RNA id: TU184906



Basic Information


Item Value
RNA id TU184906
length 630
lncRNA type intronic
GC content 0.59
exon number 2
gene id G125243
representative False

Chromosome Information


Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 9786260 ~ 9788103 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tgcctcgtcacacgccgccagacctggccaataccacgcccctcctctcgaacacacccactcccgtcgggagcctggtgaagggcggcgaataaaggacggggtgatggtgacgataaagaggaggggcagccgactcgtcacattcccctccccaagcgtcaaccccgtcaggcggtcgccgcccacgcaggagtgctaccttcctcaaccaggctccagcggtcggagtgggcggggcagggattctccgggcaactcctctcgcaccgggacagagaaaccgggaattagtcggaatgctcaaccagccaccgggtaaatgacagtaaacgcaggcgtcacttacccttcctggtggctgggagcgagtctccgttgttcctccgtcccggcatggataccagcgagaggggatgatGTCATCAGGCGttgcccaactgtgccgtctaagctccgccttgcccgcattctccaccactgtgacgggaggagccaacgacagacacagtgggcgtggcgtcaggcctcggagaggcttttattattaacaaaataataataatacaaaataataaagtgtccagggaaaagtgtccaaataaaaggggatctggtgtcctcgtcgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184883 lncRNA upstream 91154 9694203 ~ 9695683 (+) True G125236
TU184824 lncRNA upstream 274595 9419549 ~ 9512242 (+) False G125194
TU184828 lncRNA upstream 274595 9419549 ~ 9512242 (+) False G125194
TU184830 lncRNA upstream 274595 9419549 ~ 9512242 (+) True G125194
TU184803 lncRNA upstream 434939 9351635 ~ 9351898 (+) True G125191
TU184887 lncRNA downstream 14964 9802919 ~ 10037928 (+) True G125240
TU184901 lncRNA downstream 15881 9803836 ~ 10037928 (+) False G125240
TU184920 lncRNA downstream 266857 10054812 ~ 10055057 (+) True G125253
TU184922 lncRNA downstream 269786 10057741 ~ 10062780 (+) True G125254
TU184924 lncRNA downstream 269786 10057741 ~ 10062780 (+) False G125254
XM_043265107.1 mRNA upstream 37054 9744904 ~ 9749783 (+) True arpp19a
XM_043264262.1 mRNA upstream 47431 9709204 ~ 9739406 (+) True fam214a
XM_043264263.1 mRNA upstream 47431 9729301 ~ 9739406 (+) False fam214a
XM_043263914.1 mRNA upstream 84691 9696223 ~ 9702146 (+) True onecut1
XM_043264075.1 mRNA downstream 360120 10148075 ~ 10160926 (+) True LOC122362557
XM_043264076.1 mRNA downstream 371321 10159276 ~ 10160926 (+) False LOC122362557
XM_043264134.1 mRNA downstream 402815 10190770 ~ 10193160 (+) True LOC122362596
XM_043264594.1 mRNA downstream 408849 10196804 ~ 10209150 (+) True gnb5b
XM_043264595.1 mRNA downstream 421398 10209353 ~ 10214486 (+) True bcl2l10
TU184804 other upstream 421349 9359436 ~ 9365488 (+) True G125192
TU184604 other upstream 1249889 8176353 ~ 8536948 (+) True G125041
TU184436 other upstream 2608561 7177839 ~ 7178276 (+) True G124920
TU184430 other upstream 2613817 7172626 ~ 7173020 (+) True G124914
TU184395 other upstream 2759702 7026318 ~ 7027135 (+) True G124881
TU185257 other downstream 1037019 10824974 ~ 10837276 (+) False G125461
TU185261 other downstream 1037019 10824974 ~ 10837276 (+) True G125461
TU185314 other downstream 1180130 10968085 ~ 10969767 (+) True G125496
XR_006253172.1 other downstream 1438160 11226115 ~ 11231714 (+) False ccnl1a
XR_006246968.1 other downstream 1446376 11234331 ~ 11237147 (+) False selenot1b

Expression Profile