RNA id: XM_043261561.1


Basic Information

Item Value
RNA id XM_043261561.1
length 3741
RNA type mRNA
GC content 0.42
exon number 9
gene id tapbpl
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8938547 ~ 8944648 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAGTGAAAGTACATCAGCTACTGAATGTATCAGAGTTTCGGTGTTAGCCTAGCAGAGAGCTGCCTCGTCTTAAAATGCGtttctcctcatttaatgcGGGCTAATCATATTTAGACATACTATCATAAGCGACTTCTAGAAAAATCATTTGCTGTCTGTCAGGAGCTGCTCGGTGATGTTTACCATCCTAGTCTTCCTTTCGTTGGTCTGTGGGCTGGAGGGGGCGGATGTGGTCCTGTCCTGCTCTCTGATCGAGGAAGGGGGCGGGACGGGGGGCATGATGAGCGGGGCGATGTTCACGCGCACTCCCTCCACTCTCGTCTTCAGGGATCTTGTAGGAAATCAGGGTCTGTCAGAGGAGCTCGTGACCCCGTACGAGCCCCCCGAGACCCCCAACGCTGACGACCTCATCTTTGAGTTGTCCTTGCGATCCATTCAGATTCCTAATGCAGACCTGCTTCTTCATGCTGATTGCAATGAACAGGAAGTGGTTTGTGAGGTCAGCCGTTATGTTCCTCGTGGTGCTGATCTGGATTCTCTTCCTGCTCATTTCATTGGCTCGGTTCAGCTGGATGGTGGCGGCCTCAGCCTTACTCTGGTGCTGCAGACCCTTCACAGTGAGACTCAGTCTGACACACAACCACTCATACAGAGTAAACTAGACCTGcctctcagccaatcaggaaCGTTACAGACAGAggTGGTGTTCGTGGTGTTTTCGCGCGTGCCGTCCATCGCGGCTCCGATCGGAGGTGACGTTCTGCTGGACTGTGGCTTCAGACAGAAGGAGTCCGTCCCTGGACAGGATGTGGCCCTGGAGTGGCGCATACAGCACAGAGGAAACGGCCGCAAAATACTTGACATGAAAGCCAGGCAAACCGAGGCAGACGTGGGACAAGATCTATTCGTGGACCGGGAAGGCGCGAGCGCTGAAGCAGATCTTCTGGTGAGGGACGGTAACGCGTCTCTGACTCTGAGGAGGTTGAAGGTCTCGGATGAAGGCACATACATCTGTACTGTGGGCTCTGGGGAGTTTCAGACTCAACAGATCGTGCACCTGCACATCACACAACCTCCTCGTATCACGCTGTCTGAGGAGAAATTGATATTTCAGGACACGACACCCCAGAAACTGAGCTGCCATTGTCATCGCTACTATCCTCTGGACGTGCAGGTGGAGTGGTTTTCCCAGGAGCCCTCTGAAGAAGAACCCGTCTCTTTGTCGAAAGACTCCTCCCTCTCCAGTCACCGGCAGCACAGCGATGGAACGTATTCCCTCTCCTCTCACCTCACCCTACGACCCGGAGAAAACCCACCCGGGACCGTTATCACCTGTAGGGTGTCTCACTCCACCCTGGAAACGCCGACTGACGTCGCTCTGACTGTGGACAAACCTGAGCCACAAACAGTCTTGTGGACAATAGTCTTGATGCTGGtgatatcagttttttttttgtatcaagCATTCAAAGGTGCAGagAACTGAGGACCAATGTTCTGCGTGAATTCTCGGAAGGAGCCATCTTACGTTTTTCACTTCACTTGTCTTCACTGgagttcatatttttattcagtcatGGTACATCTGTTTAATAGAATCTATTCCTTGCCTAACTTATtccataaatgtaaaatgcattctaTATTCACAATGTTCTGATCTGTTGGATGCTGGTTATTTGTCCTCATTTTCCTCGGGgtgtgtgaaataaaaacaacagatacGGTTTTGTCGATGGCTTTATTAGCATCATTAAAGGATCAGGGGCATATAAGCATGCTGTTTATGCCATTAAAATCAAACTCTGGCATCGGAGCTAACGCCATTACCCCTCTGTTATGCTATATGCTCTCGTTAATAATTTGTCGTCatataaggaaaaaaaagacaagtctAAGTCTTgaaacaacagaacaaaatataaaagtctGTGCTGACGAAGGAATGTGAATCAACAGCAGTAAGGAATGTGAAAAACAACAGTTGTAAATTGCATGGCAGTATAGATTATTGTTTATGCTCTGTTTGCACTGATTATCTGTGATTTTCTGTACGTTTTAGTACATTTTGGCAGGCTTGTAGCATTCACATCTTGTTCCCGAATGAGGCTTTTCCACAGAACAGGAAAATGAGGCTTATAGCAGGCAGTCGatagtaataattaaacacATCACACATAAAACAGTCCAACGGTGGAATTATTCTGCCATGCAAGTCAAAAGAAATAccttatatgttttttttgtatgtgtacaAGTTAtcatttttcccttttattaCAGTTCAGgcgtttatttttgttatttattttctaaatctGTGCTcctcggtaaaaaaaaaaccccacagctGTTCTCATAACTGATCTGtatatttgtgctgtttttctggAAATGTCTTACGTACACATACATATTGGGAATAAAAGAAGTCTGTGGATGATGGCTCATGAATCTCGTCTCGATCACTGGGTTGGGTTAAGAGGTTTTAGATTTAGTCGATATCAATTTATAAAAGTTCTCCAAAAGGTCAGATATAAGCTTTGgcaaaacagagacagaaaaagatgTCTAACCTGACGTCGCTACTCGTCTATTTCTCTCTCACATTTTGACAAGCTCTGTTACATACACTAACGTTTAaaagtttgctttaaaatgtttctcatATTCtgtgaaaacagtaatattgtgaaatattattacaatttaacaaaattctgtattctgttttaggttacactttattttaaggtgtgctTTTTTACGCAAGTTGCAtatacttactattataataacaacaaatgatTTCATGCAAGTAAAtcaaaaagttaattaataCCAGTCAGTCACTGTAAcaaaaacaccttaaaataaaatctaaccctattttaatatatttcgatctgtaattaaaaagtaattcatgGTCAAACCTGAGTTTTTagcaataattacatttttaattttatttctgaaggatcatgggacccgttttttttcttagcatTAATtcgattaaaaaatacattaaaaactgtaaaatattattacgttttcgattttttaaatattttaagcttAAATTTATTCCGGCAATATCAGCATCGTTTATTCGGTCTTCAGTCagacatgatccttcagaaataattttaatacgcCGATTCAGTATTCAACCAAACgttcatattattataaatgtctttgtagAGACCGTGCTTAAAAATGAAGGTTAACATTATTGTCCCTATTGATCAAATGAAcgcatccttgatgaataagagtattattttcataaaactcctcaaacttttaaacagtattgtaagcgctctctctctctccttttttatCTTGCTTTTTATGTTGTTTCCTTCCTTGCCTCTTCTACTTATTCTaagtctgtttttcttctgctcTGTCTGTGCATTCATGTATGAACGTCTGCGTGTCTGCAGAAGGTTTTAATAATGCAGGAGATTCTGGAAGgcagggaaagagagagagagatagagagagagaaactgaaaTGTGCTCATTCTGCTGGAGAGGAGAAAGGAGAGCAGATTTCTGTGCGTTGCTGTCACGCCAAGTTGCAAAATGACTTAACGGAGAGACCTCGGGATTGAAGCGTGAAGGATGTGGAAAATGGGCAGAGCGTCACGACTGTGTTTTCTTCATCCACTCGTTCACTTTCTTGTTCGTTTTGCAGGTGGACCGGCTCAAGAGAAGAAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163682 lncRNA downstream 92554 8845525 ~ 8845993 (-) True G110807
TU163638 lncRNA downstream 347913 8589898 ~ 8590634 (-) True G110773
TU163610 lncRNA downstream 386995 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA downstream 386995 8547782 ~ 8551552 (-) False G110753
TU163331 lncRNA downstream 699371 8237758 ~ 8239176 (-) True G110548
TU163727 lncRNA upstream 56139 9000787 ~ 9001428 (-) True G110836
TU163733 lncRNA upstream 59890 9004538 ~ 9005206 (-) True G110842
TU163741 lncRNA upstream 62649 9007297 ~ 9007532 (-) True G110849
TU163744 lncRNA upstream 86487 9031135 ~ 9031449 (-) True G110852
TU163808 lncRNA upstream 182037 9126685 ~ 9191339 (-) False G110897
XM_043262059.1 mRNA downstream 76018 8857464 ~ 8862529 (-) True LOC122361100
XM_043262104.1 mRNA downstream 93723 8841494 ~ 8844824 (-) True zgc:174935
XM_043261662.1 mRNA downstream 102945 8834699 ~ 8835602 (-) True LOC122360801
XM_043261271.1 mRNA downstream 104667 8821665 ~ 8833880 (-) True si:dkey-17m8.1
XM_043260418.1 mRNA downstream 133434 8796757 ~ 8805113 (-) False ccdc106a
XM_043261997.1 mRNA upstream 1523 8946171 ~ 8957450 (-) False grhl2a
XM_043261996.1 mRNA upstream 1523 8946171 ~ 8957449 (-) True grhl2a
XM_043260904.1 mRNA upstream 16406 8961054 ~ 8996986 (-) False ncalda
XM_043260907.1 mRNA upstream 16406 8961054 ~ 8996986 (-) False ncalda
XM_043260905.1 mRNA upstream 16406 8961054 ~ 8996986 (-) True ncalda
XR_006252934.1 other downstream 290992 8647414 ~ 8647555 (-) True LOC122361375
TU163623 other downstream 302325 8633350 ~ 8636222 (-) True wu:fj39g12
TU163343 other downstream 621862 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 636302 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 721952 8216029 ~ 8216595 (-) True G110544
TU163829 other upstream 201282 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 326323 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 1802145 10746793 ~ 10748300 (-) False LOC122361037
TU164396 other upstream 1917303 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other upstream 1917303 10861951 ~ 10866428 (-) False LOC122360812

Expression Profile