TCONS_00000100 other downstream 363596 2286849 ~ 2299546 (+) False XLOC_000048
TCONS_00000102 other downstream 378705 2301958 ~ 2302623 (+) False XLOC_000050

Expression Profile

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