RNA id: TU182518


Basic Information

Item Value
RNA id TU182518
length 3083
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G123511
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 1376817 ~ 1379899 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggagcaggggtatatttgtagcaatagctaaaaatgcattgcatgggTAAAAATGATCGATGGCCTTTCAAGGAAACTTTAGAGGTAGCTCTAGAGGTAGCTATGGGGAACGCCTTTGGCATGACTGGGGTCTATACATCTAAACACAAGCCTATGATGTCACTACCAGCTCAACCGCAGTACAAAAGGGTGCAGAGAGAACATGTCACCTTCTTCATCTTCACTGCCATTATGTTAGCAGAAAGCCAAGCATGACTGGAGTTCATGTTCTCTTGCCAGAGGCTTTGCTCTGATACCCGCAGTTTCACACGGCTCGCACGTTGTGTGTGGTGAAGAACAAGCTCGTTCAGCTCTCAAAGTGCTTATTTCTTCGTGGATAAGCATGAGTTAAACATGCTCTACTCACGAGGAGTTGGGTTCTGCTGATTGTGATGCATTTGGTGAGTGTTTCACTATTTTCTCAAGTTTGTGGACATCGTTTGCAAGCTTGTGCCGCTTGTAGGAGTACTGACACGTTCATGTAGAGGCAGTAGAGTGTTTCTCTTGAGGGTGACCGTGTTACATGTTGCTGTGAGATTTCTCTGCCTGTTGCTGGTGGGTTCCGGTTTATGGGCAGAGCATGGAAAGGACCCGATGGGAAATCTTTCCCTATCAGTATATTTTTTCCTATGGTTTAAAGTTCCTTATACATAAAGAATTggatatacaatatattatactGAATCCAATGTGGATATCTATATGATTTTGGACATGTagtcatatattcatattttgtccTCATCAGGTAACCACGTTATACTGCTGCTCTGGAGCTTTCCTGCTAGGGTGATGCTCCTCACCTATAAATAATAGGTGTATCTGGGTTTTCTGCTTCCTAGAGGCAGGAGCTCGATTCAATCCCGACTTCTGCCTCCTGGATTAAGCTAAGCATTTCTTGTCTCACCCAAGAGGGACACCTATGAGCATGTTTTTCGCAACTGAGCATCTAAGTTCTCCTCTTGTTCTATGAGTTTTGGAGGTCCTATGGGTAGCCCCTCCAGGTTGTTAGGCGTCTTTCTGCCCTCCCTGCTCTTATAATTGGTGATAGTTGACTGATGGTGATGGTAAAGTGGGTACTTAGTGCTTTCTTTGGGTATACTGTTACCCATAGCAACCTCTAGAGGACACAGTACCAAGTTCCCTTGAAAGGGAATGTCTCAGGTTACGCATGTATTCCCTGAGAAAGGAACGAGACACTGCATCCCTTCTTTTTGCCATGCTTCAGATGCAGGCTTCAGAAAAAGCAACTGACTTGTTCTCTCTCCGTCTTTTTATACTATGATTGCACCGGTAGTGATGTCATAGGCTGTCGCCAGCCAGTGTTACTGCTGTGTTTAGATGTATGCTTCAGACACCTGTCAGGACATCCCCAGTGCGACCTCTAGAGGATGCAGTTCTCGTTCCCTCCTTAGTGAACCATGGCTAAATACATAAACttcacttaatatcctaataagtaatgtgaaaaagaaaacacacccttatttatttccataacagtacattaaaaaaaacacagtcctCTTACAAATTTGTAAGATAAAACCTGAACAACAACACATGACATCACGctgtgtcatttatttagaaCAAATAAAGCCAATATGGAAAAGCCATGGATGAGAAACTAAGGGCGCCTTATTATTCAATTGGTTTTAGAACCACTTTTAGCTGCAGCACCTTGAAGCaatcattttttgtgtttgtgggcACTGGTTATGGATTTTtgctacattttctttttcagccaCTGCACTGTAGATCTGCTGGTGAGTCACctcactttcactttcaaattgtttaaaaattgcCTTTCCGCTATTGACTgttgattatttaaatgaaaataaaataaatataaaatgaagtaaatgaaattctataaataaaagtagtCTCTTGTAGCTTATTACTATTTGGTATTGGGAAACGGTCTCTGTGTGACGTGAATTTTATCATCAGAATACTATCCGTGTACTGTGCATTCATCATCAGATTTCTGTAACCACAAAGTGGCTACACTGGCCAGGGCCGTTGTTTCACAGtagaaaactaatatttgtggaAAAACAGCACAGACAATAAACTAAAGATAAAGCTTTTTATGTGTTCACCGCCTGCATTCATTCTCAACGTGGAGCATACTTTAAGGCTACACATTCGACTGCAcgtgtatacatatgtgtacaAAAACTAAGTATATTTTGAGCTTAATCCTATTTTCTTCAGGAGACATTACTacaaactaatattaacaacactgcactggcttaAAGAAcgacattattttattttattattttttttaaatgggcaCCTATTATGCAAATTCAACTTACATAGTGTTTagatataaatgtgtgttggcaGCGTGTAAACACTACAATCAGACAAAACTCCCACTCTTccttttttattctcttttaaaCCAAATCACTGCACTGCCCTTTTATGGAGACTGGGCTGGAATATGTAgctcaatgcatttaaattgatacacaccaaaacaactattttttttagacacaccccaaaaatgacattttctagCTGTTATAATAAATGCTCTGTGGGGTATTTTGGGTGAACCTTCACAGAAACATTCTTGGGACATATCTTGGGAAATATTACATCTTGTAAAAAGGAGCATAACAGGTGCCCTTTAACCCTAAATACTACactaattgaaatataaataataaacatattagaattgtatattttaaatggttattcATGGATGATAATTATTGcgcattttatttatcatacaCCTAGAAGTTATTTTTGAGACAGTTACCTATCTGGATTCCGTGttcaattattcataatttcctATACAATCTGACTGTGGATTTGTGGAGCCCAAACAGAGTTATGTAACCTTTCTAGCCTAAAGAGTAACAGCAACTCTTTTCTGAGGTTCTCagagatttgtttttgtcactaaacACATCCACAAACATGGTGGATGGACTCTTAATTTCACCTTTAAATTAACAGTACAGATCTGCAACATTGGgtcatttttatcaataaaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182496 lncRNA upstream 126769 1243362 ~ 1250048 (+) True G123493
TU182499 lncRNA upstream 131189 1243362 ~ 1245628 (+) False G123493
TU182490 lncRNA upstream 139896 1231766 ~ 1236921 (+) True G123491
TU182491 lncRNA upstream 139896 1231766 ~ 1236921 (+) False G123491
TU182492 lncRNA upstream 139896 1231766 ~ 1236921 (+) False G123491
TU182515 lncRNA downstream 18497 1398396 ~ 1399790 (+) True G123508
TU182513 lncRNA downstream 21197 1401096 ~ 1403972 (+) True G123507
TU182539 lncRNA downstream 122667 1502566 ~ 1510640 (+) True G123527
TU182613 lncRNA downstream 208855 1588754 ~ 1590287 (+) True G123587
TU182631 lncRNA downstream 236244 1616143 ~ 1619425 (+) True G123599
XM_043264584.1 mRNA upstream 777 1369493 ~ 1376040 (+) True nucb2b
XM_043264739.1 mRNA upstream 323016 1045211 ~ 1053801 (+) False tmem123
XM_043264738.1 mRNA upstream 323042 1045211 ~ 1053775 (+) False tmem123
XM_043264737.1 mRNA upstream 328826 1045194 ~ 1047991 (+) False tmem123
XM_043264833.1 mRNA upstream 331690 1040136 ~ 1045127 (+) True tbcb
XM_043265139.1 mRNA downstream 29442 1409341 ~ 1413595 (+) True lmo2
XM_043264181.1 mRNA downstream 42642 1422541 ~ 1437003 (+) True alx4b
XM_043264415.1 mRNA downstream 232702 1612601 ~ 1614722 (+) True c18h11orf58
XM_043216659.1 mRNA downstream 343723 1723622 ~ 1725947 (+) True rcn2
XM_043216654.1 mRNA downstream 346340 1726239 ~ 1736383 (+) True pstpip1a
XR_006253178.1 other upstream 322082 1045211 ~ 1054735 (+) True tmem123
XR_006253179.1 other upstream 328826 1045211 ~ 1047991 (+) False tmem123
XR_006253182.1 other upstream 553640 814764 ~ 823177 (+) False LOC122362993
TU182087 other upstream 1267985 108369 ~ 108832 (+) True G123243
TU182587 other downstream 185527 1565426 ~ 1571931 (+) True G123568
TU182722 other downstream 621887 2001786 ~ 2002290 (+) True G123664
TU183022 other downstream 922627 2302526 ~ 2305578 (+) False plin1
TU183320 other downstream 2132067 3511966 ~ 3554690 (+) True tmem170a
XR_006253139.1 other downstream 2339989 3719888 ~ 3743756 (+) False nrn1la

Expression Profile