RNA id: TU185086


Basic Information

Item Value
RNA id TU185086
length 2145
lncRNA type sense_over
GC content 0.43
exon number 3
gene id gldn
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 10416013 ~ 10425840 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aagaatttattCAACTTACAAAGGTAAAACTTTGACCATGACAGAACTACCTGTTCCTTCGGAAATACCAACCAGTGTTTTGGGGATTGCATTTTCAGACACGCAGACAGATCAGGCTGTTCAATAAATACACATCAGACCATCGgttcaacatttaaaatacgTACAGTTGACATGGTGCCCAGCAAatcagacagaaacacaaatatgattttaataaataccaCATACGTCAAACCAAATATACGACTATTCCAGCAGTTATGATAAAATcgaaaaaataaactaaaagcgTTATTGTGTTTGTACAAGCTATTGTCGTAAttcgtttttatatttatatatatatatttatatatatatttattcgtttaaaacTATTTCCACTTTTTACTACTCGGCCACACACAGCCAGACATTCATTAGTAAATAACAGTTTCCTCTAATAGAGCTTTTATCACTTGTAACGTAAGAGTGTTATTTGTTTCCCCAGATCTGAGTGCAAATATTTAGAATagataaaacatgaaaaaataaatatgtaaataaataaaacacgaaCCTATTCAGTGTTGCACTTTGTCCCAGACATCTAAAACAAACCTTACATTCCTAAAGTTGAATATAAATACGAGAATtcgtaaaagaaaagaaaaacgaaACCGAAAACGAGTAAACGagcattttgtgcaaaaaaacagtttgaggTGAGATTTTCAGGGTTTcgagagacaaagaaaaaaggtcaaatgCGTCATTTCCCGGAGCAAGCGCCGTCGTCTCGCGTGGAATGTTTAGCTGTTTGGCTGCTACGGAAACAAGCGTGTCAACAGCAGCGTGTGCGTGTGATAGGGAGGGGGTGTGTCTCTGGGGCCGCGGCCAATCGCCGGGGCCGCCAGGGTTCTGTGCCATTTTACACTCCGCAAATACATTAGCAGCCAAGGAGAAAACgtacagtaaaaactaaatcCAACAACTGGACTTACACTGAAAGCAGAAGCACAGTGCTGGTATTTTTAGATGCTAAAATGGGCACAaaatgaagacacacacacacatacacacttaaaAATGGAGCTTTGAGCACTTTTACAGAGCACGACCAATAACCTGGGAATGGAGTGCGATGACTCAAACAGCTCATGCATACGGCTTTCCTACCAACACGTTATCTGGACGGAGGTCCAGAAATACGACAGTAGTCGATCGTTAGAATCGAGGGACCTCGTGCGTGTTTTTCCAACGTCTTTTGTGGGGCGGGGTGGTAAAGATATTCTGCAGCGCGAGATATTTGTTACCGGTTTACGATTCACAGCTAAGGAAACACAGCGGAGGTGCCGATGAAAGCTTTGGTCTTCTACGGCCGCTCCGGCGTTAGAGGATCTGGAATATACTGGCCGGAATGTTGTAGCGGTCCGGAAGGACCCTCATTTTCAGGGTCCCGTCGGCTCCGCaggtgaagatccggttgcccGGGCAGGTTTCGATTTGCATCACGCCGGCGCCGATGTTTCGGAATATCGACTGCTTGGCGTGTTCGGTGCTGAAGGAGTGCATGAGCCCGTGACCCGCCAGCTTCCAGACCTGAACCTTCATGTTCCCTTCGGCTGAGCCGGTGACAAAGAAGTCTTCGGTGGAATCCATGGCCAGCGCTTTGATGGCCGAGTCATGTGCCTGGAATGTGTGGAGCAGCTGTCTCTGACGGATGTCAAAAATACAGACGAATCCCTTCCGGCCGCCTGTGATGATTAGCTGCTGTTTAGGAGCATATTGAAGAACCGTCGCGCCATTCTCATGGCACTGGAACCATGTATCATCGAGTTACTTGGAGAGACCAGAGTGTCCCATAAACAGACATTCCTGCGAAAGAAAGTGAAATACTTCCTTAAAAATGTCGTACATAGTCTGTTTCTATATGACGCTAAGATAAATCATTTAACTGACCTGCCATCATTGGACTGTCCTGCCGTGGCTATCAGACTGGAAGATGTAATGAAGGCGAAATCACCGCAGCTTTTACTGTGACACTGCCAGCTCTGAGACAGACAACCCAGAGAtgcttatttttcatattatatgcTGACATATGTTTAATAGTAAAGTTAGtttcaatgaaaacaatgttAGGGCAGTTTGTGACCGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185093 lncRNA upstream 13222 10409318 ~ 10409600 (+) True G125369
TU185092 lncRNA upstream 14006 10408129 ~ 10408816 (+) False LOC122362497
XR_006253126.1 lncRNA upstream 14076 10404414 ~ 10408746 (+) True LOC122362497
XR_006253125.1 lncRNA upstream 14130 10404414 ~ 10408692 (+) False LOC122362497
TU185090 lncRNA upstream 15434 10406970 ~ 10407388 (+) True G125367
XR_006253145.1 lncRNA downstream 175284 10601124 ~ 10602846 (+) True LOC122362658
TU185218 lncRNA downstream 206637 10632477 ~ 10638048 (+) False sema6dl
TU185276 lncRNA downstream 360065 10785905 ~ 10787023 (+) True G125470
XR_006253185.1 lncRNA downstream 419612 10845452 ~ 10849689 (+) True LOC122363043
TU185294 lncRNA downstream 472324 10898164 ~ 10905562 (+) True G125481
XM_043264811.1 mRNA upstream 61510 10352575 ~ 10361312 (+) True acadl
XM_043216704.1 mRNA upstream 87069 10328942 ~ 10335753 (+) True lysmd2
XM_043264789.1 mRNA upstream 102174 10297497 ~ 10320648 (+) True tmod2
XM_043264595.1 mRNA upstream 208336 10209353 ~ 10214486 (+) True bcl2l10
XM_043264594.1 mRNA upstream 213672 10196804 ~ 10209150 (+) True gnb5b
XM_043264742.1 mRNA downstream 206847 10632687 ~ 10718085 (+) True sema6dl
XM_043264741.1 mRNA downstream 274201 10700041 ~ 10718085 (+) False sema6dl
XM_043264740.1 mRNA downstream 274713 10700553 ~ 10718085 (+) False sema6dl
XM_043264743.1 mRNA downstream 274713 10700553 ~ 10718085 (+) False sema6dl
XM_043264744.1 mRNA downstream 274713 10700553 ~ 10718085 (+) False sema6dl
TU184804 other upstream 1057334 9359436 ~ 9365488 (+) True G125192
TU184604 other upstream 1885874 8176353 ~ 8536948 (+) True G125041
TU184436 other upstream 3244546 7177839 ~ 7178276 (+) True G124920
TU184430 other upstream 3249802 7172626 ~ 7173020 (+) True G124914
TU184395 other upstream 3395687 7026318 ~ 7027135 (+) True G124881
TU185257 other downstream 399134 10824974 ~ 10837276 (+) False G125461
TU185261 other downstream 399134 10824974 ~ 10837276 (+) True G125461
TU185314 other downstream 542245 10968085 ~ 10969767 (+) True G125496
XR_006253172.1 other downstream 800275 11226115 ~ 11231714 (+) False ccnl1a
XR_006246968.1 other downstream 808491 11234331 ~ 11237147 (+) False selenot1b

Expression Profile