RNA id: XM_043264137.1


Basic Information

Item Value
RNA id XM_043264137.1
length 2696
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC122362599
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 6020549 ~ 6029121 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTGGTACCGCCTGCTTTTAAAATAGCACCCTGCACAATCTtcattataaatgaatgaacaaggGGGTGGGTAGTTTAGAAAAGGGAAGAAATGTGGATCACACTGTATATTTCTCTATGCCTGTCCTTTAACTGTATTTCTGTAGCTTCAGTACTCACATCAGACACATGTCAGCTCCAGGGACGCTTTCAGTTGAACAGCATGTACCAGGATGGGGACGTAATACTTGGAGGCCTGTTTATGGTTCATTTCTTTCCAGTTTTTCCAGATCTGAGCTTCAGAACAGAACCAGAaccgtctcggggaacaccATACTGCGAACAgtTTGATATGGAAAGTTTCCAGCAGGCACAGACCATGACTTTCGCAATTGATGAGATCAATAAGAATCCAAACTTGCTGCCTAACATCACTCTTGGTTACCATCTTTATGACAACTGTGTGAGACTTGGAATGGCGTTCCGGGCTGCTATATCTCTAGTTAGTGGGACTGAAAAGTCTTTCTCTAACCTAAATTGCACTGGCCCTCCTCCAGTAGTTGGTATTGTTGGGGATCCAAGTTCAACTCCTTCCATCGCAATTTCCAGCATTCTGGGACTATTTCGAGTACCTATAGTTAGTTACTATGCCACCTGCTCCTGTTTGAGTAACAGGAAAAAGTACCCCTCTTTCTTCAGAACAATCCCTAGTGATGCCTTCCAGGTCCGGGCTATGGTTCAGATCTTGAGACATTTTGGATGGACCTGGGTTGGTCTCATCTACAGTGATGATGATTATGGTGTTTACGCAGCTCAGTCCTTCCATCAGGAAATGCAACTGTTTGAAAATTGTATTGCTTTTTCTGAAATCTTACCCAATGATAACAACCCTAGAGATATTCAGCGTATAATGGGAGTGATTCATGCCTCTACTGCTAGAGTGGTGGTTGTTTTTTCCacttcatccttttttttacctttaatgGATGAAGTGGTGTCACAGAACATAACAGGCAGACAGTGGATTGCTAGTGAAGCTTGGGCTACTGCACCTGTATACCACACTCCACGTTAACTACCCTTCCTGGGAGGCACACTGGGCATTGCCGTTAGACGTGGTGAGATCTAGGGATTTTATGACTTTTTGCTACATACTCGTCTCAGCAGTGAACCAAGAAATAATATGTTGAGGATCTTCTGGGAAAATATGTTTAGGTGTAGTTATGAAACTGTGAAAGAGGGAGAGCAAGTGAGAAAGGTGTGTACAGGACAAGAAGATCTGAGCACAACAAACACACCATACACGGATGTTTCTGGTTTGAGAGCACCCTACAATGTCTATAAGGCTGTTTATGCACTGGCACATGCACTTCATGACCTGATGCAGTGTAAGGAGGGGAGAGGGCCATTCAGTGGGAACAGTTGTGCTGATATAACCAACCTGAAACCCTGGCAGCTGGTTCACTACCTACAGAAAGTGAACTTCACCACAGGATTTGGGGATCACGTGTCATTTGATAAGAATGGAGATGCTCTGCCCATCTATGATGTATTGAACTGGCAGCCGAGCTCTGATGGGTCAATAAGGATCTACACAGTTGGTGTGGTGAATGAAGGAGCGAAAACAGGGATGATGCTCAGACTGGATGAGGATGCAATATACTGGaactttaagacaaaaaaaGCCCCACGGTCTGTGTGTAGTGAGAGCTGCCCCCTAGGAACCAGACGAGCTACACGCAAGGGTCTTCCTGTCTGCTGCTTTGACTGCCTGCCATGTGGAGATGGAGAGATTTCTAATACTACAGATGCTATTGAGTGCACAGTGTGTCCAGGTGAGTTCTGGTCCAGTCCAGATAAAGATCACTGTGTCCCGAAAGAAGTAGAGTTTCTGTCTTTTGAGGATCCACTGGGCATCTTTCTGACCACTGCATCTCTGCTTGGAACTTGCTTTTGTGGTCTTGTGATAATAGTCTTCACATTTCACCGTAACACTCCTATAGTACGAGCCAACAATTCAGAGCTCAGCTTCCTGCTGCTGGTGTCActtaaactgtgttttctgtgtgttctGCTGTTTATTGGCCAGCCACAGTTATGGACATGTCAGTTAAGACATGCTGTGTTTGGTATAAGCTTTGTCCTGTGCATCTCCAGCATCCTGGTCAAGACTATGGTAGTAATAGCTGTGTTCAAGTCATCTCGGCCAGAAGGTAAAGGAGCAATGAAATGGTTTGGAGCAGTTCAACAGAGATGCACAGTTCTGGTCCTAACAGCACTTCAGGTTGTGATATGTGCAGTCTGGCTATCAACTGCCTCTCCAACACCACATAAAAACAACCAGTATACTCGCTCTAAAATAGTATATGAATGTGCTATAAGATCAGTGGCTGGTTTTTCTATGCTCCTCGGATACATTGGACTCTTGGCAGCAGTAAGCTTCCTGTTAGCCTTTCTTGCAAGAAATCTTCCAGataattttaatgaagcaaAGTTCATCACTTTTAGTATGATAATCTTCTGTGCTGTGTGGATTGCGTTTGTTCCAGCATATGTGAGTTCTCCAGGGAAATATGCAGTGGCTGTGGAGATATTTGCCATCCTAGCTTCTAGTTTTGGATTACTGGTGGCCATATTTGCCCCAAAGTGCTACATCATCCTTTTACATCCAGAGAGAAATACTAAAAATGCCATCATGGgaagagaaacaaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184061 lncRNA upstream 360316 5659906 ~ 5660233 (+) True G124622
TU184052 lncRNA upstream 395572 5623906 ~ 5624977 (+) False LOC122323196
TU184043 lncRNA upstream 524905 5495189 ~ 5495644 (+) False LOC122363125
TU184042 lncRNA upstream 526416 5492336 ~ 5494133 (+) False LOC122363125
TU184034 lncRNA upstream 665569 5354713 ~ 5354980 (+) True G124595
TU184162 lncRNA downstream 198360 6227481 ~ 6230584 (+) True G124703
XR_006253138.1 lncRNA downstream 261401 6290522 ~ 6290901 (+) True LOC122362614
TU184183 lncRNA downstream 266809 6295930 ~ 6296436 (+) True G124711
TU184200 lncRNA downstream 509425 6538546 ~ 6538992 (+) True G124725
TU184229 lncRNA downstream 548704 6577825 ~ 6578301 (+) True G124754
XM_043264136.1 mRNA upstream 8030 6009050 ~ 6012519 (+) True LOC122362598
XM_043216603.1 mRNA upstream 19724 5997382 ~ 6000825 (+) True LOC122322990
XM_043216541.1 mRNA upstream 29204 5987534 ~ 5991345 (+) True LOC122322932
XM_043216494.1 mRNA upstream 35817 5980691 ~ 5984732 (+) True LOC122322895
XM_043216891.1 mRNA upstream 46734 5970287 ~ 5973815 (+) True LOC122323200
XM_043264142.1 mRNA downstream 131438 6160559 ~ 6163866 (+) True LOC122362605
XM_043216906.1 mRNA downstream 533805 6562926 ~ 6566609 (+) True LOC122323214
XM_043216904.1 mRNA downstream 539838 6568959 ~ 6572553 (+) True LOC122323211
XM_043263886.1 mRNA downstream 695709 6724830 ~ 6734282 (+) True LOC122362447
XM_043264225.1 mRNA downstream 707954 6737075 ~ 6759776 (+) True dhx36
TU184110 other upstream 41267 5976210 ~ 5979282 (+) True G124661
TU184051 other upstream 390896 5623453 ~ 5629653 (+) True G124612
TU184037 other upstream 625237 5394895 ~ 5395312 (+) True G124598
TU184019 other upstream 790603 5228563 ~ 5229946 (+) True G124580
TU184016 other upstream 794492 5225808 ~ 5226057 (+) True G124577
TU184178 other downstream 262370 6291491 ~ 6291925 (+) True G124707
TU184202 other downstream 510126 6539247 ~ 6540907 (+) True G124727
TU184395 other downstream 997197 7026318 ~ 7027135 (+) True G124881
TU184430 other downstream 1143505 7172626 ~ 7173020 (+) True G124914
TU184436 other downstream 1148718 7177839 ~ 7178276 (+) True G124920

Expression Profile