RNA id: TU182598


Basic Information

Item Value
RNA id TU182598
length 1430
lncRNA type read_through
GC content 0.40
exon number 2
gene id G123576
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 1693116 ~ 1739132 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attataCTGAGAggtgttcaaaaacatttaattttcctTAAGAGAGACAGAATTACAGCAAACATCGATTCGGTCAGGTTAAGATAACCAATAAATAACTGGCCATGTTAATAtccatttataatgtatttttaacagtCATAAAACAGTGAATAGGATCACTATTTGCAATGTGAGTGATGACAATCTTatacatctttttaaaaatgaacttatAGATAATTCAACTGAGCTCTGGCAGTAGCTTTTAGCCACAGGTGCTGTTCCCTTTTTAAAGAGGGTTCATTAGACTAATTCATTggtgggtttaaaaaaaaacaaaaaccagctTGACCAACTCTGATCACACTACGAGGAGTACAAACTACATTATCTTACAAAAcagggccttttttttttttttttttttttttttttttttTGTCAActtatgaaacatttattttaatttcgaAATTACAAGCttatttcaccatttttccTCCCTATGTACATTCCTCTGAAATAATACACTGTTGACCAGTTTGACATACCTACGTGTTATCCAAACTAACTTTAAACTCTATATATTACTAGACTAGTAATGTTCACACCGTAAGCAATGGAAAAAGGAGAAAACGAAGATAAAGAGTTCAGTAAATGGCAGGTAGTGCGTCTAGAGCATCCCCCAAACCTCTTTATACTTTACATGTGAAACCCAGTTGTGAACATTTCGCTGTACCCACAATGCCGATCAATCTTGTGTGGTCAACCCAGACCCGTCTCTCACACTGCCACTGTCCCCGAGCAGCGGACTGGTGATGGGTGACATCCGAGACAGCGGGAAACCACGAGTCCAAAGCATTTCCCCATCCCAACCGTTTTACCATCTtggtatttgtaatatataactaAACCGTACACATAGTGCAAACTAACAAATGAGGAAAGCATACATTCCACATATTATTCCATACGATATCTGCATCTTCCACTCCATATAATAGAGACAAGGAAGAGAAAATGTTCACTTTTATTGTGTGTTAAAGTCTTCTCAACGGGATTAAAAACGGGCCGTCTGCCATTTTGCAGTCTGGCCCGATGCCTTTGAGAGAAAAGCAAAGGTTTGAATTAAAACGCGGTCATTTTCAGTGACgtgtactgtataaataaatagtatgcGCTTTTGTTTCACCCATCACCAGTGCAACGTGTGAGCAAACCCTGTGTAAGGTGTGTAGAAAGAGATAGATTGGGCGTATCCAAGTGTGCCCCCTCACGCCGACAGAACCCTGagcccagtgtgtgtgtgtgtgtgtgtgtgcatgaaaagagagagagtctgtcTGCTAGGTGTTTTCATGCATACGTCCCTCCGGTGATGAGGAGCTCGTAAGCCGGGTCTCGGCTTCTGCGACACAGCACCACACAAGCGCACAGCATTCCCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182631 lncRNA upstream 73691 1616143 ~ 1619425 (+) True G123599
TU182613 lncRNA upstream 102829 1588754 ~ 1590287 (+) True G123587
TU182539 lncRNA upstream 182476 1502566 ~ 1510640 (+) True G123527
TU182513 lncRNA upstream 289144 1401096 ~ 1403972 (+) True G123507
TU182515 lncRNA upstream 293326 1398396 ~ 1399790 (+) True G123508
TU182663 lncRNA downstream 19113 1758245 ~ 1759829 (+) True G123622
TU182662 lncRNA downstream 19162 1758294 ~ 1759869 (+) False G123622
TU182693 lncRNA downstream 119876 1859008 ~ 1918466 (+) True G123642
TU182694 lncRNA downstream 180705 1919837 ~ 1920891 (+) True G123643
XR_006246962.1 lncRNA downstream 315388 2054520 ~ 2061225 (+) True LOC122323174
XM_043264415.1 mRNA upstream 78394 1612601 ~ 1614722 (+) True c18h11orf58
XM_043264181.1 mRNA upstream 256113 1422541 ~ 1437003 (+) True alx4b
XM_043265139.1 mRNA upstream 279521 1409341 ~ 1413595 (+) True lmo2
XM_043264584.1 mRNA upstream 317076 1369493 ~ 1376040 (+) True nucb2b
XM_043264738.1 mRNA upstream 639341 1045211 ~ 1053775 (+) False tmem123
XM_043216757.1 mRNA downstream 8143 1747275 ~ 1754898 (+) True si:dkey-24l11.2
XM_043216693.1 mRNA downstream 16528 1755660 ~ 1756685 (+) True ch25hl1.1
XM_043264156.1 mRNA downstream 39481 1778613 ~ 1789240 (+) True slc28a1
XM_043264157.1 mRNA downstream 63229 1802361 ~ 1815297 (+) True malt3
XM_043216679.1 mRNA downstream 77270 1816402 ~ 1907583 (+) False LOC122323046
TU182587 other upstream 121185 1565426 ~ 1571931 (+) True G123568
XR_006253178.1 other upstream 638381 1045211 ~ 1054735 (+) True tmem123
XR_006253179.1 other upstream 645125 1045211 ~ 1047991 (+) False tmem123
XR_006253182.1 other upstream 869939 814764 ~ 823177 (+) False LOC122362993
TU182087 other upstream 1584284 108369 ~ 108832 (+) True G123243
TU182722 other downstream 262654 2001786 ~ 2002290 (+) True G123664
TU183022 other downstream 563394 2302526 ~ 2305578 (+) False plin1
TU183320 other downstream 1772834 3511966 ~ 3554690 (+) True tmem170a
XR_006253139.1 other downstream 1980756 3719888 ~ 3743756 (+) False nrn1la
XR_006246974.1 other downstream 3001736 4740868 ~ 4740965 (+) True LOC122323235

Expression Profile