RNA id: XM_043264620.1


Basic Information

Item Value
RNA id XM_043264620.1
length 1980
RNA type mRNA
GC content 0.37
exon number 5
gene id gins2
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 7995572 ~ 8007882 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCATAGATACGCAACTGAGTACGCGGGAAATCTGCCACAGCAGAATGGATCCGCCTGAGGTAGAGTTTCTCGCAGAGAAAGAGATGGTAAAAATAATTCCGAACTTCAGTCTCGACAAAATCTATTTGattgggGGAGATCTGGGTCCGTTTAACCCAGGGCTGCCAGTGGAAGTTCCTGTGTGGTTGGCCCTCAATcttaaacaaagacagaaatgCAGGATAGTTCCTCCAGAATGGATGGACACCGACAAACTAGAGGAGATCCGAGAACAGGAGAGAAAACTAGAAACTTTCACTCCCATTCCAAGCCCGTATTACATGGAGCTAACCAAATTATTACTCAACCAttGTGCAGATAACATCCCCAAAGCCGATGAGATCCGAACCCTAGTGAAGGATATCTGGGACACACGCGTGGCCAAACTAAGACTTTCTGCTGATAGTTTCATCAGCCAGCAGGAGGCTCACGCACAGCTGGATAACCTCACGCTGATGGAGATCAACACCACACGCTCCTTCCTGCTGGACTCTCTCAACTACATGTATAAACTGCGCTCAAACCTGCAGCCGGGAAAAAGTCACGATTACTGAGATGTTCTCATATAACAGTATTGATCTGTCGTTTTTCAGGCTTTACTGCAATATTtagtaaaacaacaacaggcTGAAGTTTGCTTTAATGAGCTGATATGgctgtttgaaaatgtaatactACTATCATGGAATCATATCTTGAGTTTGTGACCTCTGCTGTGACCCGGCATGTAAATAGTAAGAGATACTGAGCAGtctaggggggaaaaaacacgTATGCAATAaaggtgtgttttgtttttttatgaaaattgttgaccattttaatttgtttaaatgtgtacTTGTCCCGGTTACTGTATCTGTTTGTAACCCTGGACcatagctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcaattttCTTTGTAGACGCAAAATAGCACTAGACTACTTCTTAACCtatttaattcataaagttgtcattaaaacaagtttttatGGGAGGCGCCTGCATGTTCACTTGCATTTTTGATAATGATACTGTATAtcactcaaaaacacattaaaggcctaattcataataataaatcttactTAAAATGTCTCCTTTCCCCTCCATACATTCATAATAATGTGGCAGAATAAGCTGCTTAAGGTGGATagttttgggggaaaaaataactGCTTGAACGACTAGTTAAGTTGTTGAGAGCAGTTCTAATAACTTCCACTTTAAGTACTGTCACATCTGTAACCAAGGGACGTCACGACGACGTATTTATCAAGTTACCGTTTAACTTTATGAATGCCTATATTTTTATAGGAAGAGGAGGGGGAATGTAGTCTATAGTTGATCATCGGAGACCATCATCTGTAGGGTTGTACAGATAATTACAGTACGCAGTACTTATTTTTTGTCAAGTATTTATTGTCAagtactttatttttgtgtactgtacttttacttttacagaACTGAGAGACgaataaaagacaaataaactCAGATAGTATTGCAGTATTTATAGAAGTTGGTTTGTAGTTTTGGAATGGTTTATAGCtgtgaaaatattaacaatgacaagcttaaaatgttttttttccctcttcatACCATTCATTCAGgtgtatattaatattctatTCATGTGCTGTCAAGGGGAAAAAATCTGTAGTACGAAGTGTTCCTAGACctttttggaaagaaaaatgttggGGCAAGAggtttttgtttgattaaaaaaaaaaaacggcaaacacatttttgcaatatttaatttttttgtctgaaattaCAGCAATATATCCATAAATACCTAATTACTACACTCAACaaagaatatattacattacaataaatccaaacaagtacataaaaaaataaaataacaaaaaaagaaaaacaaacaaaaaa

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184544 lncRNA upstream 6452 7986785 ~ 7989120 (+) True G124998
TU184542 lncRNA upstream 7885 7986785 ~ 7987687 (+) False G124998
TU184560 lncRNA upstream 10186 7984905 ~ 7985386 (+) True G125014
TU184527 lncRNA upstream 116170 7878696 ~ 7879402 (+) True G124985
TU184520 lncRNA upstream 176020 7812337 ~ 7819552 (+) True G124978
TU184599 lncRNA downstream 127630 8133491 ~ 8133785 (+) True G125039
TU184606 lncRNA downstream 163004 8168865 ~ 8532072 (+) True si:ch73-103b9.2
TU184608 lncRNA downstream 163004 8168865 ~ 8527681 (+) False si:ch73-103b9.2
TU184594 lncRNA downstream 181702 8187563 ~ 8190375 (+) False LOC122362910
TU184595 lncRNA downstream 181702 8187563 ~ 8190375 (+) False LOC122362910
XM_043264936.1 mRNA upstream 797 7990533 ~ 7994775 (+) True emc8
XM_043264297.1 mRNA upstream 146721 7846000 ~ 7848851 (+) True LOC122362727
XM_043264293.1 mRNA upstream 905006 7088818 ~ 7090566 (+) True LOC122362721
XM_043264466.1 mRNA upstream 976523 6961116 ~ 7019049 (+) False def8
XM_043264659.1 mRNA downstream 137638 8143499 ~ 8168224 (+) False si:ch211-220f16.2
XM_043264655.1 mRNA downstream 137638 8143499 ~ 8168224 (+) True si:ch211-220f16.2
XM_043264658.1 mRNA downstream 137638 8143499 ~ 8168224 (+) False si:ch211-220f16.2
XM_043264657.1 mRNA downstream 137638 8143499 ~ 8168224 (+) False si:ch211-220f16.2
XM_043264656.1 mRNA downstream 137643 8143504 ~ 8168224 (+) False si:ch211-220f16.2
TU184436 other upstream 817296 7177839 ~ 7178276 (+) True G124920
TU184430 other upstream 822552 7172626 ~ 7173020 (+) True G124914
TU184395 other upstream 968437 7026318 ~ 7027135 (+) True G124881
TU184202 other upstream 1454665 6539247 ~ 6540907 (+) True G124727
TU184178 other upstream 1703647 6291491 ~ 6291925 (+) True G124707
TU184604 other downstream 170492 8176353 ~ 8536948 (+) True G125041
TU184804 other downstream 1353575 9359436 ~ 9365488 (+) True G125192
TU185257 other downstream 2819113 10824974 ~ 10837276 (+) False G125461
TU185261 other downstream 2819113 10824974 ~ 10837276 (+) True G125461
TU185314 other downstream 2962224 10968085 ~ 10969767 (+) True G125496

Expression Profile