RNA id: XR_006246936.1


Basic Information

Item Value
RNA id XR_006246936.1
length 143
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id LOC122323033
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 7317222 ~ 7319011 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgacgatgaagagaccacatctgctgtgacagaagtggacaatgctggtagatccactgagTACATACCTAGGGGTTTGCCCACAGATGAGGGTCCTTCAACCTCAGCACACAATCTAAGCAGGGTAACAATTTGTGTCCAgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184429 lncRNA upstream 145248 7172019 ~ 7172434 (+) True G124913
TU184423 lncRNA upstream 258085 7059351 ~ 7059597 (+) True G124907
TU184420 lncRNA upstream 261909 7055392 ~ 7055773 (+) True G124904
TU184418 lncRNA upstream 283015 7034443 ~ 7034667 (+) True G124902
TU184388 lncRNA upstream 376580 6940759 ~ 6941102 (+) True G124877
XR_006253137.1 lncRNA downstream 36603 7354500 ~ 7355149 (+) True LOC122362591
XR_006246941.1 lncRNA downstream 251162 7569059 ~ 7572136 (+) True LOC122323061
TU184516 lncRNA downstream 464295 7782192 ~ 7784566 (+) True LOC122362701
XR_006253154.1 lncRNA downstream 464319 7782216 ~ 7784344 (+) False LOC122362701
XR_006253153.1 lncRNA downstream 464543 7782440 ~ 7784344 (+) False LOC122362701
XM_043264293.1 mRNA upstream 227116 7088818 ~ 7090566 (+) True LOC122362721
XM_043264464.1 mRNA upstream 298633 6961116 ~ 7019049 (+) False def8
XM_043264297.1 mRNA downstream 528103 7846000 ~ 7848851 (+) True LOC122362727
XM_043264936.1 mRNA downstream 672636 7990533 ~ 7994775 (+) True emc8
XM_043264620.1 mRNA downstream 677675 7995572 ~ 8005861 (+) False gins2
XM_043264659.1 mRNA downstream 825602 8143499 ~ 8168224 (+) False si:ch211-220f16.2
XM_043264655.1 mRNA downstream 825602 8143499 ~ 8168224 (+) True si:ch211-220f16.2
TU184436 other upstream 139406 7177839 ~ 7178276 (+) True G124920
TU184430 other upstream 144662 7172626 ~ 7173020 (+) True G124914
TU184395 other upstream 290547 7026318 ~ 7027135 (+) True G124881
TU184202 other upstream 776775 6539247 ~ 6540907 (+) True G124727
TU184178 other upstream 1025757 6291491 ~ 6291925 (+) True G124707
TU184604 other downstream 858456 8176353 ~ 8536948 (+) True G125041
TU184804 other downstream 2041539 9359436 ~ 9365488 (+) True G125192
TU185257 other downstream 3507077 10824974 ~ 10837276 (+) False G125461
TU185261 other downstream 3507077 10824974 ~ 10837276 (+) True G125461
TU185314 other downstream 3650188 10968085 ~ 10969767 (+) True G125496