RNA id: TU184052



Basic Information


Item Value
RNA id TU184052
length 861
lncRNA type sense_over
GC content 0.33
exon number 2
gene id LOC122323196
representative False

Chromosome Information


Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 5619470 ~ 5624977 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCATATTCTGTGCTGTATGGATCACATTTATTCCAGCTTATGTCAGCTCTCCAGGGAAATTTACTGTAGCTGTGGagatttttgccattttagcttCAAGCTTTGGCTTaagtttctgtatttttgctcctaagtgttttattattgtgtttagGCCAGAGCAGAATACTAAAAAACACTTAATGGGTAAAGTACCATCAGCCAACTAAAGCCACCTAAGACAAGGACAGCTCTCATTCACATGAAATGTTACAATATTGCGATGTATGAAGCATCTTTCTGAGTTCAAagactactttttaaaatataaccatTTTATAAGAGAAAGAAATATCACTATCGCCCATATGCAAACATCTCAGATTCTCAAAATTGGTTGCCAGTGAAAtgtagtgtatgtatatacataacaGTAATATTTGCTCACCAAGCCCACATTCGTTTTGAACCAAAGTACAACAAAAATAGtcaaatgttgaaatatttcactattttaaaaatctgttttctattagaatacagtatatttttaaatataattaattcctgtgattTCACTCAATTTGTTGTAACATCATTCCAGTCACtatttccttcagaaatcatagtAATGTTCTGATTTGCtgttgagaaaaataaataaataaaataaagtaaattatacATAGATGTTTAACCTTCTAGTATTGTTCTGGTAACCTGATTGGATTGATGTTTGTGTTACGACCCATTGCCTGTTTTATCGTCTTTTCTATCTGGAAATCCCTTGAACTTGTTTGCGGATCTGACTGCCTTACTGTTAACAAACTTCTGCCTGTTGTATCTGACTATTCTATTTTGGATTGTCCCAATAAACTTCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184043 lncRNA upstream 128262 5495189 ~ 5495644 (+) False LOC122363125
TU184042 lncRNA upstream 129773 5492336 ~ 5494133 (+) False LOC122363125
TU184034 lncRNA upstream 268926 5354713 ~ 5354980 (+) True G124595
TU183973 lncRNA upstream 440369 5011405 ~ 5183537 (+) True G124544
TU183978 lncRNA upstream 566068 5056750 ~ 5057838 (+) True G124547
TU184061 lncRNA downstream 34929 5659906 ~ 5660233 (+) True G124622
TU184121 lncRNA downstream 396264 6021241 ~ 6021636 (+) True G124672
TU184122 lncRNA downstream 398682 6023659 ~ 6023991 (+) True G124673
TU184126 lncRNA downstream 403546 6028523 ~ 6028845 (+) False LOC122362599
TU184162 lncRNA downstream 602504 6227481 ~ 6230584 (+) True G124703
XM_043216881.1 mRNA upstream 12998 5607481 ~ 5610908 (+) True LOC122323189
XM_043216883.1 mRNA upstream 18909 5601441 ~ 5604997 (+) True LOC122323191
XM_043216885.1 mRNA upstream 22845 5597909 ~ 5601061 (+) True LOC122323193
XM_043216884.1 mRNA upstream 35900 5584604 ~ 5588006 (+) True LOC122323192
XM_043216613.1 mRNA upstream 51737 5567174 ~ 5572169 (+) True LOC122323002
XM_043216882.1 mRNA downstream 961 5625938 ~ 5629801 (+) True LOC122323190
XM_043265088.1 mRNA downstream 9817 5634794 ~ 5638273 (+) True LOC122363134
XM_043265098.1 mRNA downstream 16430 5641407 ~ 5645055 (+) True LOC122363140
XM_043216776.1 mRNA downstream 28729 5653706 ~ 5659654 (+) True LOC122323116
XM_043216774.1 mRNA downstream 35648 5660625 ~ 5674945 (+) True LOC122323115
TU184037 other upstream 228594 5394895 ~ 5395312 (+) True G124598
TU184019 other upstream 393960 5228563 ~ 5229946 (+) True G124580
TU184016 other upstream 397849 5225808 ~ 5226057 (+) True G124577
TU183987 other upstream 483235 5139490 ~ 5140671 (+) True G124553
TU183981 other upstream 513273 5071645 ~ 5110633 (+) True G124548
TU184110 other downstream 351233 5976210 ~ 5979282 (+) True G124661
TU184178 other downstream 666514 6291491 ~ 6291925 (+) True G124707
TU184202 other downstream 914270 6539247 ~ 6540907 (+) True G124727
TU184395 other downstream 1401341 7026318 ~ 7027135 (+) True G124881
TU184430 other downstream 1547649 7172626 ~ 7173020 (+) True G124914

Expression Profile