RNA id: TU183973


Basic Information

Item Value
RNA id TU183973
length 544
lncRNA type inter_gene
GC content 0.28
exon number 2
gene id G124544
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 5011405 ~ 5183537 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtttatttgcaaatacaaattactgtttttttaacagttaaaaaaacagtaatttgtatttgcaaataaactcttcaaatAAATTCTTACATAGTCCATAGGCAAGGAAATATACAAATTagtaaaaagaatttaaaaagaaaaatgtgagcAGGAATTCTAAcacaattaaatgattaataaaatgtctgAGGCCTTGAGCCATGTGGAAAAATAATCATACAACTACTGTATATCTCAAGTAAATCTTGTTCTTCCACTAGCATAAGTATAATCAAAGTATAAGTTAGCATGCATGCAACACTGACAAACATTGGCAAATATACTATGATTAAACACAATCAAAAAACAAAGCTAATAGTAGCATCACATAAGGAATATACAATTTTAGGGTTAATGTATTTTCTGGCATAAAAGAGCTAATGAATGAGGTTGTTGACTTGGACTATGCTGCAGGCAACTCCATATATGtacaccaaaaaaacaaacctagCATTGTTTTTACAATCAGTtgctttattacatttgaaaattctTTATATCA

Function

GO:

id name namespace
GO:0004962 endothelin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183959 lncRNA upstream 103236 4903768 ~ 4908169 (+) True G124533
TU183923 lncRNA upstream 254786 4756230 ~ 4756619 (+) True G124506
TU183922 lncRNA upstream 256219 4754738 ~ 4755186 (+) True G124505
TU183920 lncRNA upstream 258836 4752363 ~ 4752569 (+) True G124503
TU183919 lncRNA upstream 260240 4749922 ~ 4751165 (+) True G124502
TU184034 lncRNA downstream 171176 5354713 ~ 5354980 (+) True G124595
TU184042 lncRNA downstream 308799 5492336 ~ 5494133 (+) False LOC122363125
TU184043 lncRNA downstream 311652 5495189 ~ 5495644 (+) False LOC122363125
TU184052 lncRNA downstream 440369 5623906 ~ 5624977 (+) False LOC122323196
TU184061 lncRNA downstream 476369 5659906 ~ 5660233 (+) True G124622
XM_043216538.1 mRNA upstream 215569 4759628 ~ 4795836 (+) True LOC122322928
XM_043216673.1 mRNA upstream 267495 4740143 ~ 4743910 (+) True rpl4
XM_043216670.1 mRNA upstream 275938 4726450 ~ 4735467 (+) True lctlb
XM_043216674.1 mRNA upstream 285793 4723039 ~ 4725612 (+) True snapc5
XM_043264727.1 mRNA upstream 422703 4585189 ~ 4588702 (+) True aagab
XM_043265035.1 mRNA downstream 131385 5314922 ~ 5318185 (+) True LOC122363106
XM_043216554.1 mRNA downstream 147666 5331203 ~ 5332855 (+) True LOC122322945
XM_043216555.1 mRNA downstream 163627 5347164 ~ 5350497 (+) True LOC122322946
XM_043216556.1 mRNA downstream 186548 5370085 ~ 5381964 (+) True LOC122322947
XM_043216536.1 mRNA downstream 201558 5385095 ~ 5389352 (+) True LOC122322926
TU183924 other upstream 218154 4759637 ~ 4793251 (+) False LOC122322928
XR_006246975.1 other upstream 268970 4742307 ~ 4742435 (+) True LOC122323236
XR_006246981.1 other upstream 269754 4741554 ~ 4741651 (+) True LOC122323242
XR_006246980.1 other upstream 270081 4741255 ~ 4741324 (+) True LOC122323241
XR_006246974.1 other upstream 270440 4740868 ~ 4740965 (+) True LOC122323235
TU184016 other downstream 42271 5225808 ~ 5226057 (+) True G124577
TU184019 other downstream 45026 5228563 ~ 5229946 (+) True G124580
TU184037 other downstream 211358 5394895 ~ 5395312 (+) True G124598
TU184051 other downstream 439916 5623453 ~ 5629653 (+) True G124612
TU184110 other downstream 792673 5976210 ~ 5979282 (+) True G124661

Expression Profile